RNA–Protein interactions for RNA: ENST00000548259.1

VPS29-204, Transcript of VPS29, retromer complex component, humanhuman

TSL 2

Gene VPS29, Length 563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-204ENST00000548259 EGFRP00533 1210 aa22.02■■□□□ 1.12
VPS29-204ENST00000548259 VIL1P09327 827 aaKnown RBP22.02■■□□□ 1.12
VPS29-204ENST00000548259 FKBP1BP68106 108 aa22.02■■□□□ 1.12
VPS29-204ENST00000548259 CTU1Q7Z7A3 348 aaKnown RBP22.02■■□□□ 1.12
VPS29-204ENST00000548259 TBC1D16Q8TBP0 767 aa22.02■■□□□ 1.12
VPS29-204ENST00000548259 ISCA1Q9BUE6 129 aa22.02■■□□□ 1.12
VPS29-204ENST00000548259 HYPKQ9NX55 129 aa22.02■■□□□ 1.12
VPS29-204ENST00000548259 ANKIB1Q9P2G1 1089 aa22.02■■□□□ 1.12
VPS29-204ENST00000548259 LAS1LQ9Y4W2 734 aaKnown RBP22.02■■□□□ 1.12
VPS29-204ENST00000548259 IRS4O14654 1257 aaPredicted RBP22.01■■□□□ 1.11
VPS29-204ENST00000548259 ATP5J2-PTCD1G3V325 749 aa22■■□□□ 1.11
VPS29-204ENST00000548259 CHL1O00533 1208 aa22■■□□□ 1.11
VPS29-204ENST00000548259 SOX10P56693 466 aa22■■□□□ 1.11
VPS29-204ENST00000548259 TRIM28Q13263 835 aaKnown RBP22■■□□□ 1.11
VPS29-204ENST00000548259 AGBL3Q8NEM8 1001 aa22■■□□□ 1.11
VPS29-204ENST00000548259 ZNF428Q96B54 188 aa22■■□□□ 1.11
VPS29-204ENST00000548259 CDCA5Q96FF9 252 aa22■■□□□ 1.11
VPS29-204ENST00000548259 CSRNP1Q96S65 589 aa22■■□□□ 1.11
VPS29-204ENST00000548259 PODXL2Q9NZ53 605 aa22■■□□□ 1.11
VPS29-204ENST00000548259 RTL9Q8NET4 1388 aa21.99■■□□□ 1.11
VPS29-204ENST00000548259 UFL1O94874 794 aa21.99■■□□□ 1.11
VPS29-204ENST00000548259 PKN2Q16513 984 aaKnown RBP21.99■■□□□ 1.11
VPS29-204ENST00000548259 RTL5Q5HYW3 569 aaPredicted RBP21.99■■□□□ 1.11
VPS29-204ENST00000548259 KCNQ5Q9NR82 932 aa21.99■■□□□ 1.11
VPS29-204ENST00000548259 GGA1Q9UJY5 639 aa21.99■■□□□ 1.11
VPS29-204ENST00000548259 LAMB2P55268 1798 aa21.99■■□□□ 1.11
VPS29-204ENST00000548259 LRRC37AA6NMS7 1700 aa21.98■■□□□ 1.11
VPS29-204ENST00000548259 NEUROD2Q15784 382 aa21.98■■□□□ 1.11
VPS29-204ENST00000548259 GOLGA2Q08379 1002 aa21.97■■□□□ 1.11
VPS29-204ENST00000548259 SCARF1Q14162 830 aa21.97■■□□□ 1.11
VPS29-204ENST00000548259 RALBP1Q15311 655 aa21.97■■□□□ 1.11
VPS29-204ENST00000548259 ANGEL2Q5VTE6 544 aaKnown RBP21.97■■□□□ 1.11
VPS29-204ENST00000548259 RSBN1LQ6PCB5 846 aaPredicted RBP21.97■■□□□ 1.11
VPS29-204ENST00000548259 HDAC9Q9UKV0 1011 aa21.97■■□□□ 1.11
VPS29-204ENST00000548259 PDE4DIPQ5VU43 2346 aa21.96■■□□□ 1.11
VPS29-204ENST00000548259 ZNF280AP59817 542 aaPredicted RBP21.96■■□□□ 1.11
VPS29-204ENST00000548259 KRT24Q2M2I5 525 aa21.96■■□□□ 1.11
VPS29-204ENST00000548259 CCDC152Q4G0S7 254 aa21.96■■□□□ 1.11
VPS29-204ENST00000548259 RIC3Q7Z5B4 369 aa21.96■■□□□ 1.11
VPS29-204ENST00000548259 ZBTB38Q8NAP3 1195 aaPredicted RBP21.96■■□□□ 1.11
VPS29-204ENST00000548259 PRPF38BQ5VTL8 546 aaKnown RBP21.95■■□□□ 1.1
VPS29-204ENST00000548259 RASAL3Q86YV0 1011 aa21.95■■□□□ 1.1
VPS29-204ENST00000548259 PITPNM2Q9BZ72 1349 aa21.95■■□□□ 1.1
VPS29-204ENST00000548259 USP17L8P0C7I0 530 aa21.94■■□□□ 1.1
VPS29-204ENST00000548259 ZNF609O15014 1411 aa21.93■■□□□ 1.1
VPS29-204ENST00000548259 NF2P35240 595 aa21.93■■□□□ 1.1
VPS29-204ENST00000548259 MYOZ2Q9NPC6 264 aa21.93■■□□□ 1.1
VPS29-204ENST00000548259 DDX60Q8IY21 1712 aaKnown RBP21.92■■□□□ 1.1
VPS29-204ENST00000548259 USP17L3A6NCW0 530 aa21.92■■□□□ 1.1
VPS29-204ENST00000548259 USP17L4A6NCW7 530 aa21.92■■□□□ 1.1
VPS29-204ENST00000548259 WDR43Q15061 677 aaKnown RBP eCLIP21.92■■□□□ 1.1
VPS29-204ENST00000548259 USP17L1Q7RTZ2 530 aa21.92■■□□□ 1.1
VPS29-204ENST00000548259 PODNQ7Z5L7 613 aa21.92■■□□□ 1.1
VPS29-204ENST00000548259 RUNDC1Q96C34 613 aa21.92■■□□□ 1.1
VPS29-204ENST00000548259 TNRC18O15417 2968 aaPredicted RBP21.91■■□□□ 1.1
VPS29-204ENST00000548259 ASTN2O75129 1339 aaPredicted RBP21.91■■□□□ 1.1
VPS29-204ENST00000548259 XDHP47989 1333 aa21.91■■□□□ 1.1
VPS29-204ENST00000548259 DUSP27Q5VZP5 1158 aa21.91■■□□□ 1.1
VPS29-204ENST00000548259 ANKRD18AQ8IVF6 992 aa21.91■■□□□ 1.1
VPS29-204ENST00000548259 OGFOD1Q8N543 542 aa21.91■■□□□ 1.1
VPS29-204ENST00000548259 CHMP4AQ9BY43 222 aa21.91■■□□□ 1.1
VPS29-204ENST00000548259 HPS5Q9UPZ3 1129 aa21.91■■□□□ 1.1
VPS29-204ENST00000548259 PDE8AO60658 829 aa21.9■■□□□ 1.1
VPS29-204ENST00000548259 ATP2B4P23634 1241 aa21.9■■□□□ 1.1
VPS29-204ENST00000548259 TTLL12Q14166 644 aaPredicted RBP21.9■■□□□ 1.1
VPS29-204ENST00000548259 CCDC146Q8IYE0 955 aa21.9■■□□□ 1.1
VPS29-204ENST00000548259 CCDC191Q8NCU4 936 aa21.9■■□□□ 1.1
VPS29-204ENST00000548259 SEC31BQ9NQW1 1179 aa21.9■■□□□ 1.1
VPS29-204ENST00000548259 TAF1P21675 1872 aa21.89■■□□□ 1.09
VPS29-204ENST00000548259 PCCAP05165 728 aaPredicted RBP21.88■■□□□ 1.09
VPS29-204ENST00000548259 SREBF2Q12772 1141 aa21.88■■□□□ 1.09
VPS29-204ENST00000548259 CDC5LQ99459 802 aaKnown RBP21.88■■□□□ 1.09
VPS29-204ENST00000548259 CWC25Q9NXE8 425 aaPredicted RBP21.88■■□□□ 1.09
VPS29-204ENST00000548259 TRIM35Q9UPQ4 493 aa21.88■■□□□ 1.09
VPS29-204ENST00000548259 AKAP11Q9UKA4 1901 aa21.88■■□□□ 1.09
VPS29-204ENST00000548259 DDX58O95786 925 aaKnown RBP21.87■■□□□ 1.09
VPS29-204ENST00000548259 MMP14P50281 582 aa21.87■■□□□ 1.09
VPS29-204ENST00000548259 NOM1Q5C9Z4 860 aaKnown RBP21.87■■□□□ 1.09
VPS29-204ENST00000548259 ZNF296Q8WUU4 475 aaPredicted RBP21.87■■□□□ 1.09
VPS29-204ENST00000548259 GMLQ99445 158 aa21.87■■□□□ 1.09
VPS29-204ENST00000548259 MYD88Q99836 296 aa21.87■■□□□ 1.09
VPS29-204ENST00000548259 PAPPA2Q9BXP8 1791 aa21.87■■□□□ 1.09
VPS29-204ENST00000548259 TBC1D8O95759 1140 aa21.86■■□□□ 1.09
VPS29-204ENST00000548259 CALD1Q05682 793 aaKnown RBP21.86■■□□□ 1.09
VPS29-204ENST00000548259 MYO3BQ8WXR4 1341 aa21.85■■□□□ 1.09
VPS29-204ENST00000548259 UBE2Q2LH0YL09 131 aa21.85■■□□□ 1.09
VPS29-204ENST00000548259 TM4SF4P48230 202 aa21.84■■□□□ 1.09
VPS29-204ENST00000548259 ARMC9Q7Z3E5 817 aa21.84■■□□□ 1.09
VPS29-204ENST00000548259 CCDC85AQ96PX6 553 aaPredicted RBP21.84■■□□□ 1.09
VPS29-204ENST00000548259 POLR2AP24928 1970 aaKnown RBP21.84■■□□□ 1.09
VPS29-204ENST00000548259 MYBBP1AQ9BQG0 1328 aaKnown RBP21.83■■□□□ 1.09
VPS29-204ENST00000548259 GPR25O00155 361 aa21.83■■□□□ 1.09
VPS29-204ENST00000548259 FBXO46Q6PJ61 603 aaPredicted RBP21.83■■□□□ 1.09
VPS29-204ENST00000548259 GCC1Q96CN9 775 aa21.83■■□□□ 1.09
VPS29-204ENST00000548259 MOB2Q70IA6 237 aa21.82■■□□□ 1.08
VPS29-204ENST00000548259 FBXW7Q969H0 707 aa21.82■■□□□ 1.08
VPS29-204ENST00000548259 MBIPQ9NS73 344 aa21.82■■□□□ 1.08
VPS29-204ENST00000548259 MED23Q9ULK4 1368 aa21.82■■□□□ 1.08
VPS29-204ENST00000548259 FKTNO75072 461 aa21.81■■□□□ 1.08
VPS29-204ENST00000548259 ALDH1A1P00352 501 aa21.81■■□□□ 1.08
Retrieved 100 of 20,778 RNA–protein pairs in 77.3 ms