RNA–Protein interactions for RNA: ENST00000559822.1

SPG11-219, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 5

Gene SPG11, Length 561 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-219ENST00000559822 SLC4A2P04920 1241 aa15.7■□□□□ 0.1
SPG11-219ENST00000559822 CTSWP56202 376 aa15.7■□□□□ 0.1
SPG11-219ENST00000559822 MICALL2Q8IY33 904 aa15.7■□□□□ 0.1
SPG11-219ENST00000559822 PGAP2Q9UHJ9 254 aa15.7■□□□□ 0.1
SPG11-219ENST00000559822 COL4A1P02462 1669 aa15.7■□□□□ 0.1
SPG11-219ENST00000559822 XDHP47989 1333 aa15.69■□□□□ 0.1
SPG11-219ENST00000559822 WDR33Q9C0J8 1336 aaKnown RBP15.69■□□□□ 0.1
SPG11-219ENST00000559822 FANCIQ9NVI1 1328 aa15.69■□□□□ 0.1
SPG11-219ENST00000559822 NEURL1BA8MQ27 555 aa15.69■□□□□ 0.1
SPG11-219ENST00000559822 IGKV5-2P06315 115 aa15.69■□□□□ 0.1
SPG11-219ENST00000559822 CTCFP49711 727 aaPredicted RBP15.69■□□□□ 0.1
SPG11-219ENST00000559822 MAP2K1Q02750 393 aaPredicted RBP15.69■□□□□ 0.1
SPG11-219ENST00000559822 JARID2Q92833 1246 aaPredicted RBP15.69■□□□□ 0.1
SPG11-219ENST00000559822 CCDC85AQ96PX6 553 aaPredicted RBP15.69■□□□□ 0.1
SPG11-219ENST00000559822 CACNA1FO60840 1977 aa15.68■□□□□ 0.1
SPG11-219ENST00000559822 RTL9Q8NET4 1388 aa15.68■□□□□ 0.1
SPG11-219ENST00000559822 TRAF5O00463 557 aa15.68■□□□□ 0.1
SPG11-219ENST00000559822 FLIIQ13045 1269 aa15.68■□□□□ 0.1
SPG11-219ENST00000559822 DOK7Q18PE1 504 aa15.68■□□□□ 0.1
SPG11-219ENST00000559822 PAXIP1Q6ZW49 1069 aaPredicted RBP15.68■□□□□ 0.1
SPG11-219ENST00000559822 CDC37L1Q7L3B6 337 aa15.68■□□□□ 0.1
SPG11-219ENST00000559822 TRPM4Q8TD43 1214 aa15.68■□□□□ 0.1
SPG11-219ENST00000559822 MYH16Q9H6N6 1097 aa15.68■□□□□ 0.1
SPG11-219ENST00000559822 ZBTB12Q9Y330 459 aaPredicted RBP15.68■□□□□ 0.1
SPG11-219ENST00000559822 TLL2Q9Y6L7 1015 aa15.68■□□□□ 0.1
SPG11-219ENST00000559822 MYH3P11055 1940 aa15.68■□□□□ 0.1
SPG11-219ENST00000559822 FOXN1O15353 648 aa15.67■□□□□ 0.1
SPG11-219ENST00000559822 CELF2O95319 508 aaKnown RBP15.67■□□□□ 0.1
SPG11-219ENST00000559822 ATP2B4P23634 1241 aa15.67■□□□□ 0.1
SPG11-219ENST00000559822 FKBP5Q13451 457 aaPredicted RBP15.67■□□□□ 0.1
SPG11-219ENST00000559822 CWF19L2Q2TBE0 894 aaKnown RBP15.67■□□□□ 0.1
SPG11-219ENST00000559822 CAPNS2Q96L46 248 aa15.67■□□□□ 0.1
SPG11-219ENST00000559822 GLIS2Q9BZE0 524 aaPredicted RBP15.67■□□□□ 0.1
SPG11-219ENST00000559822 PRDM10Q9NQV6 1147 aa15.67■□□□□ 0.1
SPG11-219ENST00000559822 WBP1LQ9NX94 342 aa15.67■□□□□ 0.1
SPG11-219ENST00000559822 HIRAP54198 1017 aaPredicted RBP15.66■□□□□ 0.1
SPG11-219ENST00000559822 FMR1Q06787 632 aaKnown RBP eCLIP15.66■□□□□ 0.11e-6■■■■□ 21.9
SPG11-219ENST00000559822 CST9Q5W186 159 aa15.66■□□□□ 0.1
SPG11-219ENST00000559822 G2E3Q7L622 706 aa15.66■□□□□ 0.1
SPG11-219ENST00000559822 UBE3BQ7Z3V4 1068 aa15.66■□□□□ 0.1
SPG11-219ENST00000559822 TTLL11Q8NHH1 800 aa15.66■□□□□ 0.1
SPG11-219ENST00000559822 DNAAF4Q8WXU2 420 aa15.66■□□□□ 0.1
SPG11-219ENST00000559822 GPR101Q96P66 508 aaPredicted RBP15.66■□□□□ 0.1
SPG11-219ENST00000559822 BSDC1Q9NW68 430 aaPredicted RBP15.66■□□□□ 0.1
SPG11-219ENST00000559822 SALL2Q9Y467 1007 aaPredicted RBP15.66■□□□□ 0.1
SPG11-219ENST00000559822 THSD7BQ9C0I4 1608 aa15.65■□□□□ 0.1
SPG11-219ENST00000559822 H7C1W4 665 aa15.65■□□□□ 0.1
SPG11-219ENST00000559822 VIL1P09327 827 aaKnown RBP15.65■□□□□ 0.1
SPG11-219ENST00000559822 GCKRQ14397 625 aa15.65■□□□□ 0.1
SPG11-219ENST00000559822 LINS1Q8NG48 757 aa15.65■□□□□ 0.1
SPG11-219ENST00000559822 HHIPL1Q96JK4 782 aa15.65■□□□□ 0.1
SPG11-219ENST00000559822 BEGAINQ9BUH8 593 aa15.65■□□□□ 0.1
SPG11-219ENST00000559822 PLA2G12BQ9BX93 195 aa15.65■□□□□ 0.1
SPG11-219ENST00000559822 GREM2Q9H772 168 aa15.65■□□□□ 0.1
SPG11-219ENST00000559822 ZNF609O15014 1411 aa15.65■□□□□ 0.1
SPG11-219ENST00000559822 SHTN1A0MZ66 631 aa15.64■□□□□ 0.09
SPG11-219ENST00000559822 VAMP4O75379 141 aa15.64■□□□□ 0.09
SPG11-219ENST00000559822 IGHMBP2P38935 993 aaKnown RBP15.64■□□□□ 0.09
SPG11-219ENST00000559822 EXOSC9Q06265 439 aaKnown RBP15.64■□□□□ 0.09
SPG11-219ENST00000559822 TBC1D10BQ4KMP7 808 aaPredicted RBP15.64■□□□□ 0.09
SPG11-219ENST00000559822 SAMD7Q7Z3H4 446 aa15.64■□□□□ 0.09
SPG11-219ENST00000559822 PODNQ7Z5L7 613 aa15.64■□□□□ 0.09
SPG11-219ENST00000559822 AGBL3Q8NEM8 1001 aa15.64■□□□□ 0.09
SPG11-219ENST00000559822 DCPSQ96C86 337 aaKnown RBP15.64■□□□□ 0.09
SPG11-219ENST00000559822 MED23Q9ULK4 1368 aa15.63■□□□□ 0.09
SPG11-219ENST00000559822 KIF4BQ2VIQ3 1234 aa15.63■□□□□ 0.09
SPG11-219ENST00000559822 CYP4F22Q6NT55 531 aa15.63■□□□□ 0.09
SPG11-219ENST00000559822 KRT26Q7Z3Y9 468 aa15.63■□□□□ 0.09
SPG11-219ENST00000559822 SAPCD2Q86UD0 394 aa15.63■□□□□ 0.09
SPG11-219ENST00000559822 ZNF408Q9H9D4 720 aa15.63■□□□□ 0.09
SPG11-219ENST00000559822 KCNQ5Q9NR82 932 aa15.63■□□□□ 0.09
SPG11-219ENST00000559822 SCN9AQ15858 1988 aa15.62■□□□□ 0.09
SPG11-219ENST00000559822 MAP2K2P36507 400 aa15.62■□□□□ 0.09
SPG11-219ENST00000559822 GRM1Q13255 1194 aa15.62■□□□□ 0.09
SPG11-219ENST00000559822 RBM26Q5T8P6 1007 aaKnown RBP15.62■□□□□ 0.09
SPG11-219ENST00000559822 RSBN1LQ6PCB5 846 aaPredicted RBP15.62■□□□□ 0.09
SPG11-219ENST00000559822 USP48Q86UV5 1035 aa15.62■□□□□ 0.09
SPG11-219ENST00000559822 FAM9BQ8IZU0 186 aa15.62■□□□□ 0.09
SPG11-219ENST00000559822 MINPP1Q9UNW1 487 aa15.62■□□□□ 0.09
SPG11-219ENST00000559822 PSME4Q14997 1843 aa15.61■□□□□ 0.09
SPG11-219ENST00000559822 USP17L3A6NCW0 530 aa15.61■□□□□ 0.09
SPG11-219ENST00000559822 USP17L4A6NCW7 530 aa15.61■□□□□ 0.09
SPG11-219ENST00000559822 ITGA6P23229 1130 aa15.61■□□□□ 0.09
SPG11-219ENST00000559822 CCT4P50991 539 aaKnown RBP15.61■□□□□ 0.09
SPG11-219ENST00000559822 USP17L1Q7RTZ2 530 aa15.61■□□□□ 0.09
SPG11-219ENST00000559822 MPHOSPH8Q99549 860 aa15.61■□□□□ 0.09
SPG11-219ENST00000559822 ANKRD2Q9GZV1 360 aa15.61■□□□□ 0.09
SPG11-219ENST00000559822 LEMD3Q9Y2U8 911 aa15.61■□□□□ 0.09
SPG11-219ENST00000559822 SPEF2Q9C093 1822 aa15.61■□□□□ 0.09
SPG11-219ENST00000559822 CASP7P55210 303 aa15.6■□□□□ 0.09
SPG11-219ENST00000559822 ZNF280AP59817 542 aaPredicted RBP15.6■□□□□ 0.09
SPG11-219ENST00000559822 SULF1Q8IWU6 871 aa15.6■□□□□ 0.09
SPG11-219ENST00000559822 CAPN15O75808 1086 aa15.59■□□□□ 0.09
SPG11-219ENST00000559822 EGFRP00533 1210 aa15.59■□□□□ 0.09
SPG11-219ENST00000559822 CSF1RP07333 972 aa15.59■□□□□ 0.09
SPG11-219ENST00000559822 USP17L8P0C7I0 530 aa15.59■□□□□ 0.09
SPG11-219ENST00000559822 HSPA8P11142 646 aaKnown RBP15.59■□□□□ 0.09
SPG11-219ENST00000559822 LBX1P52954 281 aa15.59■□□□□ 0.09
SPG11-219ENST00000559822 FAM161AQ3B820 660 aa15.59■□□□□ 0.09
SPG11-219ENST00000559822 COA1Q9GZY4 146 aa15.59■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 132.3 ms