RNA–Protein interactions for RNA: ENST00000542641.5

YBX3-213, Transcript of Y-box binding protein 3, humanhuman

TSL 4

Gene YBX3, Length 669 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-213ENST00000542641 TMX4Q9H1E5 349 aaPredicted RBP14.41□□□□□ -0.1
YBX3-213ENST00000542641 COPRSQ9NQ92 184 aa14.41□□□□□ -0.1
YBX3-213ENST00000542641 CNNM1Q9NRU3 951 aa14.41□□□□□ -0.1
YBX3-213ENST00000542641 BSDC1Q9NW68 430 aaPredicted RBP14.41□□□□□ -0.1
YBX3-213ENST00000542641 PA2G4Q9UQ80 394 aaKnown RBP14.41□□□□□ -0.1
YBX3-213ENST00000542641 BCS1LQ9Y276 419 aa14.41□□□□□ -0.1
YBX3-213ENST00000542641 COL11A2P13942 1736 aaPredicted RBP14.41□□□□□ -0.1
YBX3-213ENST00000542641 SIL1Q9H173 461 aa14.4□□□□□ -0.1
YBX3-213ENST00000542641 SSUH2Q9Y2M2 353 aa14.4□□□□□ -0.1
YBX3-213ENST00000542641 ATP6V0A2Q9Y487 856 aa14.4□□□□□ -0.1
YBX3-213ENST00000542641 KIAA1551Q9HCM1 1747 aa14.39□□□□□ -0.11
YBX3-213ENST00000542641 C21orf2O43822 256 aa14.39□□□□□ -0.11
YBX3-213ENST00000542641 SURF6O75683 361 aaKnown RBP14.39□□□□□ -0.11
YBX3-213ENST00000542641 G3BP1Q13283 466 aaKnown RBP eCLIP14.39□□□□□ -0.11
YBX3-213ENST00000542641 SP8Q8IXZ3 490 aa14.39□□□□□ -0.11
YBX3-213ENST00000542641 PUS3Q9BZE2 481 aaKnown RBP14.39□□□□□ -0.11
YBX3-213ENST00000542641 EYA2O00167 538 aa14.38□□□□□ -0.11
YBX3-213ENST00000542641 OS9Q13438 667 aaPredicted RBP14.38□□□□□ -0.11
YBX3-213ENST00000542641 LRRC24Q50LG9 513 aa14.38□□□□□ -0.11
YBX3-213ENST00000542641 PELP1Q8IZL8 1130 aaKnown RBP14.38□□□□□ -0.11
YBX3-213ENST00000542641 C7orf43Q8WVR3 580 aa14.38□□□□□ -0.11
YBX3-213ENST00000542641 RWDD1Q9H446 243 aaPredicted RBP14.38□□□□□ -0.11
YBX3-213ENST00000542641 FBXO3Q9UK99 471 aa14.38□□□□□ -0.11
YBX3-213ENST00000542641 MINPP1Q9UNW1 487 aa14.38□□□□□ -0.11
YBX3-213ENST00000542641 RIPOR2Q9Y4F9 1068 aa14.38□□□□□ -0.11
YBX3-213ENST00000542641 COL4A1P02462 1669 aa14.37□□□□□ -0.11
YBX3-213ENST00000542641 CIAO1O76071 339 aa14.37□□□□□ -0.11
YBX3-213ENST00000542641 IL15P40933 162 aaPredicted RBP14.37□□□□□ -0.11
YBX3-213ENST00000542641 HDAC1Q13547 482 aaPredicted RBP14.37□□□□□ -0.11
YBX3-213ENST00000542641 ERICH6BQ5W0A0 696 aa14.37□□□□□ -0.11
YBX3-213ENST00000542641 CC2D2BQ6DHV5 1058 aa14.37□□□□□ -0.11
YBX3-213ENST00000542641 OLFM4Q6UX06 510 aa14.37□□□□□ -0.11
YBX3-213ENST00000542641 NOP58Q9Y2X3 529 aaKnown RBP14.37□□□□□ -0.11
YBX3-213ENST00000542641 TAF1P21675 1872 aa14.36□□□□□ -0.11
YBX3-213ENST00000542641 CHRNDQ07001 517 aa14.36□□□□□ -0.11
YBX3-213ENST00000542641 HSP90AB4PQ58FF6 505 aa14.36□□□□□ -0.11
YBX3-213ENST00000542641 METTL24Q5JXM2 366 aa14.36□□□□□ -0.11
YBX3-213ENST00000542641 SOGA3Q5TF21 947 aa14.36□□□□□ -0.11
YBX3-213ENST00000542641 ATG9AQ7Z3C6 839 aa14.36□□□□□ -0.11
YBX3-213ENST00000542641 SLC51AQ86UW1 340 aa14.36□□□□□ -0.11
YBX3-213ENST00000542641 ANKRD2Q9GZV1 360 aa14.36□□□□□ -0.11
YBX3-213ENST00000542641 ANKIB1Q9P2G1 1089 aa14.36□□□□□ -0.11
YBX3-213ENST00000542641 NSFL1CQ9UNZ2 370 aaKnown RBP14.36□□□□□ -0.11
YBX3-213ENST00000542641 EXOC6BQ9Y2D4 811 aa14.36□□□□□ -0.11
YBX3-213ENST00000542641 DLEC1Q9Y238 1755 aa14.36□□□□□ -0.11
YBX3-213ENST00000542641 MROH5Q6ZUA9 1318 aa14.36□□□□□ -0.11
YBX3-213ENST00000542641 IGHDP01880 384 aa14.35□□□□□ -0.11
YBX3-213ENST00000542641 GPSM2P81274 684 aa14.35□□□□□ -0.11
YBX3-213ENST00000542641 GPR162Q16538 588 aa14.35□□□□□ -0.11
YBX3-213ENST00000542641 GRIPAP1Q4V328 841 aa14.35□□□□□ -0.11
YBX3-213ENST00000542641 CCDC93Q567U6 631 aa14.35□□□□□ -0.11
YBX3-213ENST00000542641 HELBQ8NG08 1087 aaPredicted RBP14.35□□□□□ -0.11
YBX3-213ENST00000542641 DCTPP1Q9H773 170 aa14.35□□□□□ -0.11
YBX3-213ENST00000542641 CEP126Q9P2H0 1117 aa14.35□□□□□ -0.11
YBX3-213ENST00000542641 SLX4Q8IY92 1834 aa14.35□□□□□ -0.11
YBX3-213ENST00000542641 GOLGB1Q14789 3259 aaKnown RBP14.35□□□□□ -0.11
YBX3-213ENST00000542641 APBB1O00213 710 aa14.34□□□□□ -0.11
YBX3-213ENST00000542641 TAF5LO75529 589 aa14.34□□□□□ -0.11
YBX3-213ENST00000542641 DPP8Q6V1X1 898 aaPredicted RBP14.34□□□□□ -0.11
YBX3-213ENST00000542641 ERC1Q8IUD2 1116 aa14.34□□□□□ -0.11
YBX3-213ENST00000542641 RTKN2Q8IZC4 609 aa14.34□□□□□ -0.11
YBX3-213ENST00000542641 MPNDQ8N594 471 aa14.34□□□□□ -0.11
YBX3-213ENST00000542641 XDHP47989 1333 aa14.34□□□□□ -0.11
YBX3-213ENST00000542641 RAB11FIP3O75154 756 aa14.33□□□□□ -0.12
YBX3-213ENST00000542641 SASH1O94885 1247 aa14.33□□□□□ -0.12
YBX3-213ENST00000542641 PDE8BO95263 885 aa14.33□□□□□ -0.12
YBX3-213ENST00000542641 YBX3P16989 372 aaKnown RBP eCLIP14.33□□□□□ -0.126e-7■■□□□ 13
YBX3-213ENST00000542641 KCNJ4P48050 445 aa14.33□□□□□ -0.12
YBX3-213ENST00000542641 TFCP2Q12800 502 aa14.33□□□□□ -0.12
YBX3-213ENST00000542641 PODXL2Q9NZ53 605 aa14.33□□□□□ -0.12
YBX3-213ENST00000542641 BRCA1P38398 1863 aaKnown RBP14.32□□□□□ -0.12
YBX3-213ENST00000542641 C6orf229H3BNL8 230 aa14.32□□□□□ -0.12
YBX3-213ENST00000542641 ATP2B4P23634 1241 aa14.32□□□□□ -0.12
YBX3-213ENST00000542641 ARHGAP27Q6ZUM4 889 aa14.32□□□□□ -0.12
YBX3-213ENST00000542641 GCC1Q96CN9 775 aa14.32□□□□□ -0.12
YBX3-213ENST00000542641 CCDC136Q96JN2 1154 aa14.32□□□□□ -0.12
YBX3-213ENST00000542641 PPP4R2Q9NY27 417 aa14.32□□□□□ -0.12
YBX3-213ENST00000542641 GGA1Q9UJY5 639 aa14.32□□□□□ -0.12
YBX3-213ENST00000542641 LEMD3Q9Y2U8 911 aa14.32□□□□□ -0.12
YBX3-213ENST00000542641 UFL1O94874 794 aa14.31□□□□□ -0.12
YBX3-213ENST00000542641 VGLL2Q8N8G2 317 aa14.31□□□□□ -0.12
YBX3-213ENST00000542641 TBC1D16Q8TBP0 767 aa14.31□□□□□ -0.12
YBX3-213ENST00000542641 RHPN1Q8TCX5 695 aa14.31□□□□□ -0.12
YBX3-213ENST00000542641 KIF1BPQ96EK5 621 aa14.31□□□□□ -0.12
YBX3-213ENST00000542641 POLLQ9UGP5 575 aa14.31□□□□□ -0.12
YBX3-213ENST00000542641 ZNF804BA4D1E1 1349 aa14.31□□□□□ -0.12
YBX3-213ENST00000542641 CACNA1SQ13698 1873 aa14.31□□□□□ -0.12
YBX3-213ENST00000542641 SPEF2Q9C093 1822 aa14.3□□□□□ -0.12
YBX3-213ENST00000542641 WTIPA6NIX2 430 aaPredicted RBP14.3□□□□□ -0.12
YBX3-213ENST00000542641 SNAP23O00161 211 aa14.3□□□□□ -0.12
YBX3-213ENST00000542641 GRIN3BO60391 1043 aa14.3□□□□□ -0.12
YBX3-213ENST00000542641 UBE4AQ14139 1066 aa14.3□□□□□ -0.12
YBX3-213ENST00000542641 PUM3Q15397 648 aaKnown RBP14.3□□□□□ -0.12
YBX3-213ENST00000542641 SUPT20HQ8NEM7 779 aa14.3□□□□□ -0.12
YBX3-213ENST00000542641 PSMD1Q99460 953 aa14.3□□□□□ -0.12
YBX3-213ENST00000542641 LRRCC1Q9C099 1032 aa14.3□□□□□ -0.12
YBX3-213ENST00000542641 BCL11AQ9H165 835 aa14.3□□□□□ -0.12
YBX3-213ENST00000542641 TAOK3Q9H2K8 898 aa14.3□□□□□ -0.12
YBX3-213ENST00000542641 AKAP2Q9Y2D5 859 aa14.3□□□□□ -0.12
YBX3-213ENST00000542641 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP14.3□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 83.6 ms