RNA–Protein interactions for RNA: ENST00000524922.1

CD44-212, Transcript of CD44 molecule (Indian blood group), human

TSL 3

Gene CD44, Length 352 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-212	ENST00000524922	CMTR1	Q8N1G2	835 aa	Known RBP	3.87	□□□□□ -1.79
CD44-212	ENST00000524922	TMEM130	Q8N3G9	435 aa		3.87	□□□□□ -1.79
CD44-212	ENST00000524922	OR13H1	Q8NG92	308 aa		3.87	□□□□□ -1.79
CD44-212	ENST00000524922	TP53INP1	Q96A56	240 aa		3.87	□□□□□ -1.79
CD44-212	ENST00000524922	NSUN5	Q96P11	429 aa	Known RBP	3.87	□□□□□ -1.79
CD44-212	ENST00000524922	TRIM33	Q9UPN9	1127 aa		3.87	□□□□□ -1.79
CD44-212	ENST00000524922	TNFRSF11A	Q9Y6Q6	616 aa	Predicted RBP	3.87	□□□□□ -1.79
CD44-212	ENST00000524922		F8W735	103 aa	Predicted RBP	3.86	□□□□□ -1.79
CD44-212	ENST00000524922	KIF4A	O95239	1232 aa		3.86	□□□□□ -1.79
CD44-212	ENST00000524922	EIF2AK2	P19525	551 aa	Known RBP	3.86	□□□□□ -1.79
CD44-212	ENST00000524922	BRD2	P25440	801 aa	Known RBP	3.86	□□□□□ -1.79
CD44-212	ENST00000524922	GALNT11	Q8NCW6	608 aa		3.86	□□□□□ -1.79
CD44-212	ENST00000524922	VTI1A	Q96AJ9	217 aa		3.86	□□□□□ -1.79
CD44-212	ENST00000524922	KRTAP4-12	Q9BQ66	201 aa		3.86	□□□□□ -1.79
CD44-212	ENST00000524922	USP21	Q9UK80	565 aa		3.86	□□□□□ -1.79
CD44-212	ENST00000524922	HYAL3	O43820	417 aa	Predicted RBP	3.85	□□□□□ -1.79
CD44-212	ENST00000524922	ALX3	O95076	343 aa		3.85	□□□□□ -1.79
CD44-212	ENST00000524922	PSAP	P07602	524 aa		3.85	□□□□□ -1.79
CD44-212	ENST00000524922	ZAP70	P43403	619 aa		3.85	□□□□□ -1.79
CD44-212	ENST00000524922	LRP8	Q14114	963 aa		3.85	□□□□□ -1.79
CD44-212	ENST00000524922	IL22RA1	Q8N6P7	574 aa		3.85	□□□□□ -1.79
CD44-212	ENST00000524922	CEP120	Q8N960	986 aa		3.85	□□□□□ -1.79
CD44-212	ENST00000524922	ZFP64	Q9NPA5	681 aa		3.85	□□□□□ -1.79
CD44-212	ENST00000524922	UTP3	Q9NQZ2	479 aa	Known RBP eCLIP	3.85	□□□□□ -1.79	5e-38	■■■■■ 698.7
CD44-212	ENST00000524922	KCNK4	Q9NYG8	393 aa		3.85	□□□□□ -1.79
CD44-212	ENST00000524922	SEPT3	Q9UH03	358 aa		3.85	□□□□□ -1.79
CD44-212	ENST00000524922	WISP1	O95388	367 aa		3.84	□□□□□ -1.79
CD44-212	ENST00000524922	CYP2E1	P05181	493 aa	Predicted RBP	3.84	□□□□□ -1.79
CD44-212	ENST00000524922	SCNN1A	P37088	669 aa		3.84	□□□□□ -1.79
CD44-212	ENST00000524922	ATP11A	P98196	1134 aa		3.84	□□□□□ -1.79
CD44-212	ENST00000524922	NAA30	Q147X3	362 aa	Predicted RBP	3.84	□□□□□ -1.79
CD44-212	ENST00000524922	PRR23C	Q6ZRP0	262 aa		3.84	□□□□□ -1.79
CD44-212	ENST00000524922	ZC3HAV1	Q7Z2W4	902 aa	Known RBP	3.84	□□□□□ -1.79
CD44-212	ENST00000524922	UBL7	Q96S82	380 aa	Predicted RBP	3.84	□□□□□ -1.79
CD44-212	ENST00000524922	MKNK1	Q9BUB5	465 aa		3.84	□□□□□ -1.79
CD44-212	ENST00000524922	SRA1	Q9HD15	236 aa	Known RBP	3.84	□□□□□ -1.79
CD44-212	ENST00000524922	STIM2	Q9P246	746 aa		3.84	□□□□□ -1.79
CD44-212	ENST00000524922	UBAP1L	F5GYI3	381 aa		3.83	□□□□□ -1.8
CD44-212	ENST00000524922	NFKBIE	O00221	500 aa		3.83	□□□□□ -1.8
CD44-212	ENST00000524922	ADAM11	O75078	769 aa		3.83	□□□□□ -1.8
CD44-212	ENST00000524922	PTCD1	O75127	700 aa	Known RBP	3.83	□□□□□ -1.8
CD44-212	ENST00000524922	GDF6	Q6KF10	455 aa	Predicted RBP	3.83	□□□□□ -1.8
CD44-212	ENST00000524922	PBXIP1	Q96AQ6	731 aa		3.83	□□□□□ -1.8
CD44-212	ENST00000524922	MRPL18	Q9H0U6	180 aa	Known RBP	3.83	□□□□□ -1.8
CD44-212	ENST00000524922	AKTIP	Q9H8T0	292 aa		3.83	□□□□□ -1.8
CD44-212	ENST00000524922	CNTN3	Q9P232	1028 aa		3.83	□□□□□ -1.8
CD44-212	ENST00000524922	RNF112	Q9ULX5	631 aa		3.83	□□□□□ -1.8
CD44-212	ENST00000524922	NISCH	Q9Y2I1	1504 aa		3.83	□□□□□ -1.8
CD44-212	ENST00000524922	TMEM88B	A6NKF7	163 aa		3.82	□□□□□ -1.8
CD44-212	ENST00000524922	ARID4A	P29374	1257 aa	Predicted RBP	3.82	□□□□□ -1.8
CD44-212	ENST00000524922	XKR5	Q6UX68	686 aa		3.82	□□□□□ -1.8
CD44-212	ENST00000524922	KIAA1211	Q6ZU35	1233 aa		3.82	□□□□□ -1.8
CD44-212	ENST00000524922	ATCAY	Q86WG3	371 aa		3.82	□□□□□ -1.8
CD44-212	ENST00000524922	MAP4K3	Q8IVH8	894 aa		3.82	□□□□□ -1.8
CD44-212	ENST00000524922	ARMC10	Q8N2F6	343 aa		3.82	□□□□□ -1.8
CD44-212	ENST00000524922	AGGF1	Q8N302	714 aa	eCLIP	3.82	□□□□□ -1.8
CD44-212	ENST00000524922	GPR152	Q8TDT2	470 aa		3.82	□□□□□ -1.8
CD44-212	ENST00000524922	PIK3R5	Q8WYR1	880 aa		3.82	□□□□□ -1.8
CD44-212	ENST00000524922	POP1	Q99575	1024 aa	Known RBP	3.82	□□□□□ -1.8
CD44-212	ENST00000524922	ADAM19	Q9H013	955 aa		3.82	□□□□□ -1.8
CD44-212	ENST00000524922	RASSF4	Q9H2L5	321 aa		3.82	□□□□□ -1.8
CD44-212	ENST00000524922	ABI2	Q9NYB9	513 aa	Predicted RBP	3.82	□□□□□ -1.8
CD44-212	ENST00000524922	TMEM63C	Q9P1W3	806 aa		3.82	□□□□□ -1.8
CD44-212	ENST00000524922	SCO2	A0A1W2PP80	73 aa		3.81	□□□□□ -1.8
CD44-212	ENST00000524922	MED26	O95402	600 aa		3.81	□□□□□ -1.8
CD44-212	ENST00000524922	GHRH	P01286	108 aa		3.81	□□□□□ -1.8
CD44-212	ENST00000524922	ACPP	P15309	386 aa		3.81	□□□□□ -1.8
CD44-212	ENST00000524922	EPHA1	P21709	976 aa		3.81	□□□□□ -1.8
CD44-212	ENST00000524922	ATP2B4	P23634	1241 aa		3.81	□□□□□ -1.8
CD44-212	ENST00000524922	CD97	P48960	835 aa		3.81	□□□□□ -1.8
CD44-212	ENST00000524922	PDE12	Q6L8Q7	609 aa	Known RBP	3.81	□□□□□ -1.8
CD44-212	ENST00000524922	PHLDB3	Q6NSJ2	640 aa		3.81	□□□□□ -1.8
CD44-212	ENST00000524922	KRTAP19-1	Q8IUB9	90 aa		3.81	□□□□□ -1.8
CD44-212	ENST00000524922	CACTIN-AS1	Q8N1I8	211 aa		3.81	□□□□□ -1.8
CD44-212	ENST00000524922	FOXD4L4	Q8WXT5	416 aa	Predicted RBP	3.81	□□□□□ -1.8
CD44-212	ENST00000524922	PBX4	Q9BYU1	374 aa		3.81	□□□□□ -1.8
CD44-212	ENST00000524922	ZMYND15	Q9H091	742 aa		3.81	□□□□□ -1.8
CD44-212	ENST00000524922	CHRD	Q9H2X0	955 aa		3.81	□□□□□ -1.8
CD44-212	ENST00000524922	GGNBP2	Q9H3C7	697 aa		3.81	□□□□□ -1.8
CD44-212	ENST00000524922	SALL4	Q9UJQ4	1053 aa		3.81	□□□□□ -1.8
CD44-212	ENST00000524922	PPME1	Q9Y570	386 aa		3.81	□□□□□ -1.8
CD44-212	ENST00000524922	LINC01387	J3KSC0	135 aa		3.8	□□□□□ -1.8
CD44-212	ENST00000524922	NPR3	P17342	541 aa		3.8	□□□□□ -1.8
CD44-212	ENST00000524922	FST	P19883	344 aa		3.8	□□□□□ -1.8
CD44-212	ENST00000524922	HYAL2	Q12891	473 aa		3.8	□□□□□ -1.8
CD44-212	ENST00000524922	TXNDC11	Q6PKC3	985 aa		3.8	□□□□□ -1.8
CD44-212	ENST00000524922	HELQ	Q8TDG4	1101 aa		3.8	□□□□□ -1.8
CD44-212	ENST00000524922	NUDT16	Q96DE0	195 aa	Known RBP	3.8	□□□□□ -1.8
CD44-212	ENST00000524922	FAM46A	Q96IP4	442 aa	Known RBP	3.8	□□□□□ -1.8
CD44-212	ENST00000524922	HHIP	Q96QV1	700 aa		3.8	□□□□□ -1.8
CD44-212	ENST00000524922	MUC3B	Q9H195	1237 aa		3.8	□□□□□ -1.8
CD44-212	ENST00000524922	C1orf115	Q9H7X2	142 aa		3.8	□□□□□ -1.8
CD44-212	ENST00000524922	ELP3	Q9H9T3	547 aa		3.8	□□□□□ -1.8
CD44-212	ENST00000524922	SH2B1	Q9NRF2	756 aa	Predicted RBP	3.8	□□□□□ -1.8
CD44-212	ENST00000524922	FSCN2	O14926	492 aa		3.79	□□□□□ -1.8
CD44-212	ENST00000524922	DDX3Y	O15523	660 aa	Known RBP	3.79	□□□□□ -1.8
CD44-212	ENST00000524922	PDGFA	P04085	211 aa		3.79	□□□□□ -1.8
CD44-212	ENST00000524922	SSFA2	P28290	1259 aa		3.79	□□□□□ -1.8
CD44-212	ENST00000524922	CD68	P34810	354 aa	Predicted RBP	3.79	□□□□□ -1.8
CD44-212	ENST00000524922	CEP135	Q66GS9	1140 aa		3.79	□□□□□ -1.8

Retrieved 100 of 20,778 RNA–protein pairs in 117.5 ms