RNA–Protein interactions for RNA: ENST00000547394.6

CUX1-212, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,878 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-212ENST00000547394 RPAP1Q9BWH6 1393 aaPredicted RBP13.27□□□□□ -0.29
CUX1-212ENST00000547394 LOC102724428A0A0B4J2F2 783 aa13.27□□□□□ -0.29
CUX1-212ENST00000547394 CYP21A2P08686 494 aa13.27□□□□□ -0.29
CUX1-212ENST00000547394 GJB2P29033 226 aa13.27□□□□□ -0.29
CUX1-212ENST00000547394 ZAP70P43403 619 aa13.27□□□□□ -0.29
CUX1-212ENST00000547394 SIK1P57059 783 aa13.27□□□□□ -0.29
CUX1-212ENST00000547394 TTC39AQ5SRH9 613 aa13.27□□□□□ -0.29
CUX1-212ENST00000547394 BICDL1Q6ZP65 573 aa13.27□□□□□ -0.29
CUX1-212ENST00000547394 FERMT3Q86UX7 667 aa13.27□□□□□ -0.29
CUX1-212ENST00000547394 SEC31BQ9NQW1 1179 aa13.27□□□□□ -0.29
CUX1-212ENST00000547394 VPS37CA5D8V6 355 aaPredicted RBP13.26□□□□□ -0.29
CUX1-212ENST00000547394 UBAP1LF5GYI3 381 aa13.26□□□□□ -0.29
CUX1-212ENST00000547394 SYT1P21579 422 aa13.26□□□□□ -0.29
CUX1-212ENST00000547394 HAND2P61296 217 aa13.26□□□□□ -0.29
CUX1-212ENST00000547394 WASHC4Q2M389 1173 aa13.26□□□□□ -0.29
CUX1-212ENST00000547394 MCMDC2Q4G0Z9 681 aa13.26□□□□□ -0.29
CUX1-212ENST00000547394 SUSD4Q5VX71 490 aa13.26□□□□□ -0.29
CUX1-212ENST00000547394 FAM173BQ6P4H8 233 aa13.26□□□□□ -0.29
CUX1-212ENST00000547394 INTS5Q6P9B9 1019 aaKnown RBP13.26□□□□□ -0.29
CUX1-212ENST00000547394 BLOC1S2Q6QNY1 142 aa13.26□□□□□ -0.29
CUX1-212ENST00000547394 CCDC24Q8N4L8 307 aa13.26□□□□□ -0.29
CUX1-212ENST00000547394 NGLY1Q96IV0 654 aa13.26□□□□□ -0.29
CUX1-212ENST00000547394 TAOK2Q9UL54 1235 aa13.26□□□□□ -0.29
CUX1-212ENST00000547394 M0R2C6 588 aa13.26□□□□□ -0.29
CUX1-212ENST00000547394 CTSWP56202 376 aa13.26□□□□□ -0.29
CUX1-212ENST00000547394 STOX1Q6ZVD7 989 aa13.26□□□□□ -0.29
CUX1-212ENST00000547394 NAP1L2Q9ULW6 460 aaPredicted RBP13.26□□□□□ -0.29
CUX1-212ENST00000547394 IL17RAQ96F46 866 aa13.26□□□□□ -0.29
CUX1-212ENST00000547394 INTS4Q96HW7 963 aaKnown RBP13.26□□□□□ -0.29
CUX1-212ENST00000547394 GRPEL1Q9HAV7 217 aa13.26□□□□□ -0.29
CUX1-212ENST00000547394 CNPY2Q9Y2B0 182 aa13.26□□□□□ -0.29
CUX1-212ENST00000547394 WTIPA6NIX2 430 aaPredicted RBP13.25□□□□□ -0.29
CUX1-212ENST00000547394 CLEC17AQ6ZS10 378 aa13.25□□□□□ -0.29
CUX1-212ENST00000547394 OSBP2Q969R2 916 aa13.25□□□□□ -0.29
CUX1-212ENST00000547394 TOB2Q14106 344 aaPredicted RBP13.25□□□□□ -0.29
CUX1-212ENST00000547394 KLHL40Q2TBA0 621 aa13.25□□□□□ -0.29
CUX1-212ENST00000547394 COL14A1Q05707 1796 aaKnown RBP13.25□□□□□ -0.29
CUX1-212ENST00000547394 CSF1RP07333 972 aa13.24□□□□□ -0.29
CUX1-212ENST00000547394 ATP2B3Q16720 1220 aa13.24□□□□□ -0.29
CUX1-212ENST00000547394 TMEM63CQ9P1W3 806 aa13.24□□□□□ -0.29
CUX1-212ENST00000547394 MAST3O60307 1309 aa13.24□□□□□ -0.29
CUX1-212ENST00000547394 TNKS1BP1Q9C0C2 1729 aaKnown RBP13.24□□□□□ -0.29
CUX1-212ENST00000547394 FIBPO43427 364 aa13.24□□□□□ -0.29
CUX1-212ENST00000547394 RPS6KB1P23443 525 aa13.24□□□□□ -0.29
CUX1-212ENST00000547394 TRIM28Q13263 835 aaKnown RBP13.24□□□□□ -0.29
CUX1-212ENST00000547394 ZSCAN23Q3MJ62 389 aa13.24□□□□□ -0.29
CUX1-212ENST00000547394 RAB11FIP4Q86YS3 637 aa13.24□□□□□ -0.29
CUX1-212ENST00000547394 GPHNQ9NQX3 736 aaPredicted RBP13.24□□□□□ -0.29
CUX1-212ENST00000547394 CCDC87Q9NVE4 849 aa13.24□□□□□ -0.29
CUX1-212ENST00000547394 SPATA31A5Q5VU36 1347 aa13.24□□□□□ -0.29
CUX1-212ENST00000547394 SPATA31A7Q8IWB4 1347 aa13.24□□□□□ -0.29
CUX1-212ENST00000547394 STX6O43752 255 aa13.23□□□□□ -0.29
CUX1-212ENST00000547394 JAK2O60674 1132 aa13.23□□□□□ -0.29
CUX1-212ENST00000547394 HSP90B1P14625 803 aaKnown RBP13.23□□□□□ -0.29
CUX1-212ENST00000547394 SKOR2Q2VWA4 1001 aaPredicted RBP13.23□□□□□ -0.29
CUX1-212ENST00000547394 CCDC158Q5M9N0 1113 aa13.23□□□□□ -0.29
CUX1-212ENST00000547394 L1TD1Q5T7N2 865 aaKnown RBP13.23□□□□□ -0.29
CUX1-212ENST00000547394 RNF20Q5VTR2 975 aa13.23□□□□□ -0.29
CUX1-212ENST00000547394 DDX11Q96FC9 970 aa13.23□□□□□ -0.29
CUX1-212ENST00000547394 IQSEC3Q9UPP2 1182 aaPredicted RBP13.23□□□□□ -0.29
CUX1-212ENST00000547394 RIPOR2Q9Y4F9 1068 aa13.23□□□□□ -0.29
CUX1-212ENST00000547394 SYCE3A1L190 88 aa13.23□□□□□ -0.29
CUX1-212ENST00000547394 ANKRD18BA2A2Z9 1011 aa13.23□□□□□ -0.29
CUX1-212ENST00000547394 FGD1P98174 961 aa13.23□□□□□ -0.29
CUX1-212ENST00000547394 USP48Q86UV5 1035 aa13.23□□□□□ -0.29
CUX1-212ENST00000547394 KCNB2Q92953 911 aa13.23□□□□□ -0.29
CUX1-212ENST00000547394 NIP7Q9Y221 180 aaKnown RBP eCLIP13.23□□□□□ -0.292e-10■■■■■ 60.1
CUX1-212ENST00000547394 EPB41L2O43491 1005 aaKnown RBP13.22□□□□□ -0.29
CUX1-212ENST00000547394 CIAO1O76071 339 aa13.22□□□□□ -0.29
CUX1-212ENST00000547394 IL6STP40189 918 aaPredicted RBP13.22□□□□□ -0.29
CUX1-212ENST00000547394 MCAMP43121 646 aa13.22□□□□□ -0.29
CUX1-212ENST00000547394 PHKA1P46020 1223 aa13.22□□□□□ -0.29
CUX1-212ENST00000547394 EIF5P55010 431 aaKnown RBP13.22□□□□□ -0.29
CUX1-212ENST00000547394 Q6ZUG5 572 aa13.22□□□□□ -0.29
CUX1-212ENST00000547394 PUS7LQ9H0K6 701 aaKnown RBP13.22□□□□□ -0.29
CUX1-212ENST00000547394 PALLDQ8WX93 1383 aa13.22□□□□□ -0.29
CUX1-212ENST00000547394 HSPD1P10809 573 aaKnown RBP13.22□□□□□ -0.29
CUX1-212ENST00000547394 BRF1Q92994 677 aa13.22□□□□□ -0.29
CUX1-212ENST00000547394 NEK1Q96PY6 1258 aa13.22□□□□□ -0.29
CUX1-212ENST00000547394 DOT1LQ8TEK3 1739 aa13.22□□□□□ -0.29
CUX1-212ENST00000547394 SLIT2O94813 1529 aa13.22□□□□□ -0.29
CUX1-212ENST00000547394 RNF113AO15541 343 aaKnown RBP13.22□□□□□ -0.29
CUX1-212ENST00000547394 IDH1O75874 414 aaKnown RBP13.22□□□□□ -0.29
CUX1-212ENST00000547394 PSMA5P28066 241 aa13.22□□□□□ -0.29
CUX1-212ENST00000547394 DNM1Q05193 864 aaKnown RBP13.22□□□□□ -0.29
CUX1-212ENST00000547394 TM6SF1Q9BZW5 370 aa13.22□□□□□ -0.29
CUX1-212ENST00000547394 DENND2AQ9ULE3 1009 aa13.22□□□□□ -0.29
CUX1-212ENST00000547394 LTBP4Q8N2S1 1624 aa13.22□□□□□ -0.29
CUX1-212ENST00000547394 RIC1Q4ADV7 1423 aa13.21□□□□□ -0.29
CUX1-212ENST00000547394 WDR33Q9C0J8 1336 aaKnown RBP13.21□□□□□ -0.29
CUX1-212ENST00000547394 ZSCAN22P10073 491 aaPredicted RBP13.21□□□□□ -0.29
CUX1-212ENST00000547394 ZMYM1Q5SVZ6 1142 aa13.21□□□□□ -0.29
CUX1-212ENST00000547394 CDC37L1Q7L3B6 337 aa13.21□□□□□ -0.29
CUX1-212ENST00000547394 ZSCAN21Q9Y5A6 473 aaPredicted RBP13.21□□□□□ -0.29
CUX1-212ENST00000547394 PHLPP1O60346 1717 aa13.21□□□□□ -0.29
CUX1-212ENST00000547394 TOM1O60784 492 aa13.21□□□□□ -0.3
CUX1-212ENST00000547394 CCT2P78371 535 aaKnown RBP13.21□□□□□ -0.3
CUX1-212ENST00000547394 C3orf67Q6ZVT6 689 aa13.21□□□□□ -0.3
CUX1-212ENST00000547394 ZNF34Q8IZ26 560 aa13.21□□□□□ -0.3
CUX1-212ENST00000547394 STK11IPQ8N1F8 1099 aa13.21□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms