RNA–Protein interactions for RNA: ENST00000546411.6

CUX1-211, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,212 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-211ENST00000546411 DHX8Q14562 1220 aaKnown RBP18.22■□□□□ 0.51
CUX1-211ENST00000546411 DNAJC10Q8IXB1 793 aa18.22■□□□□ 0.51
CUX1-211ENST00000546411 CNNM3Q8NE01 707 aa18.22■□□□□ 0.51
CUX1-211ENST00000546411 CDK12Q9NYV4 1490 aaPredicted RBP18.22■□□□□ 0.51
CUX1-211ENST00000546411 BTG4Q9NY30 223 aa18.22■□□□□ 0.51
CUX1-211ENST00000546411 CFAP74Q9C0B2 1584 aa18.22■□□□□ 0.51
CUX1-211ENST00000546411 TNNT1P13805 278 aa18.22■□□□□ 0.51
CUX1-211ENST00000546411 TXLNAP40222 546 aa18.22■□□□□ 0.51
CUX1-211ENST00000546411 ARHGEF25Q86VW2 580 aa18.22■□□□□ 0.51
CUX1-211ENST00000546411 ALG1Q9BT22 464 aa18.22■□□□□ 0.51
CUX1-211ENST00000546411 TMX1Q9H3N1 280 aa18.22■□□□□ 0.51
CUX1-211ENST00000546411 FILIP1LQ4L180 1135 aa18.21■□□□□ 0.51
CUX1-211ENST00000546411 MFSD6Q6ZSS7 791 aa18.21■□□□□ 0.51
CUX1-211ENST00000546411 DZIP3Q86Y13 1208 aaKnown RBP18.21■□□□□ 0.51
CUX1-211ENST00000546411 PPRC1Q5VV67 1664 aaKnown RBP18.21■□□□□ 0.51
CUX1-211ENST00000546411 NAP1L1P55209 391 aaKnown RBP18.21■□□□□ 0.51
CUX1-211ENST00000546411 ANKIB1Q9P2G1 1089 aa18.21■□□□□ 0.51
CUX1-211ENST00000546411 JAG2Q9Y219 1238 aa18.21■□□□□ 0.51
CUX1-211ENST00000546411 RRP9O43818 475 aaKnown RBP18.21■□□□□ 0.51
CUX1-211ENST00000546411 ATP6V1AP38606 617 aa18.21■□□□□ 0.51
CUX1-211ENST00000546411 SSRP1Q08945 709 aaKnown RBP18.21■□□□□ 0.51
CUX1-211ENST00000546411 PTPN14Q15678 1187 aa18.21■□□□□ 0.51
CUX1-211ENST00000546411 ZNF652Q9Y2D9 606 aa18.21■□□□□ 0.51
CUX1-211ENST00000546411 PHKG2P15735 406 aa18.2■□□□□ 0.5
CUX1-211ENST00000546411 NOLC1Q14978 699 aaKnown RBP eCLIP18.2■□□□□ 0.57e-6■■■□□ 16.5
CUX1-211ENST00000546411 ALKQ9UM73 1620 aa18.2■□□□□ 0.5
CUX1-211ENST00000546411 ZNF445P59923 1031 aa18.2■□□□□ 0.5
CUX1-211ENST00000546411 ERCC4Q92889 916 aaPredicted RBP18.2■□□□□ 0.5
CUX1-211ENST00000546411 NGLY1Q96IV0 654 aa18.2■□□□□ 0.5
CUX1-211ENST00000546411 ZKSCAN3Q9BRR0 538 aa18.2■□□□□ 0.5
CUX1-211ENST00000546411 PRDM10Q9NQV6 1147 aa18.2■□□□□ 0.5
CUX1-211ENST00000546411 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP18.2■□□□□ 0.5
CUX1-211ENST00000546411 QRICH2Q9H0J4 1663 aa18.2■□□□□ 0.5
CUX1-211ENST00000546411 PTCH1Q13635 1447 aa18.2■□□□□ 0.5
CUX1-211ENST00000546411 ZBTB43O43298 467 aa18.2■□□□□ 0.5
CUX1-211ENST00000546411 TMC6Q7Z403 805 aa18.2■□□□□ 0.5
CUX1-211ENST00000546411 CPLX3Q8WVH0 158 aa18.2■□□□□ 0.5
CUX1-211ENST00000546411 OSBPL3Q9H4L5 887 aa18.2■□□□□ 0.5
CUX1-211ENST00000546411 NIP7Q9Y221 180 aaKnown RBP eCLIP18.2■□□□□ 0.5
CUX1-211ENST00000546411 AOX1Q06278 1338 aa18.2■□□□□ 0.5
CUX1-211ENST00000546411 STX1AQ16623 288 aa18.19■□□□□ 0.5
CUX1-211ENST00000546411 UVSSAQ2YD98 709 aa18.19■□□□□ 0.5
CUX1-211ENST00000546411 GOLGA6L1Q8N7Z2 621 aa18.19■□□□□ 0.5
CUX1-211ENST00000546411 NOL7Q9UMY1 257 aaKnown RBP18.19■□□□□ 0.5
CUX1-211ENST00000546411 LRRC7Q96NW7 1537 aa18.19■□□□□ 0.5
CUX1-211ENST00000546411 USP5P45974 858 aa18.19■□□□□ 0.5
CUX1-211ENST00000546411 PPFIBP1Q86W92 1011 aa18.19■□□□□ 0.5
CUX1-211ENST00000546411 WASF1Q92558 559 aa18.19■□□□□ 0.5
CUX1-211ENST00000546411 ZPR1O75312 459 aa18.19■□□□□ 0.5
CUX1-211ENST00000546411 ZFYP08048 801 aaPredicted RBP18.19■□□□□ 0.5
CUX1-211ENST00000546411 TTF1Q15361 905 aaPredicted RBP18.19■□□□□ 0.5
CUX1-211ENST00000546411 MTERF4Q7Z6M4 381 aaKnown RBP18.19■□□□□ 0.5
CUX1-211ENST00000546411 IQCA1Q86XH1 822 aa18.19■□□□□ 0.5
CUX1-211ENST00000546411 PODXL2Q9NZ53 605 aa18.19■□□□□ 0.5
CUX1-211ENST00000546411 TPCN1Q9ULQ1 816 aa18.19■□□□□ 0.5
CUX1-211ENST00000546411 MKNK2Q9HBH9 465 aa18.19■□□□□ 0.5
CUX1-211ENST00000546411 STAP2Q9UGK3 403 aa18.19■□□□□ 0.5
CUX1-211ENST00000546411 NLRP1Q9C000 1473 aa18.18■□□□□ 0.5
CUX1-211ENST00000546411 A0A1B0GVL5 298 aa18.18■□□□□ 0.5
CUX1-211ENST00000546411 SMTNL1A8MU46 457 aa18.18■□□□□ 0.5
CUX1-211ENST00000546411 CTAGE5O15320 804 aa18.18■□□□□ 0.5
CUX1-211ENST00000546411 PTGS1P23219 599 aa18.18■□□□□ 0.5
CUX1-211ENST00000546411 KBTBD3Q8NAB2 608 aa18.18■□□□□ 0.5
CUX1-211ENST00000546411 CYP7A1P22680 504 aa18.18■□□□□ 0.5
CUX1-211ENST00000546411 DZIP1Q86YF9 867 aaKnown RBP18.18■□□□□ 0.5
CUX1-211ENST00000546411 AOPEPQ8N6M6 819 aa18.18■□□□□ 0.5
CUX1-211ENST00000546411 SLC4A4Q9Y6R1 1079 aa18.18■□□□□ 0.5
CUX1-211ENST00000546411 XAGE2Q96GT9 111 aa18.17■□□□□ 0.5
CUX1-211ENST00000546411 CCDC196A0A1B0GTZ2 297 aa18.17■□□□□ 0.5
CUX1-211ENST00000546411 SSBP05455 408 aaKnown RBP eCLIP18.17■□□□□ 0.5
CUX1-211ENST00000546411 CBX1P83916 185 aa18.17■□□□□ 0.5
CUX1-211ENST00000546411 PDCL2Q8N4E4 241 aa18.17■□□□□ 0.5
CUX1-211ENST00000546411 CTCFLQ8NI51 663 aaPredicted RBP18.17■□□□□ 0.5
CUX1-211ENST00000546411 ZHX3Q9H4I2 956 aa18.17■□□□□ 0.5
CUX1-211ENST00000546411 NSFL1CQ9UNZ2 370 aaKnown RBP18.17■□□□□ 0.5
CUX1-211ENST00000546411 ITGA6P23229 1130 aa18.17■□□□□ 0.5
CUX1-211ENST00000546411 LMOD1P29536 600 aaPredicted RBP18.17■□□□□ 0.5
CUX1-211ENST00000546411 LRRC24Q50LG9 513 aa18.17■□□□□ 0.5
CUX1-211ENST00000546411 LSG1Q9H089 658 aaKnown RBP18.17■□□□□ 0.5
CUX1-211ENST00000546411 ARGLU1Q9NWB6 273 aaPredicted RBP18.17■□□□□ 0.5
CUX1-211ENST00000546411 MAGEB6Q8N7X4 407 aa18.16■□□□□ 0.5
CUX1-211ENST00000546411 MRPS27Q92552 414 aaKnown RBP18.16■□□□□ 0.5
CUX1-211ENST00000546411 AXIN2Q9Y2T1 843 aa18.16■□□□□ 0.5
CUX1-211ENST00000546411 PCDH11XQ9BZA7 1347 aa18.16■□□□□ 0.5
CUX1-211ENST00000546411 PCDH11YQ9BZA8 1340 aa18.16■□□□□ 0.5
CUX1-211ENST00000546411 CDK5RAP3Q96JB5 506 aa18.16■□□□□ 0.5
CUX1-211ENST00000546411 TAF5LO75529 589 aa18.16■□□□□ 0.5
CUX1-211ENST00000546411 SYKP43405 635 aa18.16■□□□□ 0.5
CUX1-211ENST00000546411 DBNLQ9UJU6 430 aaKnown RBP18.16■□□□□ 0.5
CUX1-211ENST00000546411 B4E1Z4 1266 aa18.15■□□□□ 0.5
CUX1-211ENST00000546411 KIF2CQ99661 725 aa18.15■□□□□ 0.5
CUX1-211ENST00000546411 ABCA9Q8IUA7 1624 aa18.15■□□□□ 0.5
CUX1-211ENST00000546411 ZAP70P43403 619 aa18.15■□□□□ 0.5
CUX1-211ENST00000546411 WTAPQ15007 396 aa18.15■□□□□ 0.5
CUX1-211ENST00000546411 MYL10Q9BUA6 226 aa18.15■□□□□ 0.5
CUX1-211ENST00000546411 ZNF589Q86UQ0 364 aaPredicted RBP18.15■□□□□ 0.5
CUX1-211ENST00000546411 FSD2A1L4K1 749 aa18.14■□□□□ 0.49
CUX1-211ENST00000546411 CCDC24Q8N4L8 307 aa18.14■□□□□ 0.49
CUX1-211ENST00000546411 CCDC191Q8NCU4 936 aa18.14■□□□□ 0.49
CUX1-211ENST00000546411 CDC5LQ99459 802 aaKnown RBP18.14■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 41.3 ms