RNA–Protein interactions for RNA: ENST00000524521.1

VPS28-203, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best)

Gene VPS28, Length 564 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-203ENST00000524521 UFL1O94874 794 aa26.49■■□□□ 1.83
VPS28-203ENST00000524521 ITGA6P23229 1130 aa26.49■■□□□ 1.83
VPS28-203ENST00000524521 ALDH1L2Q3SY69 923 aa26.49■■□□□ 1.83
VPS28-203ENST00000524521 DBNDD1Q9H9R9 158 aa26.49■■□□□ 1.83
VPS28-203ENST00000524521 BSDC1Q9NW68 430 aaPredicted RBP26.49■■□□□ 1.83
VPS28-203ENST00000524521 PTPRCP08575 1304 aa26.48■■□□□ 1.83
VPS28-203ENST00000524521 IGHMBP2P38935 993 aaKnown RBP26.48■■□□□ 1.83
VPS28-203ENST00000524521 EPS15P42566 896 aa26.48■■□□□ 1.83
VPS28-203ENST00000524521 SCNN1DP51172 638 aa26.48■■□□□ 1.83
VPS28-203ENST00000524521 TNIP1Q15025 636 aa26.48■■□□□ 1.83
VPS28-203ENST00000524521 DOK7Q18PE1 504 aa26.48■■□□□ 1.83
VPS28-203ENST00000524521 FAM161AQ3B820 660 aa26.48■■□□□ 1.83
VPS28-203ENST00000524521 PNMA8AQ86V59 439 aaPredicted RBP26.48■■□□□ 1.83
VPS28-203ENST00000524521 LDHDQ86WU2 507 aa26.48■■□□□ 1.83
VPS28-203ENST00000524521 XDHP47989 1333 aa26.47■■□□□ 1.83
VPS28-203ENST00000524521 YDJCA8MPS7 323 aa26.47■■□□□ 1.83
VPS28-203ENST00000524521 FOXO4P98177 505 aa26.47■■□□□ 1.83
VPS28-203ENST00000524521 SMC4Q9NTJ3 1288 aa26.47■■□□□ 1.83
VPS28-203ENST00000524521 MINPP1Q9UNW1 487 aa26.47■■□□□ 1.83
VPS28-203ENST00000524521 G3V3G9 751 aa26.46■■□□□ 1.83
VPS28-203ENST00000524521 HTRA3P83110 453 aa26.46■■□□□ 1.83
VPS28-203ENST00000524521 DCAF8Q5TAQ9 597 aa26.46■■□□□ 1.83
VPS28-203ENST00000524521 CHMP3Q9Y3E7 222 aa26.46■■□□□ 1.83
VPS28-203ENST00000524521 CT47B1P0C2W7 299 aaPredicted RBP26.45■■□□□ 1.82
VPS28-203ENST00000524521 ATP2B4P23634 1241 aa26.45■■□□□ 1.82
VPS28-203ENST00000524521 MPHOSPH8Q99549 860 aa26.45■■□□□ 1.82
VPS28-203ENST00000524521 LTBP1Q14766 1721 aa26.45■■□□□ 1.82
VPS28-203ENST00000524521 ANKRD18BA2A2Z9 1011 aa26.44■■□□□ 1.82
VPS28-203ENST00000524521 ECE2O60344 883 aa26.44■■□□□ 1.82
VPS28-203ENST00000524521 GMPSP49915 693 aaPredicted RBP26.44■■□□□ 1.82
VPS28-203ENST00000524521 EPHA10Q5JZY3 1008 aa26.43■■□□□ 1.82
VPS28-203ENST00000524521 LMBR1LQ6UX01 489 aa26.43■■□□□ 1.82
VPS28-203ENST00000524521 GPRC5DQ9NZD1 345 aa26.43■■□□□ 1.82
VPS28-203ENST00000524521 SPEF2Q9C093 1822 aa26.42■■□□□ 1.82
VPS28-203ENST00000524521 HNRNPUQ00839 825 aaKnown RBP eCLIP26.42■■□□□ 1.82
VPS28-203ENST00000524521 IFIT5Q13325 482 aaKnown RBP26.42■■□□□ 1.82
VPS28-203ENST00000524521 KCNQ5Q9NR82 932 aa26.42■■□□□ 1.82
VPS28-203ENST00000524521 WTIPA6NIX2 430 aaPredicted RBP26.41■■□□□ 1.82
VPS28-203ENST00000524521 PSMD14O00487 310 aa26.4■■□□□ 1.82
VPS28-203ENST00000524521 NBPF7P0C2Y1 421 aaPredicted RBP26.4■■□□□ 1.82
VPS28-203ENST00000524521 CCT4P50991 539 aaKnown RBP26.4■■□□□ 1.82
VPS28-203ENST00000524521 USP50Q70EL3 339 aaPredicted RBP26.4■■□□□ 1.82
VPS28-203ENST00000524521 MAP1SQ66K74 1059 aaPredicted RBP26.39■■□□□ 1.82
VPS28-203ENST00000524521 DNAJC5GQ8N7S2 189 aa26.39■■□□□ 1.82
VPS28-203ENST00000524521 SUCLG2Q96I99 432 aa26.39■■□□□ 1.82
VPS28-203ENST00000524521 ANKRD2Q9GZV1 360 aa26.39■■□□□ 1.82
VPS28-203ENST00000524521 ADARB2Q9NS39 739 aaKnown RBP26.39■■□□□ 1.82
VPS28-203ENST00000524521 ZBTB12Q9Y330 459 aaPredicted RBP26.39■■□□□ 1.82
VPS28-203ENST00000524521 CCDC57Q2TAC2 916 aa26.38■■□□□ 1.81
VPS28-203ENST00000524521 CNOT7Q9UIV1 285 aaKnown RBP26.38■■□□□ 1.81
VPS28-203ENST00000524521 NOB1Q9ULX3 412 aaKnown RBP26.38■■□□□ 1.81
VPS28-203ENST00000524521 ITGBL1O95965 494 aaPredicted RBP26.37■■□□□ 1.81
VPS28-203ENST00000524521 CNTROBQ8N137 903 aa26.37■■□□□ 1.81
VPS28-203ENST00000524521 LEMD3Q9Y2U8 911 aa26.37■■□□□ 1.81
VPS28-203ENST00000524521 UTYO14607 1347 aa26.37■■□□□ 1.81
VPS28-203ENST00000524521 RARSP54136 660 aaKnown RBP26.36■■□□□ 1.81
VPS28-203ENST00000524521 CHRNDQ07001 517 aa26.36■■□□□ 1.81
VPS28-203ENST00000524521 TAF7LQ5H9L4 462 aa26.36■■□□□ 1.81
VPS28-203ENST00000524521 KAZALD1Q96I82 304 aa26.36■■□□□ 1.81
VPS28-203ENST00000524521 ZNF594Q96JF6 807 aaPredicted RBP26.36■■□□□ 1.81
VPS28-203ENST00000524521 H7C1D1 291 aa26.35■■□□□ 1.81
VPS28-203ENST00000524521 DPF2Q92785 391 aa26.35■■□□□ 1.81
VPS28-203ENST00000524521 ADAMTSL1Q8N6G6 1762 aa26.35■■□□□ 1.81
VPS28-203ENST00000524521 SHTN1A0MZ66 631 aa26.34■■□□□ 1.81
VPS28-203ENST00000524521 BRPF1P55201 1214 aaPredicted RBP26.34■■□□□ 1.81
VPS28-203ENST00000524521 MICALL2Q8IY33 904 aa26.34■■□□□ 1.81
VPS28-203ENST00000524521 USP44Q9H0E7 712 aa26.34■■□□□ 1.81
VPS28-203ENST00000524521 ZNF804BA4D1E1 1349 aa26.34■■□□□ 1.81
VPS28-203ENST00000524521 PASKQ96RG2 1323 aa26.34■■□□□ 1.81
VPS28-203ENST00000524521 MED23Q9ULK4 1368 aa26.33■■□□□ 1.81
VPS28-203ENST00000524521 VIL1P09327 827 aaKnown RBP26.33■■□□□ 1.81
VPS28-203ENST00000524521 KCNJ4P48050 445 aa26.33■■□□□ 1.81
VPS28-203ENST00000524521 LDHAL6AQ6ZMR3 332 aa26.33■■□□□ 1.81
VPS28-203ENST00000524521 PODNQ7Z5L7 613 aa26.33■■□□□ 1.81
VPS28-203ENST00000524521 HELBQ8NG08 1087 aaPredicted RBP26.33■■□□□ 1.81
VPS28-203ENST00000524521 BICC1Q9H694 974 aaKnown RBP26.33■■□□□ 1.81
VPS28-203ENST00000524521 TAF5LO75529 589 aa26.32■■□□□ 1.8
VPS28-203ENST00000524521 RPS12P25398 132 aaKnown RBP26.32■■□□□ 1.8
VPS28-203ENST00000524521 KLRG1Q96E93 195 aa26.32■■□□□ 1.8
VPS28-203ENST00000524521 API5Q9BZZ5 524 aaKnown RBP26.32■■□□□ 1.8
VPS28-203ENST00000524521 TXNRD3Q86VQ6 643 aa26.31■■□□□ 1.8
VPS28-203ENST00000524521 CNNM1Q9NRU3 951 aa26.31■■□□□ 1.8
VPS28-203ENST00000524521 CEP350Q5VT06 3117 aa26.31■■□□□ 1.8
VPS28-203ENST00000524521 SCN9AQ15858 1988 aa26.3■■□□□ 1.8
VPS28-203ENST00000524521 PLIN1O60240 522 aa26.3■■□□□ 1.8
VPS28-203ENST00000524521 HIRAP54198 1017 aaPredicted RBP26.3■■□□□ 1.8
VPS28-203ENST00000524521 TRPM4Q8TD43 1214 aa26.3■■□□□ 1.8
VPS28-203ENST00000524521 CREBZFQ9NS37 354 aa26.3■■□□□ 1.8
VPS28-203ENST00000524521 USP17L3A6NCW0 530 aa26.29■■□□□ 1.8
VPS28-203ENST00000524521 USP17L4A6NCW7 530 aa26.29■■□□□ 1.8
VPS28-203ENST00000524521 SNAP23O00161 211 aa26.29■■□□□ 1.8
VPS28-203ENST00000524521 USP17L1Q7RTZ2 530 aa26.29■■□□□ 1.8
VPS28-203ENST00000524521 SAMD7Q7Z3H4 446 aa26.29■■□□□ 1.8
VPS28-203ENST00000524521 COA1Q9GZY4 146 aa26.29■■□□□ 1.8
VPS28-203ENST00000524521 KLRK1P26718 216 aa26.28■■□□□ 1.8
VPS28-203ENST00000524521 RABL6Q3YEC7 729 aaPredicted RBP26.28■■□□□ 1.8
VPS28-203ENST00000524521 RBM26Q5T8P6 1007 aaKnown RBP26.28■■□□□ 1.8
VPS28-203ENST00000524521 RSBN1LQ6PCB5 846 aaPredicted RBP26.28■■□□□ 1.8
VPS28-203ENST00000524521 ANKRD44Q8N8A2 993 aa26.28■■□□□ 1.8
VPS28-203ENST00000524521 TBC1D10BQ4KMP7 808 aaPredicted RBP26.27■■□□□ 1.8
Retrieved 100 of 20,778 RNA–protein pairs in 66 ms