RNA–Protein interactions for RNA: ENST00000542407.5

PDLIM5-221, Transcript of PDZ and LIM domain 5, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene PDLIM5, Length 2,979 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-221ENST00000542407 SYCE3A1L190 88 aa9.51□□□□□ -0.89
PDLIM5-221ENST00000542407 SURF6O75683 361 aaKnown RBP9.51□□□□□ -0.89
PDLIM5-221ENST00000542407 CASP7P55210 303 aa9.51□□□□□ -0.89
PDLIM5-221ENST00000542407 ZNF771Q7L3S4 317 aaPredicted RBP9.51□□□□□ -0.89
PDLIM5-221ENST00000542407 ZNF710Q8N1W2 664 aa9.51□□□□□ -0.89
PDLIM5-221ENST00000542407 MYRIPQ8NFW9 859 aa9.51□□□□□ -0.89
PDLIM5-221ENST00000542407 PDLIM2Q96JY6 352 aa9.51□□□□□ -0.89
PDLIM5-221ENST00000542407 EFCC1Q9HA90 598 aa9.51□□□□□ -0.89
PDLIM5-221ENST00000542407 TMOD3Q9NYL9 352 aa9.51□□□□□ -0.89
PDLIM5-221ENST00000542407 MYCBPQ99417 103 aaPredicted RBP9.5□□□□□ -0.89
PDLIM5-221ENST00000542407 ATG3Q9NT62 314 aa9.5□□□□□ -0.89
PDLIM5-221ENST00000542407 USP42Q9H9J4 1324 aaKnown RBP9.5□□□□□ -0.89
PDLIM5-221ENST00000542407 PTCD1O75127 700 aaKnown RBP9.5□□□□□ -0.89
PDLIM5-221ENST00000542407 A1BGP04217 495 aa9.5□□□□□ -0.89
PDLIM5-221ENST00000542407 CCDC172P0C7W6 258 aa9.5□□□□□ -0.89
PDLIM5-221ENST00000542407 CAPN2P17655 700 aa9.5□□□□□ -0.89
PDLIM5-221ENST00000542407 MCM5P33992 734 aa9.5□□□□□ -0.89
PDLIM5-221ENST00000542407 ZKSCAN8Q15776 578 aaPredicted RBP9.5□□□□□ -0.89
PDLIM5-221ENST00000542407 EPHA10Q5JZY3 1008 aa9.5□□□□□ -0.89
PDLIM5-221ENST00000542407 IL1RAPL2Q9NP60 686 aa9.5□□□□□ -0.89
PDLIM5-221ENST00000542407 ASAP1Q9ULH1 1129 aa9.5□□□□□ -0.89
PDLIM5-221ENST00000542407 TTLL7Q6ZT98 887 aa9.49□□□□□ -0.89
PDLIM5-221ENST00000542407 C17orf53Q8N3J3 647 aaPredicted RBP9.49□□□□□ -0.89
PDLIM5-221ENST00000542407 PI4K2BQ8TCG2 481 aa9.49□□□□□ -0.89
PDLIM5-221ENST00000542407 KIF1BPQ96EK5 621 aa9.49□□□□□ -0.89
PDLIM5-221ENST00000542407 CICQ96RK0 1608 aaPredicted RBP9.49□□□□□ -0.89
PDLIM5-221ENST00000542407 POLD1P28340 1107 aa9.49□□□□□ -0.89
PDLIM5-221ENST00000542407 NEXNQ0ZGT2 675 aa9.49□□□□□ -0.89
PDLIM5-221ENST00000542407 SPATA31A5Q5VU36 1347 aa9.49□□□□□ -0.89
PDLIM5-221ENST00000542407 SPATA31A7Q8IWB4 1347 aa9.49□□□□□ -0.89
PDLIM5-221ENST00000542407 SEMA3EO15041 775 aa9.48□□□□□ -0.89
PDLIM5-221ENST00000542407 ADAMTS2O95450 1211 aa9.48□□□□□ -0.89
PDLIM5-221ENST00000542407 RABL6Q3YEC7 729 aaPredicted RBP9.48□□□□□ -0.89
PDLIM5-221ENST00000542407 CHAMP1Q96JM3 812 aa9.48□□□□□ -0.89
PDLIM5-221ENST00000542407 SLC4A9Q96Q91 983 aa9.48□□□□□ -0.89
PDLIM5-221ENST00000542407 PA2G4Q9UQ80 394 aaKnown RBP9.48□□□□□ -0.89
PDLIM5-221ENST00000542407 THRAP3Q9Y2W1 955 aaKnown RBP9.48□□□□□ -0.89
PDLIM5-221ENST00000542407 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP9.48□□□□□ -0.892e-8■■■■□ 25.8
PDLIM5-221ENST00000542407 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP9.48□□□□□ -0.89
PDLIM5-221ENST00000542407 TOM1O60784 492 aa9.48□□□□□ -0.89
PDLIM5-221ENST00000542407 TSPYL1Q9H0U9 437 aa9.48□□□□□ -0.89
PDLIM5-221ENST00000542407 BSDC1Q9NW68 430 aaPredicted RBP9.48□□□□□ -0.89
PDLIM5-221ENST00000542407 RFX5P48382 616 aaPredicted RBP9.48□□□□□ -0.89
PDLIM5-221ENST00000542407 PKP1Q13835 747 aa9.48□□□□□ -0.89
PDLIM5-221ENST00000542407 NUTM1Q86Y26 1132 aa9.48□□□□□ -0.89
PDLIM5-221ENST00000542407 UNC5CLQ8IV45 518 aa9.48□□□□□ -0.89
PDLIM5-221ENST00000542407 USP26Q9BXU7 913 aa9.48□□□□□ -0.89
PDLIM5-221ENST00000542407 LMBRD1Q9NUN5 540 aa9.48□□□□□ -0.89
PDLIM5-221ENST00000542407 KIF3AQ9Y496 699 aa9.48□□□□□ -0.89
PDLIM5-221ENST00000542407 RREB1Q92766 1687 aa9.47□□□□□ -0.89
PDLIM5-221ENST00000542407 EXOC5O00471 708 aa9.47□□□□□ -0.89
PDLIM5-221ENST00000542407 PIP4K2BP78356 416 aa9.47□□□□□ -0.89
PDLIM5-221ENST00000542407 PDCL2Q8N4E4 241 aa9.47□□□□□ -0.89
PDLIM5-221ENST00000542407 CDCA7Q9BWT1 371 aaPredicted RBP9.47□□□□□ -0.89
PDLIM5-221ENST00000542407 MRVI1Q9Y6F6 885 aa9.47□□□□□ -0.89
PDLIM5-221ENST00000542407 ATP5J2-PTCD1G3V325 749 aa9.47□□□□□ -0.89
PDLIM5-221ENST00000542407 SASH1O94885 1247 aa9.47□□□□□ -0.89
PDLIM5-221ENST00000542407 U2AF2P26368 475 aaKnown RBP eCLIP9.47□□□□□ -0.892e-9■■■■■ 29.5
PDLIM5-221ENST00000542407 DNAJC10Q8IXB1 793 aa9.47□□□□□ -0.89
PDLIM5-221ENST00000542407 CALR3Q96L12 384 aaKnown RBP9.47□□□□□ -0.89
PDLIM5-221ENST00000542407 H7C1W4 665 aa9.46□□□□□ -0.89
PDLIM5-221ENST00000542407 BCL9LQ86UU0 1499 aa9.46□□□□□ -0.89
PDLIM5-221ENST00000542407 HMGN5P82970 282 aaKnown RBP9.46□□□□□ -0.9
PDLIM5-221ENST00000542407 BARGINQ6ZT62 677 aa9.46□□□□□ -0.9
PDLIM5-221ENST00000542407 GPT2Q8TD30 523 aa9.46□□□□□ -0.9
PDLIM5-221ENST00000542407 FOXO4P98177 505 aa9.45□□□□□ -0.9
PDLIM5-221ENST00000542407 MTA1Q13330 715 aa9.45□□□□□ -0.9
PDLIM5-221ENST00000542407 UBE3BQ7Z3V4 1068 aa9.45□□□□□ -0.9
PDLIM5-221ENST00000542407 ERC1Q8IUD2 1116 aa9.45□□□□□ -0.9
PDLIM5-221ENST00000542407 NCAPGQ9BPX3 1015 aa9.45□□□□□ -0.9
PDLIM5-221ENST00000542407 BCL2L12Q9HB09 334 aa9.45□□□□□ -0.9
PDLIM5-221ENST00000542407 CHMLP26374 656 aa9.45□□□□□ -0.9
PDLIM5-221ENST00000542407 NOLC1Q14978 699 aaKnown RBP eCLIP9.45□□□□□ -0.9
PDLIM5-221ENST00000542407 SPTY2D1Q68D10 685 aaPredicted RBP9.45□□□□□ -0.9
PDLIM5-221ENST00000542407 LRSAM1Q6UWE0 723 aa9.45□□□□□ -0.9
PDLIM5-221ENST00000542407 MARCH10Q8NA82 808 aaPredicted RBP9.45□□□□□ -0.9
PDLIM5-221ENST00000542407 PRIMPOLQ96LW4 560 aa9.45□□□□□ -0.9
PDLIM5-221ENST00000542407 TEX13AQ9BXU3 409 aaPredicted RBP9.45□□□□□ -0.9
PDLIM5-221ENST00000542407 RBM28Q9NW13 759 aaKnown RBP9.45□□□□□ -0.9
PDLIM5-221ENST00000542407 TMEM63CQ9P1W3 806 aa9.45□□□□□ -0.9
PDLIM5-221ENST00000542407 AK9Q5TCS8 1911 aa9.45□□□□□ -0.9
PDLIM5-221ENST00000542407 TTC41PQ6P2S7 1318 aa9.45□□□□□ -0.9
PDLIM5-221ENST00000542407 ANKRD36CQ5JPF3 1778 aa9.45□□□□□ -0.9
PDLIM5-221ENST00000542407 A0A087WZG4 1122 aa9.45□□□□□ -0.9
PDLIM5-221ENST00000542407 NUTM2BA6NNL0 878 aaPredicted RBP9.45□□□□□ -0.9
PDLIM5-221ENST00000542407 NUTM2EB1AL46 878 aaPredicted RBP9.45□□□□□ -0.9
PDLIM5-221ENST00000542407 CYP19A1P11511 503 aaPredicted RBP9.45□□□□□ -0.9
PDLIM5-221ENST00000542407 NUCB2P80303 420 aa9.45□□□□□ -0.9
PDLIM5-221ENST00000542407 NUTM2AQ8IVF1 878 aaPredicted RBP9.45□□□□□ -0.9
PDLIM5-221ENST00000542407 KLHDC4Q8TBB5 520 aa9.45□□□□□ -0.9
PDLIM5-221ENST00000542407 ISCA1Q9BUE6 129 aa9.45□□□□□ -0.9
PDLIM5-221ENST00000542407 ZBTB3Q9H5J0 574 aa9.45□□□□□ -0.9
PDLIM5-221ENST00000542407 TTC12Q9H892 705 aaPredicted RBP9.45□□□□□ -0.9
PDLIM5-221ENST00000542407 COPRSQ9NQ92 184 aa9.45□□□□□ -0.9
PDLIM5-221ENST00000542407 TULP2O00295 520 aa9.44□□□□□ -0.9
PDLIM5-221ENST00000542407 ERC2O15083 957 aa9.44□□□□□ -0.9
PDLIM5-221ENST00000542407 PTPN12Q05209 780 aaKnown RBP9.44□□□□□ -0.9
PDLIM5-221ENST00000542407 ANKRD23Q86SG2 305 aa9.44□□□□□ -0.9
PDLIM5-221ENST00000542407 ESYT1Q9BSJ8 1104 aa9.44□□□□□ -0.9
PDLIM5-221ENST00000542407 IL25Q9H293 177 aa9.44□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 56.2 ms