RNA–Protein interactions for RNA: ENST00000508466.1

LIMCH1-207, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 2

Gene LIMCH1, Length 3,051 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-207ENST00000508466 STX1AQ16623 288 aa8.39□□□□□ -1.07
LIMCH1-207ENST00000508466 HSP90B2PQ58FF3 399 aa8.39□□□□□ -1.07
LIMCH1-207ENST00000508466 ARHGAP45Q92619 1136 aa8.39□□□□□ -1.07
LIMCH1-207ENST00000508466 CABP1Q9NZU7 370 aa8.39□□□□□ -1.07
LIMCH1-207ENST00000508466 VWA3AA6NCI4 1184 aa8.39□□□□□ -1.07
LIMCH1-207ENST00000508466 SGSM2O43147 1006 aa8.39□□□□□ -1.07
LIMCH1-207ENST00000508466 ANXA1P04083 346 aa8.39□□□□□ -1.07
LIMCH1-207ENST00000508466 ANAPC15P60006 121 aa8.39□□□□□ -1.07
LIMCH1-207ENST00000508466 CCDC158Q5M9N0 1113 aa8.39□□□□□ -1.07
LIMCH1-207ENST00000508466 AXDND1Q5T1B0 1012 aaPredicted RBP8.39□□□□□ -1.07
LIMCH1-207ENST00000508466 VPS53Q5VIR6 699 aa8.39□□□□□ -1.07
LIMCH1-207ENST00000508466 JAKMIP3Q5VZ66 844 aa8.39□□□□□ -1.07
LIMCH1-207ENST00000508466 USP28Q96RU2 1077 aa8.39□□□□□ -1.07
LIMCH1-207ENST00000508466 TFR2Q9UP52 801 aa8.39□□□□□ -1.07
LIMCH1-207ENST00000508466 EPB41L3Q9Y2J2 1087 aaPredicted RBP8.39□□□□□ -1.07
LIMCH1-207ENST00000508466 GNAI2P04899 355 aa8.38□□□□□ -1.07
LIMCH1-207ENST00000508466 SEMA3FQ13275 785 aa8.38□□□□□ -1.07
LIMCH1-207ENST00000508466 MAP9Q49MG5 647 aa8.38□□□□□ -1.07
LIMCH1-207ENST00000508466 RNF20Q5VTR2 975 aa8.38□□□□□ -1.07
LIMCH1-207ENST00000508466 TICAM2Q86XR7 235 aa8.38□□□□□ -1.07
LIMCH1-207ENST00000508466 GIMAP7Q8NHV1 300 aa8.38□□□□□ -1.07
LIMCH1-207ENST00000508466 N4BP2L2Q92802 583 aaPredicted RBP8.38□□□□□ -1.07
LIMCH1-207ENST00000508466 SCAND2PQ9GZW5 306 aaPredicted RBP8.38□□□□□ -1.07
LIMCH1-207ENST00000508466 NPHP3Q7Z494 1330 aa8.38□□□□□ -1.07
LIMCH1-207ENST00000508466 ATP10DQ9P241 1426 aa8.38□□□□□ -1.07
LIMCH1-207ENST00000508466 KIF2AO00139 706 aaPredicted RBP8.38□□□□□ -1.07
LIMCH1-207ENST00000508466 CCDC73Q6ZRK6 1079 aa8.38□□□□□ -1.07
LIMCH1-207ENST00000508466 CEP57L1Q8IYX8 460 aa8.38□□□□□ -1.07
LIMCH1-207ENST00000508466 PPP2R2CQ9Y2T4 447 aa8.38□□□□□ -1.07
LIMCH1-207ENST00000508466 WDR62O43379 1518 aa8.38□□□□□ -1.07
LIMCH1-207ENST00000508466 TTC21AQ8NDW8 1320 aa8.38□□□□□ -1.07
LIMCH1-207ENST00000508466 NCKAP5LQ9HCH0 1330 aa8.38□□□□□ -1.07
LIMCH1-207ENST00000508466 IVLP07476 585 aa8.38□□□□□ -1.07
LIMCH1-207ENST00000508466 NDUFA8P51970 172 aa8.38□□□□□ -1.07
LIMCH1-207ENST00000508466 UBASH3AP57075 661 aa8.38□□□□□ -1.07
LIMCH1-207ENST00000508466 SCRN1Q12765 414 aa8.38□□□□□ -1.07
LIMCH1-207ENST00000508466 SNX1Q13596 522 aa8.38□□□□□ -1.07
LIMCH1-207ENST00000508466 GBP6Q6ZN66 633 aa8.38□□□□□ -1.07
LIMCH1-207ENST00000508466 CFAP44Q96MT7 982 aa8.38□□□□□ -1.07
LIMCH1-207ENST00000508466 PA2G4Q9UQ80 394 aaKnown RBP8.38□□□□□ -1.07
LIMCH1-207ENST00000508466 FAM169AQ9Y6X4 670 aa8.38□□□□□ -1.07
LIMCH1-207ENST00000508466 PPP1R12BO60237 982 aaPredicted RBP8.37□□□□□ -1.07
LIMCH1-207ENST00000508466 RNF40O75150 1001 aa8.37□□□□□ -1.07
LIMCH1-207ENST00000508466 MARCKSP29966 332 aaPredicted RBP8.37□□□□□ -1.07
LIMCH1-207ENST00000508466 CHMP4BP1P59074 171 aa8.37□□□□□ -1.07
LIMCH1-207ENST00000508466 FANCCQ00597 558 aa8.37□□□□□ -1.07
LIMCH1-207ENST00000508466 SATB1Q01826 763 aa8.37□□□□□ -1.07
LIMCH1-207ENST00000508466 SPECC1Q5M775 1068 aa8.37□□□□□ -1.07
LIMCH1-207ENST00000508466 BEND6Q5SZJ8 279 aaPredicted RBP8.37□□□□□ -1.07
LIMCH1-207ENST00000508466 NOA1Q8NC60 698 aaKnown RBP8.37□□□□□ -1.07
LIMCH1-207ENST00000508466 ANKZF1Q9H8Y5 726 aa8.37□□□□□ -1.07
LIMCH1-207ENST00000508466 RBM8AQ9Y5S9 174 aaKnown RBP8.37□□□□□ -1.07
LIMCH1-207ENST00000508466 EME2A4GXA9 379 aaPredicted RBP8.37□□□□□ -1.07
LIMCH1-207ENST00000508466 ENC1O14682 589 aa8.37□□□□□ -1.07
LIMCH1-207ENST00000508466 BACH1O14867 736 aa8.37□□□□□ -1.07
LIMCH1-207ENST00000508466 ZEB2O60315 1214 aa8.37□□□□□ -1.07
LIMCH1-207ENST00000508466 NEMFO60524 1076 aa8.37□□□□□ -1.07
LIMCH1-207ENST00000508466 LGR5O75473 907 aa8.37□□□□□ -1.07
LIMCH1-207ENST00000508466 ZNF202O95125 648 aa8.37□□□□□ -1.07
LIMCH1-207ENST00000508466 CASP8Q14790 479 aa8.37□□□□□ -1.07
LIMCH1-207ENST00000508466 SF3A1Q15459 793 aaKnown RBP8.37□□□□□ -1.07
LIMCH1-207ENST00000508466 NCAPH2Q6IBW4 605 aa8.37□□□□□ -1.07
LIMCH1-207ENST00000508466 PROSER2Q86WR7 435 aaPredicted RBP8.37□□□□□ -1.07
LIMCH1-207ENST00000508466 GPR161Q8N6U8 529 aaKnown RBP8.37□□□□□ -1.07
LIMCH1-207ENST00000508466 MRPL44Q9H9J2 332 aaKnown RBP8.37□□□□□ -1.07
LIMCH1-207ENST00000508466 TERF2IPQ9NYB0 399 aa8.37□□□□□ -1.07
LIMCH1-207ENST00000508466 FCHSD2O94868 740 aa8.36□□□□□ -1.07
LIMCH1-207ENST00000508466 ZNF853P0CG23 659 aa8.36□□□□□ -1.07
LIMCH1-207ENST00000508466 KIF4BQ2VIQ3 1234 aa8.36□□□□□ -1.07
LIMCH1-207ENST00000508466 RNF187Q5TA31 235 aaPredicted RBP8.36□□□□□ -1.07
LIMCH1-207ENST00000508466 PPP1R42Q7Z4L9 355 aa8.36□□□□□ -1.07
LIMCH1-207ENST00000508466 CAPZA3Q96KX2 299 aa8.36□□□□□ -1.07
LIMCH1-207ENST00000508466 CDC5LQ99459 802 aaKnown RBP8.36□□□□□ -1.07
LIMCH1-207ENST00000508466 ABCC10Q5T3U5 1492 aa8.36□□□□□ -1.07
LIMCH1-207ENST00000508466 SOWAHDA6NJG2 315 aa8.36□□□□□ -1.07
LIMCH1-207ENST00000508466 TXLNAP40222 546 aa8.36□□□□□ -1.07
LIMCH1-207ENST00000508466 ATP1A2P50993 1020 aa8.36□□□□□ -1.07
LIMCH1-207ENST00000508466 GSCP56915 257 aaPredicted RBP8.36□□□□□ -1.07
LIMCH1-207ENST00000508466 ZNF827Q17R98 1081 aa8.36□□□□□ -1.07
LIMCH1-207ENST00000508466 SULT6B1Q6IMI4 303 aa8.36□□□□□ -1.07
LIMCH1-207ENST00000508466 TRMT44Q8IYL2 757 aaKnown RBP8.36□□□□□ -1.07
LIMCH1-207ENST00000508466 CTCFLQ8NI51 663 aaPredicted RBP8.36□□□□□ -1.07
LIMCH1-207ENST00000508466 CHMP7Q8WUX9 453 aaPredicted RBP8.36□□□□□ -1.07
LIMCH1-207ENST00000508466 GOLGA1Q92805 767 aa8.36□□□□□ -1.07
LIMCH1-207ENST00000508466 CCDC8Q9H0W5 538 aaPredicted RBP8.36□□□□□ -1.07
LIMCH1-207ENST00000508466 KAT14Q9H8E8 782 aa8.36□□□□□ -1.07
LIMCH1-207ENST00000508466 PICK1Q9NRD5 415 aa8.36□□□□□ -1.07
LIMCH1-207ENST00000508466 ANO10Q9NW15 660 aa8.36□□□□□ -1.07
LIMCH1-207ENST00000508466 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP8.36□□□□□ -1.07
LIMCH1-207ENST00000508466 IL16Q14005 1332 aa8.36□□□□□ -1.07
LIMCH1-207ENST00000508466 SRGAP2O75044 1071 aa8.35□□□□□ -1.07
LIMCH1-207ENST00000508466 ZNF569Q5MCW4 686 aa8.35□□□□□ -1.07
LIMCH1-207ENST00000508466 CREB3L3Q68CJ9 461 aa8.35□□□□□ -1.07
LIMCH1-207ENST00000508466 KCTD16Q68DU8 428 aa8.35□□□□□ -1.07
LIMCH1-207ENST00000508466 CCDC129Q6ZRS4 1044 aa8.35□□□□□ -1.07
LIMCH1-207ENST00000508466 IGSF22Q8N9C0 903 aa8.35□□□□□ -1.07
LIMCH1-207ENST00000508466 BCAS4Q8TDM0 211 aa8.35□□□□□ -1.07
LIMCH1-207ENST00000508466 AATKQ6ZMQ8 1374 aa8.35□□□□□ -1.07
LIMCH1-207ENST00000508466 ELP1O95163 1332 aa8.35□□□□□ -1.07
LIMCH1-207ENST00000508466 SOS1Q07889 1333 aaPredicted RBP8.35□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 72.1 ms