RNA–Protein interactions for RNA: ENST00000557548.1

TRAV28-201, Transcript of T cell receptor alpha variable 28 (pseudogene), humanhuman

BASIC

Gene TRAV28, Length 323 nt, Biotype TR V pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV28-201ENST00000557548 USP20Q9Y2K6 914 aa4.71□□□□□ -1.66
TRAV28-201ENST00000557548 CADPSQ9ULU8 1353 aa4.7□□□□□ -1.66
TRAV28-201ENST00000557548 PPM1GO15355 546 aaPredicted RBP4.7□□□□□ -1.66
TRAV28-201ENST00000557548 TNFRSF21O75509 655 aa4.7□□□□□ -1.66
TRAV28-201ENST00000557548 ARID5AQ03989 594 aa4.7□□□□□ -1.66
TRAV28-201ENST00000557548 PTPN12Q05209 780 aaKnown RBP4.7□□□□□ -1.66
TRAV28-201ENST00000557548 TRIP4Q15650 581 aaPredicted RBP4.7□□□□□ -1.66
TRAV28-201ENST00000557548 NBPF1Q3BBV0 1214 aa4.7□□□□□ -1.66
TRAV28-201ENST00000557548 PMFBP1Q8TBY8 1022 aa4.7□□□□□ -1.66
TRAV28-201ENST00000557548 SNX29Q8TEQ0 813 aa4.7□□□□□ -1.66
TRAV28-201ENST00000557548 SUSD3Q96L08 255 aa4.7□□□□□ -1.66
TRAV28-201ENST00000557548 FMNL2Q96PY5 1086 aa4.7□□□□□ -1.66
TRAV28-201ENST00000557548 KLF16Q9BXK1 252 aaPredicted RBP4.7□□□□□ -1.66
TRAV28-201ENST00000557548 SRA1Q9HD15 236 aaKnown RBP4.7□□□□□ -1.66
TRAV28-201ENST00000557548 SOS2Q07890 1332 aaPredicted RBP4.7□□□□□ -1.66
TRAV28-201ENST00000557548 USP31Q70CQ4 1352 aa4.69□□□□□ -1.66
TRAV28-201ENST00000557548 USP17L7P0C7H9 530 aa4.69□□□□□ -1.66
TRAV28-201ENST00000557548 PHKA2P46019 1235 aa4.69□□□□□ -1.66
TRAV28-201ENST00000557548 ARSDP51689 593 aa4.69□□□□□ -1.66
TRAV28-201ENST00000557548 HIF1AQ16665 826 aa4.69□□□□□ -1.66
TRAV28-201ENST00000557548 CCDC144BQ3MJ40 725 aa4.69□□□□□ -1.66
TRAV28-201ENST00000557548 ZNF438Q7Z4V0 828 aa4.69□□□□□ -1.66
TRAV28-201ENST00000557548 CMTR1Q8N1G2 835 aaKnown RBP4.69□□□□□ -1.66
TRAV28-201ENST00000557548 CCDC155Q8N6L0 562 aa4.69□□□□□ -1.66
TRAV28-201ENST00000557548 C7orf43Q8WVR3 580 aa4.69□□□□□ -1.66
TRAV28-201ENST00000557548 ARMC5Q96C12 935 aa4.69□□□□□ -1.66
TRAV28-201ENST00000557548 INSM2Q96T92 566 aaPredicted RBP4.69□□□□□ -1.66
TRAV28-201ENST00000557548 GRIP2Q9C0E4 1043 aa4.69□□□□□ -1.66
TRAV28-201ENST00000557548 NPHS2Q9NP85 383 aa4.69□□□□□ -1.66
TRAV28-201ENST00000557548 ZDHHC3Q9NYG2 299 aa4.69□□□□□ -1.66
TRAV28-201ENST00000557548 DMGDHQ9UI17 866 aaKnown RBP4.69□□□□□ -1.66
TRAV28-201ENST00000557548 CDC14CA4D256 554 aa4.68□□□□□ -1.66
TRAV28-201ENST00000557548 UBAP1LF5GYI3 381 aa4.68□□□□□ -1.66
TRAV28-201ENST00000557548 GIPC1O14908 333 aa4.68□□□□□ -1.66
TRAV28-201ENST00000557548 PHACTR2O75167 634 aa4.68□□□□□ -1.66
TRAV28-201ENST00000557548 UPP2O95045 317 aa4.68□□□□□ -1.66
TRAV28-201ENST00000557548 POLR3DP05423 398 aaPredicted RBP4.68□□□□□ -1.66
TRAV28-201ENST00000557548 BMP2P12643 396 aa4.68□□□□□ -1.66
TRAV28-201ENST00000557548 TATP17735 454 aaPredicted RBP4.68□□□□□ -1.66
TRAV28-201ENST00000557548 GPC1P35052 558 aa4.68□□□□□ -1.66
TRAV28-201ENST00000557548 TAF1CQ15572 869 aaPredicted RBP4.68□□□□□ -1.66
TRAV28-201ENST00000557548 IER5Q5VY09 327 aa4.68□□□□□ -1.66
TRAV28-201ENST00000557548 BICDL1Q6ZP65 573 aa4.68□□□□□ -1.66
TRAV28-201ENST00000557548 NOP9Q86U38 636 aaKnown RBP4.68□□□□□ -1.66
TRAV28-201ENST00000557548 MCF2L2Q86YR7 1114 aa4.68□□□□□ -1.66
TRAV28-201ENST00000557548 MEIOBQ8N635 442 aa4.68□□□□□ -1.66
TRAV28-201ENST00000557548 ZFYVE28Q9HCC9 887 aa4.68□□□□□ -1.66
TRAV28-201ENST00000557548 TMEM63CQ9P1W3 806 aa4.68□□□□□ -1.66
TRAV28-201ENST00000557548 FAM8A1Q9UBU6 413 aa4.68□□□□□ -1.66
TRAV28-201ENST00000557548 FNDC3AQ9Y2H6 1198 aaKnown RBP4.68□□□□□ -1.66
TRAV28-201ENST00000557548 RTCBQ9Y3I0 505 aaKnown RBP4.68□□□□□ -1.66
TRAV28-201ENST00000557548 GADD45BO75293 160 aaPredicted RBP4.67□□□□□ -1.66
TRAV28-201ENST00000557548 BCRP11274 1271 aa4.67□□□□□ -1.66
TRAV28-201ENST00000557548 ATP4AP20648 1035 aa4.67□□□□□ -1.66
TRAV28-201ENST00000557548 INPP5BP32019 993 aa4.67□□□□□ -1.66
TRAV28-201ENST00000557548 RNF144AP50876 292 aaPredicted RBP4.67□□□□□ -1.66
TRAV28-201ENST00000557548 PAK2Q13177 524 aa4.67□□□□□ -1.66
TRAV28-201ENST00000557548 PDE12Q6L8Q7 609 aaKnown RBP4.67□□□□□ -1.66
TRAV28-201ENST00000557548 NBPF10Q6P3W6 841 aaKnown RBP4.67□□□□□ -1.66
TRAV28-201ENST00000557548 NXPE4Q6UWF7 544 aa4.67□□□□□ -1.66
TRAV28-201ENST00000557548 XKR5Q6UX68 686 aa4.67□□□□□ -1.66
TRAV28-201ENST00000557548 BTLAQ7Z6A9 289 aa4.67□□□□□ -1.66
TRAV28-201ENST00000557548 VPS37DQ86XT2 251 aa4.67□□□□□ -1.66
TRAV28-201ENST00000557548 BUD13Q9BRD0 619 aaKnown RBP eCLIP4.67□□□□□ -1.66
TRAV28-201ENST00000557548 BCO2Q9BYV7 579 aa4.67□□□□□ -1.66
TRAV28-201ENST00000557548 PIF1Q9H611 641 aa4.67□□□□□ -1.66
TRAV28-201ENST00000557548 ELP3Q9H9T3 547 aa4.67□□□□□ -1.66
TRAV28-201ENST00000557548 POLMQ9NP87 494 aaPredicted RBP4.67□□□□□ -1.66
TRAV28-201ENST00000557548 COPRSQ9NQ92 184 aa4.67□□□□□ -1.66
TRAV28-201ENST00000557548 TMA7Q9Y2S6 64 aaKnown RBP4.67□□□□□ -1.66
TRAV28-201ENST00000557548 KCNMB2Q9Y691 235 aa4.67□□□□□ -1.66
TRAV28-201ENST00000557548 ANKRD62A6NC57 917 aa4.66□□□□□ -1.66
TRAV28-201ENST00000557548 C1QTNF9BB2RNN3 333 aa4.66□□□□□ -1.66
TRAV28-201ENST00000557548 EREGO14944 169 aa4.66□□□□□ -1.66
TRAV28-201ENST00000557548 STK10O94804 968 aaKnown RBP4.66□□□□□ -1.66
TRAV28-201ENST00000557548 FGRP09769 529 aa4.66□□□□□ -1.66
TRAV28-201ENST00000557548 ITGA6P23229 1130 aa4.66□□□□□ -1.66
TRAV28-201ENST00000557548 GJA8P48165 433 aa4.66□□□□□ -1.66
TRAV28-201ENST00000557548 ST13P50502 369 aaKnown RBP4.66□□□□□ -1.66
TRAV28-201ENST00000557548 LRRC69Q6ZNQ3 347 aa4.66□□□□□ -1.66
TRAV28-201ENST00000557548 ERMP1Q7Z2K6 904 aa4.66□□□□□ -1.66
TRAV28-201ENST00000557548 GPRASP2Q96D09 838 aa4.66□□□□□ -1.66
TRAV28-201ENST00000557548 HIRIP3Q9BW71 556 aaPredicted RBP4.66□□□□□ -1.66
TRAV28-201ENST00000557548 CHRDQ9H2X0 955 aa4.66□□□□□ -1.66
TRAV28-201ENST00000557548 ZSWIM4Q9H7M6 989 aa4.66□□□□□ -1.66
TRAV28-201ENST00000557548 ANKIB1Q9P2G1 1089 aa4.66□□□□□ -1.66
TRAV28-201ENST00000557548 GPC6Q9Y625 555 aaPredicted RBP4.66□□□□□ -1.66
TRAV28-201ENST00000557548 SPATA31C2B4DYI2 1134 aa4.65□□□□□ -1.67
TRAV28-201ENST00000557548 ATF4P18848 351 aaPredicted RBP4.65□□□□□ -1.67
TRAV28-201ENST00000557548 NCLP19338 710 aaKnown RBP4.65□□□□□ -1.67
TRAV28-201ENST00000557548 GRNP28799 593 aaKnown RBP4.65□□□□□ -1.67
TRAV28-201ENST00000557548 CTSOP43234 321 aaPredicted RBP4.65□□□□□ -1.67
TRAV28-201ENST00000557548 RBL2Q08999 1139 aa4.65□□□□□ -1.67
TRAV28-201ENST00000557548 POU4F2Q12837 409 aa4.65□□□□□ -1.67
TRAV28-201ENST00000557548 DOC2BQ14184 412 aa4.65□□□□□ -1.67
TRAV28-201ENST00000557548 ARSJQ5FYB0 599 aaPredicted RBP4.65□□□□□ -1.67
TRAV28-201ENST00000557548 ZNF662Q6ZS27 426 aa4.65□□□□□ -1.67
TRAV28-201ENST00000557548 GALNT12Q8IXK2 581 aa4.65□□□□□ -1.67
TRAV28-201ENST00000557548 C1orf127Q8N9H9 656 aa4.65□□□□□ -1.67
TRAV28-201ENST00000557548 ZIC5Q96T25 663 aa4.65□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 9.9 ms