RNA–Protein interactions for RNA: ENST00000513352.1

NUP54-213, Transcript of nucleoporin 54, humanhuman

TSL 4

Gene NUP54, Length 579 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-213ENST00000513352 SSH3Q8TE77 659 aa18.58■□□□□ 0.56
NUP54-213ENST00000513352 ANKIB1Q9P2G1 1089 aa18.58■□□□□ 0.56
NUP54-213ENST00000513352 PCDHB15Q9Y5E8 787 aa18.58■□□□□ 0.56
NUP54-213ENST00000513352 G3BP1Q13283 466 aaKnown RBP eCLIP18.57■□□□□ 0.56
NUP54-213ENST00000513352 METTL24Q5JXM2 366 aa18.57■□□□□ 0.56
NUP54-213ENST00000513352 CC2D2BQ6DHV5 1058 aa18.57■□□□□ 0.56
NUP54-213ENST00000513352 DPP8Q6V1X1 898 aaPredicted RBP18.57■□□□□ 0.56
NUP54-213ENST00000513352 ARHGAP27Q6ZUM4 889 aa18.57■□□□□ 0.56
NUP54-213ENST00000513352 SIRT2Q8IXJ6 389 aa18.57■□□□□ 0.56
NUP54-213ENST00000513352 C7orf43Q8WVR3 580 aa18.57■□□□□ 0.56
NUP54-213ENST00000513352 MINPP1Q9UNW1 487 aa18.57■□□□□ 0.56
NUP54-213ENST00000513352 NSFL1CQ9UNZ2 370 aaKnown RBP18.57■□□□□ 0.56
NUP54-213ENST00000513352 EYA2O00167 538 aa18.56■□□□□ 0.56
NUP54-213ENST00000513352 SURF6O75683 361 aaKnown RBP18.56■□□□□ 0.56
NUP54-213ENST00000513352 GPSM2P81274 684 aa18.56■□□□□ 0.56
NUP54-213ENST00000513352 CHRNDQ07001 517 aa18.56■□□□□ 0.56
NUP54-213ENST00000513352 RTKN2Q8IZC4 609 aa18.56■□□□□ 0.56
NUP54-213ENST00000513352 MPNDQ8N594 471 aa18.56■□□□□ 0.56
NUP54-213ENST00000513352 HELBQ8NG08 1087 aaPredicted RBP18.56■□□□□ 0.56
NUP54-213ENST00000513352 COPRSQ9NQ92 184 aa18.56■□□□□ 0.56
NUP54-213ENST00000513352 A0A1B0GUL6 1792 aa18.55■□□□□ 0.56
NUP54-213ENST00000513352 KCNJ4P48050 445 aa18.55■□□□□ 0.56
NUP54-213ENST00000513352 ANKRD2Q9GZV1 360 aa18.55■□□□□ 0.56
NUP54-213ENST00000513352 XDHP47989 1333 aa18.54■□□□□ 0.56
NUP54-213ENST00000513352 MROH5Q6ZUA9 1318 aa18.54■□□□□ 0.56
NUP54-213ENST00000513352 C6orf229H3BNL8 230 aa18.54■□□□□ 0.56
NUP54-213ENST00000513352 APBB1O00213 710 aa18.54■□□□□ 0.56
NUP54-213ENST00000513352 GRIN3BO60391 1043 aa18.54■□□□□ 0.56
NUP54-213ENST00000513352 CIAO1O76071 339 aa18.54■□□□□ 0.56
NUP54-213ENST00000513352 UFL1O94874 794 aa18.54■□□□□ 0.56
NUP54-213ENST00000513352 RASSF7Q02833 373 aa18.54■□□□□ 0.56
NUP54-213ENST00000513352 GGA1Q9UJY5 639 aa18.54■□□□□ 0.56
NUP54-213ENST00000513352 EXOC6BQ9Y2D4 811 aa18.54■□□□□ 0.56
NUP54-213ENST00000513352 RIPOR2Q9Y4F9 1068 aa18.54■□□□□ 0.56
NUP54-213ENST00000513352 FER1L6Q2WGJ9 1857 aa18.54■□□□□ 0.56
NUP54-213ENST00000513352 TAF5LO75529 589 aa18.53■□□□□ 0.56
NUP54-213ENST00000513352 IL15P40933 162 aaPredicted RBP18.53■□□□□ 0.56
NUP54-213ENST00000513352 GRIPAP1Q4V328 841 aa18.53■□□□□ 0.56
NUP54-213ENST00000513352 BCL11AQ9H165 835 aa18.53■□□□□ 0.56
NUP54-213ENST00000513352 TAOK3Q9H2K8 898 aa18.53■□□□□ 0.56
NUP54-213ENST00000513352 FBXO3Q9UK99 471 aa18.53■□□□□ 0.56
NUP54-213ENST00000513352 ATP2B4P23634 1241 aa18.52■□□□□ 0.56
NUP54-213ENST00000513352 FKBP4Q02790 459 aaKnown RBP eCLIP18.52■□□□□ 0.56
NUP54-213ENST00000513352 HSP90AB4PQ58FF6 505 aa18.52■□□□□ 0.56
NUP54-213ENST00000513352 ATG9AQ7Z3C6 839 aa18.52■□□□□ 0.56
NUP54-213ENST00000513352 CEP126Q9P2H0 1117 aa18.52■□□□□ 0.56
NUP54-213ENST00000513352 SUPT20HQ8NEM7 779 aa18.51■□□□□ 0.55
NUP54-213ENST00000513352 GPR101Q96P66 508 aaPredicted RBP18.51■□□□□ 0.55
NUP54-213ENST00000513352 CCDC88AQ3V6T2 1871 aa18.5■□□□□ 0.55
NUP54-213ENST00000513352 LTBP1Q14766 1721 aa18.5■□□□□ 0.55
NUP54-213ENST00000513352 NFKBIEO00221 500 aa18.5■□□□□ 0.55
NUP54-213ENST00000513352 TFCP2Q12800 502 aa18.5■□□□□ 0.55
NUP54-213ENST00000513352 TBC1D16Q8TBP0 767 aa18.5■□□□□ 0.55
NUP54-213ENST00000513352 RWDD1Q9H446 243 aaPredicted RBP18.5■□□□□ 0.55
NUP54-213ENST00000513352 ZNF277Q9NRM2 450 aaPredicted RBP18.5■□□□□ 0.55
NUP54-213ENST00000513352 PODXL2Q9NZ53 605 aa18.5■□□□□ 0.55
NUP54-213ENST00000513352 NOP58Q9Y2X3 529 aaKnown RBP18.5■□□□□ 0.55
NUP54-213ENST00000513352 GOLGB1Q14789 3259 aaKnown RBP18.49■□□□□ 0.55
NUP54-213ENST00000513352 SNAP23O00161 211 aa18.49■□□□□ 0.55
NUP54-213ENST00000513352 RIMBP2O15034 1052 aa18.49■□□□□ 0.55
NUP54-213ENST00000513352 ERC1Q8IUD2 1116 aa18.49■□□□□ 0.55
NUP54-213ENST00000513352 PSMD1Q99460 953 aa18.49■□□□□ 0.55
NUP54-213ENST00000513352 EYA3Q99504 573 aa18.49■□□□□ 0.55
NUP54-213ENST00000513352 POLLQ9UGP5 575 aa18.49■□□□□ 0.55
NUP54-213ENST00000513352 LEMD3Q9Y2U8 911 aa18.49■□□□□ 0.55
NUP54-213ENST00000513352 DUOX1Q9NRD9 1551 aa18.49■□□□□ 0.55
NUP54-213ENST00000513352 SNED1Q8TER0 1413 aa18.49■□□□□ 0.55
NUP54-213ENST00000513352 ZNF804BA4D1E1 1349 aa18.49■□□□□ 0.55
NUP54-213ENST00000513352 PPIP5K2O43314 1243 aa18.48■□□□□ 0.55
NUP54-213ENST00000513352 PDE8BO95263 885 aa18.48■□□□□ 0.55
NUP54-213ENST00000513352 HDAC1Q13547 482 aaPredicted RBP18.48■□□□□ 0.55
NUP54-213ENST00000513352 PUM3Q15397 648 aaKnown RBP18.48■□□□□ 0.55
NUP54-213ENST00000513352 WTIPA6NIX2 430 aaPredicted RBP18.47■□□□□ 0.55
NUP54-213ENST00000513352 G3V3G9 751 aa18.47■□□□□ 0.55
NUP54-213ENST00000513352 ATP2B3Q16720 1220 aa18.47■□□□□ 0.55
NUP54-213ENST00000513352 AOC3Q16853 763 aa18.47■□□□□ 0.55
NUP54-213ENST00000513352 WASHC4Q2M389 1173 aa18.47■□□□□ 0.55
NUP54-213ENST00000513352 DCAF8Q5TAQ9 597 aa18.47■□□□□ 0.55
NUP54-213ENST00000513352 VGLL2Q8N8G2 317 aa18.47■□□□□ 0.55
NUP54-213ENST00000513352 RTFDC1Q9BY42 306 aaPredicted RBP18.47■□□□□ 0.55
NUP54-213ENST00000513352 LTBP3Q9NS15 1303 aa18.47■□□□□ 0.55
NUP54-213ENST00000513352 RAB11FIP3O75154 756 aa18.46■□□□□ 0.55
NUP54-213ENST00000513352 SASH1O94885 1247 aa18.46■□□□□ 0.55
NUP54-213ENST00000513352 IFIT1P09914 478 aaKnown RBP18.46■□□□□ 0.55
NUP54-213ENST00000513352 SLC5A1P13866 664 aa18.46■□□□□ 0.55
NUP54-213ENST00000513352 IARSP41252 1262 aaKnown RBP18.46■□□□□ 0.55
NUP54-213ENST00000513352 UBE4AQ14139 1066 aa18.46■□□□□ 0.55
NUP54-213ENST00000513352 LARGE2Q8N3Y3 721 aa18.46■□□□□ 0.55
NUP54-213ENST00000513352 KIF1BPQ96EK5 621 aa18.46■□□□□ 0.55
NUP54-213ENST00000513352 ZC3H12CQ9C0D7 883 aaKnown RBP18.46■□□□□ 0.55
NUP54-213ENST00000513352 DCTPP1Q9H773 170 aa18.46■□□□□ 0.55
NUP54-213ENST00000513352 ZBTB47Q9UFB7 747 aaPredicted RBP18.46■□□□□ 0.55
NUP54-213ENST00000513352 AKAP2Q9Y2D5 859 aa18.46■□□□□ 0.55
NUP54-213ENST00000513352 SBF1O95248 1867 aa18.46■□□□□ 0.54
NUP54-213ENST00000513352 IGHDP01880 384 aa18.45■□□□□ 0.54
NUP54-213ENST00000513352 LMNB1P20700 586 aa18.45■□□□□ 0.54
NUP54-213ENST00000513352 KLRK1P26718 216 aa18.45■□□□□ 0.54
NUP54-213ENST00000513352 RHPN1Q8TCX5 695 aa18.45■□□□□ 0.54
NUP54-213ENST00000513352 IL1RAPL2Q9NP60 686 aa18.45■□□□□ 0.54
NUP54-213ENST00000513352 RNF181Q9P0P0 153 aa18.45■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 43.9 ms