RNA–Protein interactions for RNA: ENST00000532540.5

TGFBR3-209, Transcript of transforming growth factor beta receptor 3, humanhuman

TSL 1 (best)

Gene TGFBR3, Length 3,913 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TGFBR3-209ENST00000532540 ERC2O15083 957 aa7.9□□□□□ -1.14
TGFBR3-209ENST00000532540 SRGAP3O43295 1099 aa7.9□□□□□ -1.14
TGFBR3-209ENST00000532540 GIMAP6Q6P9H5 292 aa7.9□□□□□ -1.14
TGFBR3-209ENST00000532540 VPS37DQ86XT2 251 aa7.9□□□□□ -1.14
TGFBR3-209ENST00000532540 CENPHQ9H3R5 247 aa7.9□□□□□ -1.14
TGFBR3-209ENST00000532540 LTBP4Q8N2S1 1624 aa7.9□□□□□ -1.15
TGFBR3-209ENST00000532540 MAP4K4O95819 1239 aaPredicted RBP7.9□□□□□ -1.15
TGFBR3-209ENST00000532540 EIF4A1P60842 406 aaKnown RBP7.9□□□□□ -1.15
TGFBR3-209ENST00000532540 UBE2HP62256 183 aa7.9□□□□□ -1.15
TGFBR3-209ENST00000532540 NCBP1Q09161 790 aaKnown RBP7.9□□□□□ -1.15
TGFBR3-209ENST00000532540 RPAINQ86UA6 219 aa7.9□□□□□ -1.15
TGFBR3-209ENST00000532540 CNNM1Q9NRU3 951 aa7.9□□□□□ -1.15
TGFBR3-209ENST00000532540 MORC2Q9Y6X9 1032 aaPredicted RBP7.9□□□□□ -1.15
TGFBR3-209ENST00000532540 SLFN14P0C7P3 912 aa7.89□□□□□ -1.15
TGFBR3-209ENST00000532540 IBSPP21815 317 aaPredicted RBP7.89□□□□□ -1.15
TGFBR3-209ENST00000532540 VPS72Q15906 364 aa7.89□□□□□ -1.15
TGFBR3-209ENST00000532540 TRAPPC3LQ5T215 181 aa7.89□□□□□ -1.15
TGFBR3-209ENST00000532540 HELBQ8NG08 1087 aaPredicted RBP7.89□□□□□ -1.15
TGFBR3-209ENST00000532540 MEIS3Q99687 375 aa7.89□□□□□ -1.15
TGFBR3-209ENST00000532540 CDCA7Q9BWT1 371 aaPredicted RBP7.89□□□□□ -1.15
TGFBR3-209ENST00000532540 IQSEC3Q9UPP2 1182 aaPredicted RBP7.89□□□□□ -1.15
TGFBR3-209ENST00000532540 CHL1O00533 1208 aa7.89□□□□□ -1.15
TGFBR3-209ENST00000532540 DHX16O60231 1041 aaKnown RBP7.89□□□□□ -1.15
TGFBR3-209ENST00000532540 SYT10Q6XYQ8 523 aa7.89□□□□□ -1.15
TGFBR3-209ENST00000532540 CCDC73Q6ZRK6 1079 aa7.89□□□□□ -1.15
TGFBR3-209ENST00000532540 KLHDC4Q8TBB5 520 aa7.89□□□□□ -1.15
TGFBR3-209ENST00000532540 KIAA1524Q8TCG1 905 aa7.89□□□□□ -1.15
TGFBR3-209ENST00000532540 FAM200AQ8TCP9 573 aa7.89□□□□□ -1.15
TGFBR3-209ENST00000532540 SMARCC1Q92922 1105 aaPredicted RBP7.89□□□□□ -1.15
TGFBR3-209ENST00000532540 JAG2Q9Y219 1238 aa7.89□□□□□ -1.15
TGFBR3-209ENST00000532540 RRP15Q9Y3B9 282 aaKnown RBP7.89□□□□□ -1.15
TGFBR3-209ENST00000532540 CD163L1Q9NR16 1453 aa7.89□□□□□ -1.15
TGFBR3-209ENST00000532540 NPC1L1Q9UHC9 1359 aa7.89□□□□□ -1.15
TGFBR3-209ENST00000532540 SMARCA5O60264 1052 aaPredicted RBP7.89□□□□□ -1.15
TGFBR3-209ENST00000532540 SKILP12757 684 aa7.89□□□□□ -1.15
TGFBR3-209ENST00000532540 CASTP20810 708 aaKnown RBP7.89□□□□□ -1.15
TGFBR3-209ENST00000532540 FAM177A1Q8N128 213 aaPredicted RBP7.89□□□□□ -1.15
TGFBR3-209ENST00000532540 CDC42BPGQ6DT37 1551 aa7.89□□□□□ -1.15
TGFBR3-209ENST00000532540 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP7.88□□□□□ -1.15
TGFBR3-209ENST00000532540 SHTN1A0MZ66 631 aa7.88□□□□□ -1.15
TGFBR3-209ENST00000532540 MPHOSPH10O00566 681 aaKnown RBP7.88□□□□□ -1.15
TGFBR3-209ENST00000532540 GIGYF1O75420 1035 aaPredicted RBP7.88□□□□□ -1.15
TGFBR3-209ENST00000532540 KRT85P78386 507 aa7.88□□□□□ -1.15
TGFBR3-209ENST00000532540 G3BP1Q13283 466 aaKnown RBP eCLIP7.88□□□□□ -1.157e-7■□□□□ 9.5
TGFBR3-209ENST00000532540 HDAC1Q13547 482 aaPredicted RBP7.88□□□□□ -1.15
TGFBR3-209ENST00000532540 TSHZ3Q63HK5 1081 aa7.88□□□□□ -1.15
TGFBR3-209ENST00000532540 CCDC70Q6NSX1 233 aa7.88□□□□□ -1.15
TGFBR3-209ENST00000532540 ATG3Q9NT62 314 aa7.88□□□□□ -1.15
TGFBR3-209ENST00000532540 ZNF215Q9UL58 517 aaPredicted RBP7.88□□□□□ -1.15
TGFBR3-209ENST00000532540 SPATA31A5Q5VU36 1347 aa7.88□□□□□ -1.15
TGFBR3-209ENST00000532540 SPATA31A7Q8IWB4 1347 aa7.88□□□□□ -1.15
TGFBR3-209ENST00000532540 SIPA1L2Q9P2F8 1722 aaPredicted RBP7.88□□□□□ -1.15
TGFBR3-209ENST00000532540 CT47B1P0C2W7 299 aaPredicted RBP7.88□□□□□ -1.15
TGFBR3-209ENST00000532540 CRKLP46109 303 aaKnown RBP7.88□□□□□ -1.15
TGFBR3-209ENST00000532540 R3HDM1Q15032 1099 aaKnown RBP7.88□□□□□ -1.15
TGFBR3-209ENST00000532540 E2F4Q16254 413 aa7.88□□□□□ -1.15
TGFBR3-209ENST00000532540 USP48Q86UV5 1035 aa7.88□□□□□ -1.15
TGFBR3-209ENST00000532540 GOLGA5Q8TBA6 731 aa7.88□□□□□ -1.15
TGFBR3-209ENST00000532540 RUFY1Q96T51 708 aa7.88□□□□□ -1.15
TGFBR3-209ENST00000532540 SETDB2Q96T68 719 aa7.88□□□□□ -1.15
TGFBR3-209ENST00000532540 GBP3Q9H0R5 595 aa7.88□□□□□ -1.15
TGFBR3-209ENST00000532540 STK32BQ9NY57 414 aa7.88□□□□□ -1.15
TGFBR3-209ENST00000532540 SFPQP23246 707 aaKnown RBP eCLIP7.88□□□□□ -1.152e-6■■□□□ 13.1
TGFBR3-209ENST00000532540 EZH2Q15910 746 aaKnown RBP7.88□□□□□ -1.15
TGFBR3-209ENST00000532540 NBPF14Q5TI25 921 aa7.88□□□□□ -1.15
TGFBR3-209ENST00000532540 JAKMIP3Q5VZ66 844 aa7.88□□□□□ -1.15
TGFBR3-209ENST00000532540 USPL1Q5W0Q7 1092 aa7.88□□□□□ -1.15
TGFBR3-209ENST00000532540 ZGPATQ8N5A5 531 aaKnown RBP7.88□□□□□ -1.15
TGFBR3-209ENST00000532540 GPT2Q8TD30 523 aa7.88□□□□□ -1.15
TGFBR3-209ENST00000532540 ANKRD7Q92527 254 aa7.88□□□□□ -1.15
TGFBR3-209ENST00000532540 MPHOSPH8Q99549 860 aa7.88□□□□□ -1.15
TGFBR3-209ENST00000532540 PAIP2Q9BPZ3 127 aaKnown RBP7.88□□□□□ -1.15
TGFBR3-209ENST00000532540 DLC1Q96QB1 1528 aa7.88□□□□□ -1.15
TGFBR3-209ENST00000532540 H3BQV1 296 aa7.87□□□□□ -1.15
TGFBR3-209ENST00000532540 LIG1P18858 919 aa7.87□□□□□ -1.15
TGFBR3-209ENST00000532540 PPP2R5AQ15172 486 aa7.87□□□□□ -1.15
TGFBR3-209ENST00000532540 IFFO2Q5TF58 517 aa7.87□□□□□ -1.15
TGFBR3-209ENST00000532540 STK11IPQ8N1F8 1099 aa7.87□□□□□ -1.15
TGFBR3-209ENST00000532540 SYNE4Q8N205 404 aa7.87□□□□□ -1.15
TGFBR3-209ENST00000532540 PYCARDQ9ULZ3 195 aa7.87□□□□□ -1.15
TGFBR3-209ENST00000532540 OVOS2A0A0J9YW53 1432 aa7.87□□□□□ -1.15
TGFBR3-209ENST00000532540 OVOS2Q6IE36 1432 aa7.87□□□□□ -1.15
TGFBR3-209ENST00000532540 ZNF853P0CG23 659 aa7.87□□□□□ -1.15
TGFBR3-209ENST00000532540 KCNA4P22459 653 aa7.87□□□□□ -1.15
TGFBR3-209ENST00000532540 SF3A1Q15459 793 aaKnown RBP7.87□□□□□ -1.15
TGFBR3-209ENST00000532540 CAMK4Q16566 473 aa7.87□□□□□ -1.15
TGFBR3-209ENST00000532540 CCDC57Q2TAC2 916 aa7.87□□□□□ -1.15
TGFBR3-209ENST00000532540 CCDC34Q96HJ3 373 aa7.87□□□□□ -1.15
TGFBR3-209ENST00000532540 PA2G4Q9UQ80 394 aaKnown RBP7.87□□□□□ -1.15
TGFBR3-209ENST00000532540 SSH2Q76I76 1423 aa7.87□□□□□ -1.15
TGFBR3-209ENST00000532540 KIF1CO43896 1103 aaKnown RBP7.87□□□□□ -1.15
TGFBR3-209ENST00000532540 OAS2P29728 719 aaKnown RBP7.87□□□□□ -1.15
TGFBR3-209ENST00000532540 GSDMDP57764 484 aa7.87□□□□□ -1.15
TGFBR3-209ENST00000532540 SRRTQ9BXP5 876 aaKnown RBP7.87□□□□□ -1.15
TGFBR3-209ENST00000532540 CCDC87Q9NVE4 849 aa7.87□□□□□ -1.15
TGFBR3-209ENST00000532540 HYPKQ9NX55 129 aa7.87□□□□□ -1.15
TGFBR3-209ENST00000532540 CRB1P82279 1406 aa7.86□□□□□ -1.15
TGFBR3-209ENST00000532540 USP31Q70CQ4 1352 aa7.86□□□□□ -1.15
TGFBR3-209ENST00000532540 ZNF165P49910 485 aa7.86□□□□□ -1.15
TGFBR3-209ENST00000532540 TXNRD1Q16881 649 aa7.86□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms