RNA–Protein interactions for RNA: ENST00000546298.5

YBX3-218, Transcript of Y-box binding protein 3, humanhuman

TSL 4

Gene YBX3, Length 564 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-218ENST00000546298 CWF19L2Q2TBE0 894 aaKnown RBP11.94□□□□□ -0.5
YBX3-218ENST00000546298 DEFB115Q30KQ5 88 aa11.94□□□□□ -0.5
YBX3-218ENST00000546298 UBE3BQ7Z3V4 1068 aa11.94□□□□□ -0.5
YBX3-218ENST00000546298 LINS1Q8NG48 757 aa11.94□□□□□ -0.5
YBX3-218ENST00000546298 TTLL11Q8NHH1 800 aa11.94□□□□□ -0.5
YBX3-218ENST00000546298 ABT1Q9ULW3 272 aaKnown RBP11.94□□□□□ -0.5
YBX3-218ENST00000546298 SCN4AP35499 1836 aa11.94□□□□□ -0.5
YBX3-218ENST00000546298 CACNA1SQ13698 1873 aa11.93□□□□□ -0.5
YBX3-218ENST00000546298 XDHP47989 1333 aa11.93□□□□□ -0.5
YBX3-218ENST00000546298 PSMD14O00487 310 aa11.93□□□□□ -0.5
YBX3-218ENST00000546298 IGHMBP2P38935 993 aaKnown RBP11.93□□□□□ -0.5
YBX3-218ENST00000546298 DOK7Q18PE1 504 aa11.93□□□□□ -0.5
YBX3-218ENST00000546298 PLA2G12BQ9BX93 195 aa11.93□□□□□ -0.5
YBX3-218ENST00000546298 BSDC1Q9NW68 430 aaPredicted RBP11.93□□□□□ -0.5
YBX3-218ENST00000546298 PGAP2Q9UHJ9 254 aa11.93□□□□□ -0.5
YBX3-218ENST00000546298 RASSF10A6NK89 507 aa11.92□□□□□ -0.5
YBX3-218ENST00000546298 CDC37L1Q7L3B6 337 aa11.92□□□□□ -0.5
YBX3-218ENST00000546298 MICALL2Q8IY33 904 aa11.92□□□□□ -0.5
YBX3-218ENST00000546298 GREM2Q9H772 168 aa11.92□□□□□ -0.5
YBX3-218ENST00000546298 RTL9Q8NET4 1388 aa11.92□□□□□ -0.5
YBX3-218ENST00000546298 VIL1P09327 827 aaKnown RBP11.91□□□□□ -0.5
YBX3-218ENST00000546298 ECE1P42892 770 aa11.91□□□□□ -0.5
YBX3-218ENST00000546298 VEGFBP49765 207 aa11.91□□□□□ -0.5
YBX3-218ENST00000546298 PODNQ7Z5L7 613 aa11.91□□□□□ -0.5
YBX3-218ENST00000546298 AIDAQ96BJ3 306 aa11.91□□□□□ -0.5
YBX3-218ENST00000546298 SPINK5Q9NQ38 1064 aaPredicted RBP11.91□□□□□ -0.5
YBX3-218ENST00000546298 MINPP1Q9UNW1 487 aa11.91□□□□□ -0.5
YBX3-218ENST00000546298 ZBTB12Q9Y330 459 aaPredicted RBP11.91□□□□□ -0.5
YBX3-218ENST00000546298 ANKRD36CQ5JPF3 1778 aa11.91□□□□□ -0.5
YBX3-218ENST00000546298 TRAF5O00463 557 aa11.9□□□□□ -0.5
YBX3-218ENST00000546298 HIRAP54198 1017 aaPredicted RBP11.9□□□□□ -0.5
YBX3-218ENST00000546298 AGBL3Q8NEM8 1001 aa11.9□□□□□ -0.5
YBX3-218ENST00000546298 TRPM4Q8TD43 1214 aa11.9□□□□□ -0.5
YBX3-218ENST00000546298 GPR101Q96P66 508 aaPredicted RBP11.9□□□□□ -0.5
YBX3-218ENST00000546298 MPHOSPH8Q99549 860 aa11.9□□□□□ -0.5
YBX3-218ENST00000546298 ANKRD2Q9GZV1 360 aa11.9□□□□□ -0.5
YBX3-218ENST00000546298 LEMD3Q9Y2U8 911 aa11.9□□□□□ -0.5
YBX3-218ENST00000546298 CELF2O95319 508 aaKnown RBP11.89□□□□□ -0.51
YBX3-218ENST00000546298 CSF1RP07333 972 aa11.89□□□□□ -0.51
YBX3-218ENST00000546298 ITGA6P23229 1130 aa11.89□□□□□ -0.51
YBX3-218ENST00000546298 CASP7P55210 303 aa11.89□□□□□ -0.51
YBX3-218ENST00000546298 BEND3Q5T5X7 828 aa11.89□□□□□ -0.51
YBX3-218ENST00000546298 RBM26Q5T8P6 1007 aaKnown RBP11.89□□□□□ -0.51
YBX3-218ENST00000546298 COL13A1Q5TAT6 717 aaPredicted RBP11.89□□□□□ -0.51
YBX3-218ENST00000546298 PAXIP1Q6ZW49 1069 aaPredicted RBP11.89□□□□□ -0.51
YBX3-218ENST00000546298 SAMD7Q7Z3H4 446 aa11.89□□□□□ -0.51
YBX3-218ENST00000546298 GLIS2Q9BZE0 524 aaPredicted RBP11.89□□□□□ -0.51
YBX3-218ENST00000546298 KCNQ5Q9NR82 932 aa11.89□□□□□ -0.51
YBX3-218ENST00000546298 WDR33Q9C0J8 1336 aaKnown RBP11.88□□□□□ -0.51
YBX3-218ENST00000546298 ANKRD18BA2A2Z9 1011 aa11.88□□□□□ -0.51
YBX3-218ENST00000546298 USP17L3A6NCW0 530 aa11.88□□□□□ -0.51
YBX3-218ENST00000546298 USP17L4A6NCW7 530 aa11.88□□□□□ -0.51
YBX3-218ENST00000546298 F6X3S4 739 aa11.88□□□□□ -0.51
YBX3-218ENST00000546298 ALDH1L1O75891 902 aa11.88□□□□□ -0.51
YBX3-218ENST00000546298 CCT4P50991 539 aaKnown RBP11.88□□□□□ -0.51
YBX3-218ENST00000546298 MAP2K1Q02750 393 aaPredicted RBP11.88□□□□□ -0.51
YBX3-218ENST00000546298 FMR1Q06787 632 aaKnown RBP eCLIP11.88□□□□□ -0.51
YBX3-218ENST00000546298 TBC1D10BQ4KMP7 808 aaPredicted RBP11.88□□□□□ -0.51
YBX3-218ENST00000546298 CST9Q5W186 159 aa11.88□□□□□ -0.51
YBX3-218ENST00000546298 RSBN1LQ6PCB5 846 aaPredicted RBP11.88□□□□□ -0.51
YBX3-218ENST00000546298 USP17L1Q7RTZ2 530 aa11.88□□□□□ -0.51
YBX3-218ENST00000546298 DCPSQ96C86 337 aaKnown RBP11.88□□□□□ -0.51
YBX3-218ENST00000546298 TLL2Q9Y6L7 1015 aa11.88□□□□□ -0.51
YBX3-218ENST00000546298 DUOX1Q9NRD9 1551 aa11.88□□□□□ -0.51
YBX3-218ENST00000546298 SHTN1A0MZ66 631 aa11.87□□□□□ -0.51
YBX3-218ENST00000546298 E9PSI1 815 aa11.87□□□□□ -0.51
YBX3-218ENST00000546298 KCNJ4P48050 445 aa11.87□□□□□ -0.51
YBX3-218ENST00000546298 CTCFP49711 727 aaPredicted RBP11.87□□□□□ -0.51
YBX3-218ENST00000546298 IFIT5Q13325 482 aaKnown RBP11.87□□□□□ -0.51
YBX3-218ENST00000546298 KIF4BQ2VIQ3 1234 aa11.87□□□□□ -0.51
YBX3-218ENST00000546298 FAM161AQ3B820 660 aa11.87□□□□□ -0.51
YBX3-218ENST00000546298 KRT26Q7Z3Y9 468 aa11.87□□□□□ -0.51
YBX3-218ENST00000546298 USP48Q86UV5 1035 aa11.87□□□□□ -0.51
YBX3-218ENST00000546298 TNS4Q8IZW8 715 aa11.87□□□□□ -0.51
YBX3-218ENST00000546298 CAPNS2Q96L46 248 aa11.87□□□□□ -0.51
YBX3-218ENST00000546298 SRCIN1Q9C0H9 1055 aa11.87□□□□□ -0.51
YBX3-218ENST00000546298 COA1Q9GZY4 146 aa11.87□□□□□ -0.51
YBX3-218ENST00000546298 WBP1LQ9NX94 342 aa11.87□□□□□ -0.51
YBX3-218ENST00000546298 C9orf78Q9NZ63 289 aaPredicted RBP11.87□□□□□ -0.51
YBX3-218ENST00000546298 CHMP3Q9Y3E7 222 aa11.87□□□□□ -0.51
YBX3-218ENST00000546298 ADAMTSL1Q8N6G6 1762 aa11.87□□□□□ -0.51
YBX3-218ENST00000546298 ZNF521Q96K83 1311 aa11.86□□□□□ -0.51
YBX3-218ENST00000546298 GRM8O00222 908 aa11.86□□□□□ -0.51
YBX3-218ENST00000546298 USP17L8P0C7I0 530 aa11.86□□□□□ -0.51
YBX3-218ENST00000546298 SULF1Q8IWU6 871 aa11.86□□□□□ -0.51
YBX3-218ENST00000546298 HHIPL1Q96JK4 782 aa11.86□□□□□ -0.51
YBX3-218ENST00000546298 BEGAINQ9BUH8 593 aa11.86□□□□□ -0.51
YBX3-218ENST00000546298 ZNF408Q9H9D4 720 aa11.86□□□□□ -0.51
YBX3-218ENST00000546298 MED23Q9ULK4 1368 aa11.86□□□□□ -0.51
YBX3-218ENST00000546298 DDX60Q8IY21 1712 aaKnown RBP11.86□□□□□ -0.51
YBX3-218ENST00000546298 ZNF804BA4D1E1 1349 aa11.86□□□□□ -0.51
YBX3-218ENST00000546298 FOXN1O15353 648 aa11.85□□□□□ -0.51
YBX3-218ENST00000546298 MAP2K2P36507 400 aa11.85□□□□□ -0.51
YBX3-218ENST00000546298 MMP14P50281 582 aa11.85□□□□□ -0.51
YBX3-218ENST00000546298 ZNF280AP59817 542 aaPredicted RBP11.85□□□□□ -0.51
YBX3-218ENST00000546298 CCDC57Q2TAC2 916 aa11.85□□□□□ -0.51
YBX3-218ENST00000546298 TAF7LQ5H9L4 462 aa11.85□□□□□ -0.51
YBX3-218ENST00000546298 STRIP1Q5VSL9 837 aa11.85□□□□□ -0.51
YBX3-218ENST00000546298 SLC4A10Q6U841 1118 aa11.85□□□□□ -0.51
YBX3-218ENST00000546298 SAPCD2Q86UD0 394 aa11.85□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms