RNA–Protein interactions for RNA: ENST00000552783.5

LIMA1-214, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,612 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-214ENST00000552783 NOL10Q9BSC4 688 aaKnown RBP5.69□□□□□ -1.5
LIMA1-214ENST00000552783 LGR6Q9HBX8 967 aa5.69□□□□□ -1.5
LIMA1-214ENST00000552783 USP42Q9H9J4 1324 aaKnown RBP5.69□□□□□ -1.5
LIMA1-214ENST00000552783 A2ML1A8K2U0 1454 aa5.69□□□□□ -1.5
LIMA1-214ENST00000552783 GOLGA6L19H0YKK7 550 aa5.69□□□□□ -1.5
LIMA1-214ENST00000552783 KCNA6P17658 529 aa5.69□□□□□ -1.5
LIMA1-214ENST00000552783 CDC25BP30305 580 aa5.69□□□□□ -1.5
LIMA1-214ENST00000552783 ARHGAP29Q52LW3 1261 aa5.69□□□□□ -1.5
LIMA1-214ENST00000552783 ISM2Q6H9L7 571 aa5.69□□□□□ -1.5
LIMA1-214ENST00000552783 KAZALD1Q96I82 304 aa5.69□□□□□ -1.5
LIMA1-214ENST00000552783 FMNL2Q96PY5 1086 aa5.69□□□□□ -1.5
LIMA1-214ENST00000552783 TMX1Q9H3N1 280 aa5.69□□□□□ -1.5
LIMA1-214ENST00000552783 NLRP2Q9NX02 1062 aa5.69□□□□□ -1.5
LIMA1-214ENST00000552783 LCMT1Q9UIC8 334 aa5.69□□□□□ -1.5
LIMA1-214ENST00000552783 BIN1O00499 593 aa5.69□□□□□ -1.5
LIMA1-214ENST00000552783 CTDNEP1O95476 244 aa5.69□□□□□ -1.5
LIMA1-214ENST00000552783 SCRN1Q12765 414 aa5.69□□□□□ -1.5
LIMA1-214ENST00000552783 DPCR1Q3MIW9 517 aa5.69□□□□□ -1.5
LIMA1-214ENST00000552783 THEMISQ8N1K5 641 aaPredicted RBP5.69□□□□□ -1.5
LIMA1-214ENST00000552783 TRIM34Q9BYJ4 488 aa5.69□□□□□ -1.5
LIMA1-214ENST00000552783 L2HGDHQ9H9P8 463 aa5.69□□□□□ -1.5
LIMA1-214ENST00000552783 NCOA5Q9HCD5 579 aaKnown RBP5.69□□□□□ -1.5
LIMA1-214ENST00000552783 ZKSCAN7Q9P0L1 754 aaPredicted RBP5.69□□□□□ -1.5
LIMA1-214ENST00000552783 NRXN3Q9Y4C0 1643 aa5.68□□□□□ -1.5
LIMA1-214ENST00000552783 KDRP35968 1356 aa5.68□□□□□ -1.5
LIMA1-214ENST00000552783 AKAP12Q02952 1782 aa5.68□□□□□ -1.5
LIMA1-214ENST00000552783 KDM4FA0A1W2PPD8 638 aa5.68□□□□□ -1.5
LIMA1-214ENST00000552783 BTBD11A6QL63 1104 aa5.68□□□□□ -1.5
LIMA1-214ENST00000552783 PIP4K2AP48426 406 aaPredicted RBP5.68□□□□□ -1.5
LIMA1-214ENST00000552783 CLASRPQ8N2M8 674 aaKnown RBP5.68□□□□□ -1.5
LIMA1-214ENST00000552783 ENGASEQ8NFI3 743 aa5.68□□□□□ -1.5
LIMA1-214ENST00000552783 XPO4Q9C0E2 1151 aaKnown RBP5.68□□□□□ -1.5
LIMA1-214ENST00000552783 GJB4Q9NTQ9 266 aa5.68□□□□□ -1.5
LIMA1-214ENST00000552783 SETD1BQ9UPS6 1966 aaKnown RBP5.68□□□□□ -1.5
LIMA1-214ENST00000552783 NEDD4P46934 1319 aa5.68□□□□□ -1.5
LIMA1-214ENST00000552783 IGSF1Q8N6C5 1336 aa5.68□□□□□ -1.5
LIMA1-214ENST00000552783 A0A1B0GVL5 298 aa5.68□□□□□ -1.5
LIMA1-214ENST00000552783 RAD51AP2Q09MP3 1159 aa5.68□□□□□ -1.5
LIMA1-214ENST00000552783 OTUD7BQ6GQQ9 843 aa5.68□□□□□ -1.5
LIMA1-214ENST00000552783 Q6ZUG5 572 aa5.68□□□□□ -1.5
LIMA1-214ENST00000552783 DNAAF4Q8WXU2 420 aa5.68□□□□□ -1.5
LIMA1-214ENST00000552783 SMARCE1Q969G3 411 aa5.68□□□□□ -1.5
LIMA1-214ENST00000552783 TTC41PQ6P2S7 1318 aa5.68□□□□□ -1.5
LIMA1-214ENST00000552783 BECN2A8MW95 431 aa5.68□□□□□ -1.5
LIMA1-214ENST00000552783 TRIM66O15016 1216 aa5.68□□□□□ -1.5
LIMA1-214ENST00000552783 ZRANB2O95218 330 aaKnown RBP eCLIP5.68□□□□□ -1.5
LIMA1-214ENST00000552783 ATP1A3P13637 1013 aa5.68□□□□□ -1.5
LIMA1-214ENST00000552783 STOX1Q6ZVD7 989 aa5.68□□□□□ -1.5
LIMA1-214ENST00000552783 CHST3Q7LGC8 479 aa5.68□□□□□ -1.5
LIMA1-214ENST00000552783 RIC3Q7Z5B4 369 aa5.68□□□□□ -1.5
LIMA1-214ENST00000552783 RUFY2Q8WXA3 655 aa5.68□□□□□ -1.5
LIMA1-214ENST00000552783 EVI5LQ96CN4 794 aa5.68□□□□□ -1.5
LIMA1-214ENST00000552783 IFNKQ9P0W0 207 aa5.68□□□□□ -1.5
LIMA1-214ENST00000552783 FEZ2Q9UHY8 353 aaPredicted RBP5.68□□□□□ -1.5
LIMA1-214ENST00000552783 TAF5LO75529 589 aa5.67□□□□□ -1.5
LIMA1-214ENST00000552783 PDCP20941 246 aa5.67□□□□□ -1.5
LIMA1-214ENST00000552783 CDK11BP21127 795 aaKnown RBP5.67□□□□□ -1.5
LIMA1-214ENST00000552783 CCT2P78371 535 aaKnown RBP5.67□□□□□ -1.5
LIMA1-214ENST00000552783 STX1AQ16623 288 aa5.67□□□□□ -1.5
LIMA1-214ENST00000552783 TMC6Q7Z403 805 aa5.67□□□□□ -1.5
LIMA1-214ENST00000552783 DPF2Q92785 391 aa5.67□□□□□ -1.5
LIMA1-214ENST00000552783 GPATCH3Q96I76 525 aa5.67□□□□□ -1.5
LIMA1-214ENST00000552783 FSD1Q9BTV5 496 aa5.67□□□□□ -1.5
LIMA1-214ENST00000552783 FLT4P35916 1363 aa5.67□□□□□ -1.5
LIMA1-214ENST00000552783 USP6P35125 1406 aa5.67□□□□□ -1.5
LIMA1-214ENST00000552783 CCDC66A2RUB6 948 aa5.67□□□□□ -1.5
LIMA1-214ENST00000552783 H3BQV1 296 aa5.67□□□□□ -1.5
LIMA1-214ENST00000552783 CYP21A2P08686 494 aa5.67□□□□□ -1.5
LIMA1-214ENST00000552783 IFFO2Q5TF58 517 aa5.67□□□□□ -1.5
LIMA1-214ENST00000552783 TRIM65Q6PJ69 517 aa5.67□□□□□ -1.5
LIMA1-214ENST00000552783 FAM177A1Q8N128 213 aaPredicted RBP5.67□□□□□ -1.5
LIMA1-214ENST00000552783 CCDC34Q96HJ3 373 aa5.67□□□□□ -1.5
LIMA1-214ENST00000552783 SUCLG2Q96I99 432 aa5.67□□□□□ -1.5
LIMA1-214ENST00000552783 HSD3B7Q9H2F3 369 aa5.67□□□□□ -1.5
LIMA1-214ENST00000552783 GPHNQ9NQX3 736 aaPredicted RBP5.67□□□□□ -1.5
LIMA1-214ENST00000552783 DNAI1Q9UI46 699 aa5.67□□□□□ -1.5
LIMA1-214ENST00000552783 PHF8Q9UPP1 1060 aa5.67□□□□□ -1.5
LIMA1-214ENST00000552783 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP5.67□□□□□ -1.54e-6■■■■□ 22
LIMA1-214ENST00000552783 USP31Q70CQ4 1352 aa5.67□□□□□ -1.5
LIMA1-214ENST00000552783 ITSN1Q15811 1721 aa5.67□□□□□ -1.5
LIMA1-214ENST00000552783 SMC2O95347 1197 aa5.67□□□□□ -1.5
LIMA1-214ENST00000552783 HSP90B1P14625 803 aaKnown RBP5.67□□□□□ -1.5
LIMA1-214ENST00000552783 NDUFA8P51970 172 aa5.67□□□□□ -1.5
LIMA1-214ENST00000552783 EIF4A1P60842 406 aaKnown RBP5.67□□□□□ -1.5
LIMA1-214ENST00000552783 G3BP1Q13283 466 aaKnown RBP eCLIP5.67□□□□□ -1.5
LIMA1-214ENST00000552783 FSIP1Q8NA03 581 aa5.67□□□□□ -1.5
LIMA1-214ENST00000552783 IPO4Q8TEX9 1081 aaKnown RBP5.67□□□□□ -1.5
LIMA1-214ENST00000552783 BICC1Q9H694 974 aaKnown RBP5.67□□□□□ -1.5
LIMA1-214ENST00000552783 ORC3Q9UBD5 711 aaPredicted RBP5.67□□□□□ -1.5
LIMA1-214ENST00000552783 RCOR1Q9UKL0 485 aa5.67□□□□□ -1.5
LIMA1-214ENST00000552783 MAP3K2Q9Y2U5 619 aa5.67□□□□□ -1.5
LIMA1-214ENST00000552783 ADAMTSL3P82987 1691 aa5.67□□□□□ -1.5
LIMA1-214ENST00000552783 MED23Q9ULK4 1368 aa5.67□□□□□ -1.5
LIMA1-214ENST00000552783 HOXC9P31274 260 aa5.66□□□□□ -1.5
LIMA1-214ENST00000552783 ME1P48163 572 aa5.66□□□□□ -1.5
LIMA1-214ENST00000552783 APOBRQ0VD83 1088 aa5.66□□□□□ -1.5
LIMA1-214ENST00000552783 SLC39A6Q13433 755 aa5.66□□□□□ -1.5
LIMA1-214ENST00000552783 HSP90AA4PQ58FG1 418 aa5.66□□□□□ -1.5
LIMA1-214ENST00000552783 NSUN7Q8NE18 718 aaKnown RBP5.66□□□□□ -1.5
LIMA1-214ENST00000552783 CARD6Q9BX69 1037 aa5.66□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms