RNA–Protein interactions for RNA: ENST00000527154.5

CHMP4A-203, Transcript of charged multivesicular body protein 4A, humanhuman

TSL 2

Gene CHMP4A, Length 571 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4A-203ENST00000527154 COPS6Q7L5N1 327 aa21.44■■□□□ 1.02
CHMP4A-203ENST00000527154 NECTIN2Q92692 538 aa21.44■■□□□ 1.02
CHMP4A-203ENST00000527154 NSFL1CQ9UNZ2 370 aaKnown RBP21.44■■□□□ 1.02
CHMP4A-203ENST00000527154 PITPNM2Q9BZ72 1349 aa21.44■■□□□ 1.02
CHMP4A-203ENST00000527154 ANXA1P04083 346 aa21.43■■□□□ 1.02
CHMP4A-203ENST00000527154 GPSM2P81274 684 aa21.43■■□□□ 1.02
CHMP4A-203ENST00000527154 PODXL2Q9NZ53 605 aa21.43■■□□□ 1.02
CHMP4A-203ENST00000527154 TM4SF4P48230 202 aa21.42■■□□□ 1.02
CHMP4A-203ENST00000527154 RBM26Q5T8P6 1007 aaKnown RBP21.42■■□□□ 1.02
CHMP4A-203ENST00000527154 FBXO46Q6PJ61 603 aaPredicted RBP21.42■■□□□ 1.02
CHMP4A-203ENST00000527154 TBC1D16Q8TBP0 767 aa21.42■■□□□ 1.02
CHMP4A-203ENST00000527154 XAGE3Q8WTP9 111 aa21.42■■□□□ 1.02
CHMP4A-203ENST00000527154 GMLQ99445 158 aa21.42■■□□□ 1.02
CHMP4A-203ENST00000527154 EYA3Q99504 573 aa21.42■■□□□ 1.02
CHMP4A-203ENST00000527154 AGBL3Q8NEM8 1001 aa21.41■■□□□ 1.02
CHMP4A-203ENST00000527154 EIF2S2P20042 333 aaKnown RBP21.4■■□□□ 1.02
CHMP4A-203ENST00000527154 ISCA1Q9BUE6 129 aa21.4■■□□□ 1.02
CHMP4A-203ENST00000527154 TSPYL4Q9UJ04 414 aa21.4■■□□□ 1.02
CHMP4A-203ENST00000527154 RIMBP2O15034 1052 aa21.39■■□□□ 1.01
CHMP4A-203ENST00000527154 DOK7Q18PE1 504 aa21.39■■□□□ 1.01
CHMP4A-203ENST00000527154 ANGEL2Q5VTE6 544 aaKnown RBP21.39■■□□□ 1.01
CHMP4A-203ENST00000527154 PSME4Q14997 1843 aa21.39■■□□□ 1.01
CHMP4A-203ENST00000527154 C6orf229H3BNL8 230 aa21.38■■□□□ 1.01
CHMP4A-203ENST00000527154 GPR25O00155 361 aa21.38■■□□□ 1.01
CHMP4A-203ENST00000527154 NEFMP07197 916 aa21.38■■□□□ 1.01
CHMP4A-203ENST00000527154 SCARF1Q14162 830 aa21.38■■□□□ 1.01
CHMP4A-203ENST00000527154 HABP4Q5JVS0 413 aaKnown RBP21.38■■□□□ 1.01
CHMP4A-203ENST00000527154 HDAC9Q9UKV0 1011 aa21.38■■□□□ 1.01
CHMP4A-203ENST00000527154 TBC1D8O95759 1140 aa21.37■■□□□ 1.01
CHMP4A-203ENST00000527154 RSBN1LQ6PCB5 846 aaPredicted RBP21.37■■□□□ 1.01
CHMP4A-203ENST00000527154 BRCA2P51587 3418 aa21.36■■□□□ 1.01
CHMP4A-203ENST00000527154 RPS8P62241 208 aaKnown RBP21.36■■□□□ 1.01
CHMP4A-203ENST00000527154 TRIM28Q13263 835 aaKnown RBP21.36■■□□□ 1.01
CHMP4A-203ENST00000527154 AIMP1Q12904 312 aaKnown RBP21.35■■□□□ 1.01
CHMP4A-203ENST00000527154 MOB2Q70IA6 237 aa21.35■■□□□ 1.01
CHMP4A-203ENST00000527154 FAM89AQ96GI7 184 aa21.35■■□□□ 1.01
CHMP4A-203ENST00000527154 ZC3H12CQ9C0D7 883 aaKnown RBP21.35■■□□□ 1.01
CHMP4A-203ENST00000527154 CENPFP49454 3210 aa21.34■■□□□ 1.01
CHMP4A-203ENST00000527154 PLBD2Q8NHP8 589 aa21.34■■□□□ 1.01
CHMP4A-203ENST00000527154 MYOZ2Q9NPC6 264 aa21.33■■□□□ 1.01
CHMP4A-203ENST00000527154 UBE2Q2LH0YL09 131 aa21.31■■□□□ 1
CHMP4A-203ENST00000527154 FKTNO75072 461 aa21.31■■□□□ 1
CHMP4A-203ENST00000527154 USP17L8P0C7I0 530 aa21.31■■□□□ 1
CHMP4A-203ENST00000527154 R3HDMLQ9H3Y0 253 aa21.31■■□□□ 1
CHMP4A-203ENST00000527154 ANKRD13DQ6ZTN6 518 aa21.3■■□□□ 1
CHMP4A-203ENST00000527154 PNNQ9H307 717 aaKnown RBP21.3■■□□□ 1
CHMP4A-203ENST00000527154 UFL1O94874 794 aa21.29■■□□□ 1
CHMP4A-203ENST00000527154 SREBF2Q12772 1141 aa21.29■■□□□ 1
CHMP4A-203ENST00000527154 PODNQ7Z5L7 613 aa21.29■■□□□ 1
CHMP4A-203ENST00000527154 CCER1Q8TC90 406 aaPredicted RBP21.29■■□□□ 1
CHMP4A-203ENST00000527154 CHPF2Q9P2E5 772 aa21.29■■□□□ 1
CHMP4A-203ENST00000527154 GGA1Q9UJY5 639 aa21.29■■□□□ 1
CHMP4A-203ENST00000527154 ZNF646O15015 1829 aaPredicted RBP21.29■■□□□ 1
CHMP4A-203ENST00000527154 RBBP6Q7Z6E9 1792 aaKnown RBP21.28■■□□□ 1
CHMP4A-203ENST00000527154 CHL1O00533 1208 aa21.28■■□□□ 1
CHMP4A-203ENST00000527154 IRS4O14654 1257 aaPredicted RBP21.28■■□□□ 1
CHMP4A-203ENST00000527154 INTS3Q68E01 1043 aaKnown RBP21.28■■□□□ 1
CHMP4A-203ENST00000527154 MAPK8IP3Q9UPT6 1336 aa21.28■■□□□ 1
CHMP4A-203ENST00000527154 HOXB7P09629 217 aa21.27■■□□□ 1
CHMP4A-203ENST00000527154 FXR1P51114 621 aaKnown RBP eCLIP21.27■■□□□ 1
CHMP4A-203ENST00000527154 KRT24Q2M2I5 525 aa21.27■■□□□ 1
CHMP4A-203ENST00000527154 LDLRAD1Q5T700 205 aa21.27■■□□□ 1
CHMP4A-203ENST00000527154 SEC31BQ9NQW1 1179 aa21.27■■□□□ 1
CHMP4A-203ENST00000527154 LAMB1P07942 1786 aa21.26■□□□□ 0.99
CHMP4A-203ENST00000527154 POTEFA5A3E0 1075 aa21.26■□□□□ 0.99
CHMP4A-203ENST00000527154 USP17L3A6NCW0 530 aa21.26■□□□□ 0.99
CHMP4A-203ENST00000527154 USP17L4A6NCW7 530 aa21.26■□□□□ 0.99
CHMP4A-203ENST00000527154 ATP5J2-PTCD1G3V325 749 aa21.26■□□□□ 0.99
CHMP4A-203ENST00000527154 RIPK4P57078 832 aa21.26■□□□□ 0.99
CHMP4A-203ENST00000527154 NBPF9Q3BBW0 867 aa21.26■□□□□ 0.99
CHMP4A-203ENST00000527154 USP17L1Q7RTZ2 530 aa21.26■□□□□ 0.99
CHMP4A-203ENST00000527154 WNT10BO00744 389 aa21.25■□□□□ 0.99
CHMP4A-203ENST00000527154 PRAMEF18Q5VWM3 479 aa21.25■□□□□ 0.99
CHMP4A-203ENST00000527154 ZBTB38Q8NAP3 1195 aaPredicted RBP21.25■□□□□ 0.99
CHMP4A-203ENST00000527154 ZNF428Q96B54 188 aa21.25■□□□□ 0.99
CHMP4A-203ENST00000527154 SCAF8Q9UPN6 1271 aaKnown RBP21.25■□□□□ 0.99
CHMP4A-203ENST00000527154 KIAA0100Q14667 2235 aaKnown RBP21.24■□□□□ 0.99
CHMP4A-203ENST00000527154 ALDH1A1P00352 501 aa21.24■□□□□ 0.99
CHMP4A-203ENST00000527154 TMPOP42166 694 aaKnown RBP21.24■□□□□ 0.99
CHMP4A-203ENST00000527154 MMP14P50281 582 aa21.24■□□□□ 0.99
CHMP4A-203ENST00000527154 PTPN12Q05209 780 aaKnown RBP21.24■□□□□ 0.99
CHMP4A-203ENST00000527154 DACT2Q5SW24 774 aa21.24■□□□□ 0.99
CHMP4A-203ENST00000527154 SPRYD7Q5W111 196 aa21.24■□□□□ 0.99
CHMP4A-203ENST00000527154 OTOP1Q7RTM1 612 aa21.24■□□□□ 0.99
CHMP4A-203ENST00000527154 ANKIB1Q9P2G1 1089 aa21.24■□□□□ 0.99
CHMP4A-203ENST00000527154 DBF4Q9UBU7 674 aaPredicted RBP21.24■□□□□ 0.99
CHMP4A-203ENST00000527154 XDHP47989 1333 aa21.24■□□□□ 0.99
CHMP4A-203ENST00000527154 LMOD3Q0VAK6 560 aa21.22■□□□□ 0.99
CHMP4A-203ENST00000527154 MAP3K11Q16584 847 aa21.22■□□□□ 0.99
CHMP4A-203ENST00000527154 ARMC5Q96C12 935 aa21.22■□□□□ 0.99
CHMP4A-203ENST00000527154 ZBED3Q96IU2 234 aaPredicted RBP21.22■□□□□ 0.99
CHMP4A-203ENST00000527154 MED23Q9ULK4 1368 aa21.22■□□□□ 0.99
CHMP4A-203ENST00000527154 G3V3G9 751 aa21.21■□□□□ 0.99
CHMP4A-203ENST00000527154 ATP2B4P23634 1241 aa21.21■□□□□ 0.99
CHMP4A-203ENST00000527154 NF2P35240 595 aa21.21■□□□□ 0.99
CHMP4A-203ENST00000527154 INHBEP58166 350 aa21.21■□□□□ 0.99
CHMP4A-203ENST00000527154 RTL5Q5HYW3 569 aaPredicted RBP21.21■□□□□ 0.99
CHMP4A-203ENST00000527154 DCAF8Q5TAQ9 597 aa21.21■□□□□ 0.99
CHMP4A-203ENST00000527154 HDGFL1Q5TGJ6 251 aa21.21■□□□□ 0.99
CHMP4A-203ENST00000527154 SZT2Q5T011 3432 aa21.2■□□□□ 0.98
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms