RNA–Protein interactions for RNA: ENST00000498808.5

HDAC6-236, Transcript of histone deacetylase 6, humanhuman

TSL 5

Gene HDAC6, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-236ENST00000498808 CDCA5Q96FF9 252 aa20.55■□□□□ 0.88
HDAC6-236ENST00000498808 SF3B3Q15393 1217 aaKnown RBP20.53■□□□□ 0.88
HDAC6-236ENST00000498808 VIL1P09327 827 aaKnown RBP20.52■□□□□ 0.88
HDAC6-236ENST00000498808 PAPPA2Q9BXP8 1791 aa20.51■□□□□ 0.87
HDAC6-236ENST00000498808 REM2Q8IYK8 340 aaPredicted RBP20.51■□□□□ 0.87
HDAC6-236ENST00000498808 TBC1D16Q8TBP0 767 aa20.51■□□□□ 0.87
HDAC6-236ENST00000498808 FAM89AQ96GI7 184 aa20.51■□□□□ 0.87
HDAC6-236ENST00000498808 EYA3Q99504 573 aa20.51■□□□□ 0.87
HDAC6-236ENST00000498808 MAPK8IP3Q9UPT6 1336 aa20.51■□□□□ 0.87
HDAC6-236ENST00000498808 ANGEL2Q5VTE6 544 aaKnown RBP20.5■□□□□ 0.87
HDAC6-236ENST00000498808 ZNF280AP59817 542 aaPredicted RBP20.49■□□□□ 0.87
HDAC6-236ENST00000498808 PKN2Q16513 984 aaKnown RBP20.49■□□□□ 0.87
HDAC6-236ENST00000498808 ZNF296Q8WUU4 475 aaPredicted RBP20.49■□□□□ 0.87
HDAC6-236ENST00000498808 ISCA1Q9BUE6 129 aa20.49■□□□□ 0.87
HDAC6-236ENST00000498808 BABAM1Q9NWV8 329 aa20.49■□□□□ 0.87
HDAC6-236ENST00000498808 ZNF609O15014 1411 aa20.49■□□□□ 0.87
HDAC6-236ENST00000498808 FKBP1BP68106 108 aa20.48■□□□□ 0.87
HDAC6-236ENST00000498808 SCARF1Q14162 830 aa20.48■□□□□ 0.87
HDAC6-236ENST00000498808 KRT24Q2M2I5 525 aa20.48■□□□□ 0.87
HDAC6-236ENST00000498808 HDAC9Q9UKV0 1011 aa20.48■□□□□ 0.87
HDAC6-236ENST00000498808 PSME4Q14997 1843 aa20.48■□□□□ 0.87
HDAC6-236ENST00000498808 TBC1D8O95759 1140 aa20.47■□□□□ 0.87
HDAC6-236ENST00000498808 MOB2Q70IA6 237 aa20.47■□□□□ 0.87
HDAC6-236ENST00000498808 ZC3H12CQ9C0D7 883 aaKnown RBP20.47■□□□□ 0.87
HDAC6-236ENST00000498808 ATP5J2-PTCD1G3V325 749 aa20.46■□□□□ 0.87
HDAC6-236ENST00000498808 RIPK4P57078 832 aa20.46■□□□□ 0.87
HDAC6-236ENST00000498808 RPS8P62241 208 aaKnown RBP20.46■□□□□ 0.87
HDAC6-236ENST00000498808 RTL5Q5HYW3 569 aaPredicted RBP20.46■□□□□ 0.87
HDAC6-236ENST00000498808 PLBD2Q8NHP8 589 aa20.46■□□□□ 0.87
HDAC6-236ENST00000498808 PNNQ9H307 717 aaKnown RBP20.46■□□□□ 0.87
HDAC6-236ENST00000498808 PODXL2Q9NZ53 605 aa20.46■□□□□ 0.87
HDAC6-236ENST00000498808 CHPF2Q9P2E5 772 aa20.46■□□□□ 0.87
HDAC6-236ENST00000498808 RSBN1LQ6PCB5 846 aaPredicted RBP20.45■□□□□ 0.86
HDAC6-236ENST00000498808 AGBL3Q8NEM8 1001 aa20.45■□□□□ 0.86
HDAC6-236ENST00000498808 SCAF8Q9UPN6 1271 aaKnown RBP20.45■□□□□ 0.86
HDAC6-236ENST00000498808 UFL1O94874 794 aa20.44■□□□□ 0.86
HDAC6-236ENST00000498808 GMLQ99445 158 aa20.44■□□□□ 0.86
HDAC6-236ENST00000498808 PITPNM2Q9BZ72 1349 aa20.44■□□□□ 0.86
HDAC6-236ENST00000498808 UBE2Q2LH0YL09 131 aa20.43■□□□□ 0.86
HDAC6-236ENST00000498808 IRS4O14654 1257 aaPredicted RBP20.43■□□□□ 0.86
HDAC6-236ENST00000498808 ANKRD13DQ6ZTN6 518 aa20.43■□□□□ 0.86
HDAC6-236ENST00000498808 MYOZ2Q9NPC6 264 aa20.43■□□□□ 0.86
HDAC6-236ENST00000498808 SEC31BQ9NQW1 1179 aa20.43■□□□□ 0.86
HDAC6-236ENST00000498808 G3V3G9 751 aa20.42■□□□□ 0.86
HDAC6-236ENST00000498808 GPR25O00155 361 aa20.42■□□□□ 0.86
HDAC6-236ENST00000498808 DCAF8Q5TAQ9 597 aa20.42■□□□□ 0.86
HDAC6-236ENST00000498808 FBXO46Q6PJ61 603 aaPredicted RBP20.42■□□□□ 0.86
HDAC6-236ENST00000498808 GGA1Q9UJY5 639 aa20.42■□□□□ 0.86
HDAC6-236ENST00000498808 USP17L8P0C7I0 530 aa20.41■□□□□ 0.86
HDAC6-236ENST00000498808 TM4SF4P48230 202 aa20.41■□□□□ 0.86
HDAC6-236ENST00000498808 NOM1Q5C9Z4 860 aaKnown RBP20.41■□□□□ 0.86
HDAC6-236ENST00000498808 PRAMEF18Q5VWM3 479 aa20.41■□□□□ 0.86
HDAC6-236ENST00000498808 ANKIB1Q9P2G1 1089 aa20.41■□□□□ 0.86
HDAC6-236ENST00000498808 TMPOP42166 694 aaKnown RBP20.4■□□□□ 0.86
HDAC6-236ENST00000498808 TRIM28Q13263 835 aaKnown RBP20.4■□□□□ 0.86
HDAC6-236ENST00000498808 CHL1O00533 1208 aa20.39■□□□□ 0.85
HDAC6-236ENST00000498808 HDGFL1Q5TGJ6 251 aa20.39■□□□□ 0.85
HDAC6-236ENST00000498808 R3HDMLQ9H3Y0 253 aa20.39■□□□□ 0.85
HDAC6-236ENST00000498808 LMOD3Q0VAK6 560 aa20.38■□□□□ 0.85
HDAC6-236ENST00000498808 MKRN3Q13064 507 aaKnown RBP20.38■□□□□ 0.85
HDAC6-236ENST00000498808 NBPF9Q3BBW0 867 aa20.38■□□□□ 0.85
HDAC6-236ENST00000498808 GCC1Q96CN9 775 aa20.38■□□□□ 0.85
HDAC6-236ENST00000498808 CFHR5Q9BXR6 569 aa20.37■□□□□ 0.85
HDAC6-236ENST00000498808 DBF4Q9UBU7 674 aaPredicted RBP20.37■□□□□ 0.85
HDAC6-236ENST00000498808 ZNF646O15015 1829 aaPredicted RBP20.37■□□□□ 0.85
HDAC6-236ENST00000498808 USP17L3A6NCW0 530 aa20.36■□□□□ 0.85
HDAC6-236ENST00000498808 USP17L4A6NCW7 530 aa20.36■□□□□ 0.85
HDAC6-236ENST00000498808 FKTNO75072 461 aa20.36■□□□□ 0.85
HDAC6-236ENST00000498808 TTLL12Q14166 644 aaPredicted RBP20.36■□□□□ 0.85
HDAC6-236ENST00000498808 USP17L1Q7RTZ2 530 aa20.36■□□□□ 0.85
HDAC6-236ENST00000498808 ZBTB38Q8NAP3 1195 aaPredicted RBP20.36■□□□□ 0.85
HDAC6-236ENST00000498808 XDHP47989 1333 aa20.35■□□□□ 0.85
HDAC6-236ENST00000498808 HOXB7P09629 217 aa20.35■□□□□ 0.85
HDAC6-236ENST00000498808 HABP4Q5JVS0 413 aaKnown RBP20.35■□□□□ 0.85
HDAC6-236ENST00000498808 PODNQ7Z5L7 613 aa20.35■□□□□ 0.85
HDAC6-236ENST00000498808 MKI67P46013 3256 aaKnown RBP20.35■□□□□ 0.85
HDAC6-236ENST00000498808 SREBF2Q12772 1141 aa20.34■□□□□ 0.85
HDAC6-236ENST00000498808 HYPKQ9NX55 129 aa20.34■□□□□ 0.85
HDAC6-236ENST00000498808 LAS1LQ9Y4W2 734 aaKnown RBP20.34■□□□□ 0.85
HDAC6-236ENST00000498808 HTTP42858 3142 aa20.33■□□□□ 0.85
HDAC6-236ENST00000498808 WTIPA6NIX2 430 aaPredicted RBP20.33■□□□□ 0.85
HDAC6-236ENST00000498808 WNT10BO00744 389 aa20.33■□□□□ 0.85
HDAC6-236ENST00000498808 PTPN12Q05209 780 aaKnown RBP20.33■□□□□ 0.85
HDAC6-236ENST00000498808 CCDC152Q4G0S7 254 aa20.33■□□□□ 0.85
HDAC6-236ENST00000498808 CCDC85AQ96PX6 553 aaPredicted RBP20.33■□□□□ 0.85
HDAC6-236ENST00000498808 MXD3Q9BW11 206 aa20.33■□□□□ 0.85
HDAC6-236ENST00000498808 ATP2B4P23634 1241 aa20.32■□□□□ 0.84
HDAC6-236ENST00000498808 NEUROD2Q15784 382 aa20.32■□□□□ 0.84
HDAC6-236ENST00000498808 TRIM35Q9UPQ4 493 aa20.32■□□□□ 0.84
HDAC6-236ENST00000498808 POTEFA5A3E0 1075 aa20.31■□□□□ 0.84
HDAC6-236ENST00000498808 NF2P35240 595 aa20.31■□□□□ 0.84
HDAC6-236ENST00000498808 DACT2Q5SW24 774 aa20.31■□□□□ 0.84
HDAC6-236ENST00000498808 JARID2Q92833 1246 aaPredicted RBP20.31■□□□□ 0.84
HDAC6-236ENST00000498808 PDE8AO60658 829 aa20.3■□□□□ 0.84
HDAC6-236ENST00000498808 PCCAP05165 728 aaPredicted RBP20.3■□□□□ 0.84
HDAC6-236ENST00000498808 HSP90B1P14625 803 aaKnown RBP20.3■□□□□ 0.84
HDAC6-236ENST00000498808 PRKG1Q13976 671 aa20.3■□□□□ 0.84
HDAC6-236ENST00000498808 RIC3Q7Z5B4 369 aa20.3■□□□□ 0.84
HDAC6-236ENST00000498808 ANKRD18AQ8IVF6 992 aa20.3■□□□□ 0.84
HDAC6-236ENST00000498808 MED23Q9ULK4 1368 aa20.3■□□□□ 0.84
Retrieved 100 of 20,778 RNA–protein pairs in 40.3 ms