RNA–Protein interactions for RNA: ENST00000531873.5

CD44-234, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 584 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-234ENST00000531873 NOP53Q9NZM5 478 aaKnown RBP4.78□□□□□ -1.64
CD44-234ENST00000531873 VTI1BQ9UEU0 232 aa4.78□□□□□ -1.64
CD44-234ENST00000531873 CPNE3O75131 537 aaKnown RBP4.77□□□□□ -1.65
CD44-234ENST00000531873 TNFRSF21O75509 655 aa4.77□□□□□ -1.65
CD44-234ENST00000531873 PCSK2P16519 638 aa4.77□□□□□ -1.65
CD44-234ENST00000531873 TATP17735 454 aaPredicted RBP4.77□□□□□ -1.65
CD44-234ENST00000531873 ARSDP51689 593 aa4.77□□□□□ -1.65
CD44-234ENST00000531873 TYRO3Q06418 890 aa4.77□□□□□ -1.65
CD44-234ENST00000531873 NAALADL2Q58DX5 795 aa4.77□□□□□ -1.65
CD44-234ENST00000531873 XKR5Q6UX68 686 aa4.77□□□□□ -1.65
CD44-234ENST00000531873 PI16Q6UXB8 463 aa4.77□□□□□ -1.65
CD44-234ENST00000531873 TMEM87AQ8NBN3 555 aa4.77□□□□□ -1.65
CD44-234ENST00000531873 PIK3R5Q8WYR1 880 aa4.77□□□□□ -1.65
CD44-234ENST00000531873 METTL5Q9NRN9 209 aaKnown RBP4.77□□□□□ -1.65
CD44-234ENST00000531873 PHF24Q9UPV7 400 aa4.77□□□□□ -1.65
CD44-234ENST00000531873 RTCBQ9Y3I0 505 aaKnown RBP4.77□□□□□ -1.65
CD44-234ENST00000531873 A0A1B0GTH6 734 aa4.76□□□□□ -1.65
CD44-234ENST00000531873 RPLP1P05386 114 aaKnown RBP4.76□□□□□ -1.65
CD44-234ENST00000531873 MSX1P28360 303 aa4.76□□□□□ -1.65
CD44-234ENST00000531873 DGKGP49619 791 aa4.76□□□□□ -1.65
CD44-234ENST00000531873 UBAP2LQ14157 1087 aaKnown RBP4.76□□□□□ -1.65
CD44-234ENST00000531873 RSPO4Q2I0M5 234 aaPredicted RBP4.76□□□□□ -1.65
CD44-234ENST00000531873 LRRC69Q6ZNQ3 347 aa4.76□□□□□ -1.65
CD44-234ENST00000531873 BICDL1Q6ZP65 573 aa4.76□□□□□ -1.65
CD44-234ENST00000531873 NT5DC4Q86YG4 428 aa4.76□□□□□ -1.65
CD44-234ENST00000531873 SNX29Q8TEQ0 813 aa4.76□□□□□ -1.65
CD44-234ENST00000531873 SREK1Q8WXA9 508 aaKnown RBP4.76□□□□□ -1.65
CD44-234ENST00000531873 CRELD1Q96HD1 420 aa4.76□□□□□ -1.65
CD44-234ENST00000531873 BTBD6Q96KE9 485 aa4.76□□□□□ -1.65
CD44-234ENST00000531873 TINF2Q9BSI4 451 aa4.76□□□□□ -1.65
CD44-234ENST00000531873 GOLGA2P5Q9HBQ8 144 aa4.76□□□□□ -1.65
CD44-234ENST00000531873 ZFP64Q9NPA5 681 aa4.76□□□□□ -1.65
CD44-234ENST00000531873 TIMMDC1Q9NPL8 285 aa4.76□□□□□ -1.65
CD44-234ENST00000531873 TMEM63CQ9P1W3 806 aa4.76□□□□□ -1.65
CD44-234ENST00000531873 AK5Q9Y6K8 562 aa4.76□□□□□ -1.65
CD44-234ENST00000531873 LBRQ14739 615 aaKnown RBP4.75□□□□□ -1.65
CD44-234ENST00000531873 LARP7Q4G0J3 582 aaKnown RBP eCLIP4.75□□□□□ -1.65
CD44-234ENST00000531873 NKAPLQ5M9Q1 402 aa4.75□□□□□ -1.65
CD44-234ENST00000531873 PDE12Q6L8Q7 609 aaKnown RBP4.75□□□□□ -1.65
CD44-234ENST00000531873 ZNF438Q7Z4V0 828 aa4.75□□□□□ -1.65
CD44-234ENST00000531873 EPS8L3Q8TE67 593 aaKnown RBP4.75□□□□□ -1.65
CD44-234ENST00000531873 OSBPL7Q9BZF2 842 aa4.75□□□□□ -1.65
CD44-234ENST00000531873 CHRDQ9H2X0 955 aa4.75□□□□□ -1.65
CD44-234ENST00000531873 CRISPLD1Q9H336 500 aa4.75□□□□□ -1.65
CD44-234ENST00000531873 ANKIB1Q9P2G1 1089 aa4.75□□□□□ -1.65
CD44-234ENST00000531873 A0A1W2PNR3 127 aa4.74□□□□□ -1.65
CD44-234ENST00000531873 SCO2A0A1W2PP80 73 aa4.74□□□□□ -1.65
CD44-234ENST00000531873 UBAP1LF5GYI3 381 aa4.74□□□□□ -1.65
CD44-234ENST00000531873 EPXP11678 715 aa4.74□□□□□ -1.65
CD44-234ENST00000531873 AMPD1P23109 780 aa4.74□□□□□ -1.65
CD44-234ENST00000531873 ZNF76P36508 570 aa4.74□□□□□ -1.65
CD44-234ENST00000531873 GATA4P43694 442 aa4.74□□□□□ -1.65
CD44-234ENST00000531873 ARSJQ5FYB0 599 aaPredicted RBP4.74□□□□□ -1.65
CD44-234ENST00000531873 CMTR1Q8N1G2 835 aaKnown RBP4.74□□□□□ -1.65
CD44-234ENST00000531873 RNF34Q969K3 372 aa4.74□□□□□ -1.65
CD44-234ENST00000531873 CCDC74AQ96AQ1 378 aa4.74□□□□□ -1.65
CD44-234ENST00000531873 FRMD6Q96NE9 622 aa4.74□□□□□ -1.65
CD44-234ENST00000531873 RUBCNLQ9H714 662 aa4.74□□□□□ -1.65
CD44-234ENST00000531873 C12orf49Q9H741 205 aa4.74□□□□□ -1.65
CD44-234ENST00000531873 ELP3Q9H9T3 547 aa4.74□□□□□ -1.65
CD44-234ENST00000531873 ZFYVE28Q9HCC9 887 aa4.74□□□□□ -1.65
CD44-234ENST00000531873 NPHS2Q9NP85 383 aa4.74□□□□□ -1.65
CD44-234ENST00000531873 C2CD2LO14523 706 aa4.73□□□□□ -1.65
CD44-234ENST00000531873 EGFRP00533 1210 aa4.73□□□□□ -1.65
CD44-234ENST00000531873 NEFLP07196 543 aa4.73□□□□□ -1.65
CD44-234ENST00000531873 EIF4BP23588 611 aaKnown RBP4.73□□□□□ -1.65
CD44-234ENST00000531873 ITGAEP38570 1179 aa4.73□□□□□ -1.65
CD44-234ENST00000531873 TTC16Q8NEE8 873 aa4.73□□□□□ -1.65
CD44-234ENST00000531873 TGIF2Q9GZN2 237 aa4.73□□□□□ -1.65
CD44-234ENST00000531873 GPAMQ9HCL2 828 aa4.73□□□□□ -1.65
CD44-234ENST00000531873 GGA1Q9UJY5 639 aa4.73□□□□□ -1.65
CD44-234ENST00000531873 ATXN7L1Q9ULK2 861 aaPredicted RBP4.73□□□□□ -1.65
CD44-234ENST00000531873 SPG7Q9UQ90 795 aa4.73□□□□□ -1.65
CD44-234ENST00000531873 FNDC3AQ9Y2H6 1198 aaKnown RBP4.73□□□□□ -1.65
CD44-234ENST00000531873 EREGO14944 169 aa4.72□□□□□ -1.65
CD44-234ENST00000531873 PHACTR2O75167 634 aa4.72□□□□□ -1.65
CD44-234ENST00000531873 XYLBO75191 536 aa4.72□□□□□ -1.65
CD44-234ENST00000531873 POLR3DP05423 398 aaPredicted RBP4.72□□□□□ -1.65
CD44-234ENST00000531873 SAMD5Q5TGI4 173 aa4.72□□□□□ -1.65
CD44-234ENST00000531873 MEI1Q5TIA1 1274 aa4.72□□□□□ -1.65
CD44-234ENST00000531873 C1orf127Q8N9H9 656 aa4.72□□□□□ -1.65
CD44-234ENST00000531873 DRC1Q96MC2 740 aa4.72□□□□□ -1.65
CD44-234ENST00000531873 CEP63Q96MT8 703 aa4.72□□□□□ -1.65
CD44-234ENST00000531873 ZCCHC2Q9C0B9 1178 aaKnown RBP4.72□□□□□ -1.65
CD44-234ENST00000531873 ACBD3Q9H3P7 528 aa4.72□□□□□ -1.65
CD44-234ENST00000531873 BRD7Q9NPI1 651 aa4.72□□□□□ -1.65
CD44-234ENST00000531873 NDFIP2Q9NV92 336 aa4.72□□□□□ -1.65
CD44-234ENST00000531873 CNTN3Q9P232 1028 aa4.72□□□□□ -1.65
CD44-234ENST00000531873 HCN2Q9UL51 889 aa4.72□□□□□ -1.65
CD44-234ENST00000531873 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP4.72□□□□□ -1.65
CD44-234ENST00000531873 SHROOM4Q9ULL8 1493 aa4.71□□□□□ -1.66
CD44-234ENST00000531873 EFSO43281 561 aa4.71□□□□□ -1.66
CD44-234ENST00000531873 ARAFP10398 606 aa4.71□□□□□ -1.66
CD44-234ENST00000531873 BMP4P12644 408 aa4.71□□□□□ -1.66
CD44-234ENST00000531873 EPB42P16452 691 aa4.71□□□□□ -1.66
CD44-234ENST00000531873 KCNQ4P56696 695 aa4.71□□□□□ -1.66
CD44-234ENST00000531873 PTPN12Q05209 780 aaKnown RBP4.71□□□□□ -1.66
CD44-234ENST00000531873 ZNF394Q53GI3 561 aa4.71□□□□□ -1.66
CD44-234ENST00000531873 NLRP8Q86W28 1048 aa4.71□□□□□ -1.66
CD44-234ENST00000531873 GALNT12Q8IXK2 581 aa4.71□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 39.6 ms