RNA–Protein interactions for RNA: ENST00000490993.5

NPHP3-208, Transcript of nephrocystin 3, humanhuman

TSL 5

Gene NPHP3, Length 5,197 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3-208ENST00000490993 ITGA6P23229 1130 aa8.61□□□□□ -1.03
NPHP3-208ENST00000490993 OLFM4Q6UX06 510 aa8.61□□□□□ -1.03
NPHP3-208ENST00000490993 BRF1Q92994 677 aa8.61□□□□□ -1.03
NPHP3-208ENST00000490993 ZNF335Q9H4Z2 1342 aaPredicted RBP8.6□□□□□ -1.03
NPHP3-208ENST00000490993 PI4K2BQ8TCG2 481 aa8.6□□□□□ -1.03
NPHP3-208ENST00000490993 FAM89AQ96GI7 184 aa8.6□□□□□ -1.03
NPHP3-208ENST00000490993 DSCC1Q9BVC3 393 aa8.6□□□□□ -1.03
NPHP3-208ENST00000490993 KRT23Q9C075 422 aa8.6□□□□□ -1.03
NPHP3-208ENST00000490993 CPDO75976 1380 aa8.6□□□□□ -1.03
NPHP3-208ENST00000490993 MAP3K15Q6ZN16 1313 aa8.6□□□□□ -1.03
NPHP3-208ENST00000490993 MROH5Q6ZUA9 1318 aa8.6□□□□□ -1.03
NPHP3-208ENST00000490993 GOLGA8BA8MQT2 603 aa8.6□□□□□ -1.03
NPHP3-208ENST00000490993 TTLL7Q6ZT98 887 aa8.6□□□□□ -1.03
NPHP3-208ENST00000490993 FERMT3Q86UX7 667 aa8.6□□□□□ -1.03
NPHP3-208ENST00000490993 ACSBG1Q96GR2 724 aa8.6□□□□□ -1.03
NPHP3-208ENST00000490993 FAM227BQ96M60 508 aa8.6□□□□□ -1.03
NPHP3-208ENST00000490993 LLPHQ9BRT6 129 aaKnown RBP8.6□□□□□ -1.03
NPHP3-208ENST00000490993 ABCF2Q9UG63 623 aa8.6□□□□□ -1.03
NPHP3-208ENST00000490993 FMN2Q9NZ56 1722 aa8.6□□□□□ -1.03
NPHP3-208ENST00000490993 PUM3Q15397 648 aaKnown RBP8.6□□□□□ -1.03
NPHP3-208ENST00000490993 CCDC47Q96A33 483 aaKnown RBP8.6□□□□□ -1.03
NPHP3-208ENST00000490993 XAGE2Q96GT9 111 aa8.6□□□□□ -1.03
NPHP3-208ENST00000490993 LARP6Q9BRS8 491 aaKnown RBP8.6□□□□□ -1.03
NPHP3-208ENST00000490993 CAVIN2O95810 425 aa8.6□□□□□ -1.03
NPHP3-208ENST00000490993 CEBPZQ03701 1054 aaKnown RBP8.6□□□□□ -1.03
NPHP3-208ENST00000490993 SPTY2D1Q68D10 685 aaPredicted RBP8.6□□□□□ -1.03
NPHP3-208ENST00000490993 USP48Q86UV5 1035 aa8.6□□□□□ -1.03
NPHP3-208ENST00000490993 TRIM34Q9BYJ4 488 aa8.6□□□□□ -1.03
NPHP3-208ENST00000490993 ZNF287Q9HBT7 754 aa8.6□□□□□ -1.03
NPHP3-208ENST00000490993 THRAP3Q9Y2W1 955 aaKnown RBP8.6□□□□□ -1.03
NPHP3-208ENST00000490993 SLC12A7Q9Y666 1083 aa8.6□□□□□ -1.03
NPHP3-208ENST00000490993 TIMM10P62072 90 aa8.59□□□□□ -1.03
NPHP3-208ENST00000490993 SLC9C2Q5TAH2 1124 aa8.59□□□□□ -1.03
NPHP3-208ENST00000490993 TMTC2Q8N394 836 aa8.59□□□□□ -1.03
NPHP3-208ENST00000490993 NECAB1Q8N987 351 aa8.59□□□□□ -1.03
NPHP3-208ENST00000490993 AK7Q96M32 723 aa8.59□□□□□ -1.03
NPHP3-208ENST00000490993 ZSWIM6Q9HCJ5 1215 aa8.59□□□□□ -1.03
NPHP3-208ENST00000490993 USP42Q9H9J4 1324 aaKnown RBP8.59□□□□□ -1.03
NPHP3-208ENST00000490993 CDK11BP21127 795 aaKnown RBP8.59□□□□□ -1.03
NPHP3-208ENST00000490993 PRIM1P49642 420 aaKnown RBP8.59□□□□□ -1.03
NPHP3-208ENST00000490993 ATL3Q6DD88 541 aa8.59□□□□□ -1.03
NPHP3-208ENST00000490993 CEP131Q9UPN4 1083 aa8.59□□□□□ -1.03
NPHP3-208ENST00000490993 MST1RQ04912 1400 aa8.59□□□□□ -1.03
NPHP3-208ENST00000490993 H7C1W4 665 aa8.59□□□□□ -1.03
NPHP3-208ENST00000490993 BRD1O95696 1058 aa8.59□□□□□ -1.03
NPHP3-208ENST00000490993 APPBP2Q92624 585 aa8.59□□□□□ -1.03
NPHP3-208ENST00000490993 SETDB2Q96T68 719 aa8.59□□□□□ -1.03
NPHP3-208ENST00000490993 NOL7Q9UMY1 257 aaKnown RBP8.59□□□□□ -1.03
NPHP3-208ENST00000490993 ESPNB1AK53 854 aa8.59□□□□□ -1.03
NPHP3-208ENST00000490993 UBAP1LF5GYI3 381 aa8.59□□□□□ -1.03
NPHP3-208ENST00000490993 SYT1P21579 422 aa8.59□□□□□ -1.03
NPHP3-208ENST00000490993 TPD52L1Q16890 204 aaPredicted RBP8.59□□□□□ -1.03
NPHP3-208ENST00000490993 MFSD6Q6ZSS7 791 aa8.59□□□□□ -1.03
NPHP3-208ENST00000490993 FAM13BQ9NYF5 915 aa8.59□□□□□ -1.03
NPHP3-208ENST00000490993 IGKV5-2P06315 115 aa8.58□□□□□ -1.04
NPHP3-208ENST00000490993 IL6STP40189 918 aaPredicted RBP8.58□□□□□ -1.04
NPHP3-208ENST00000490993 GIGYF2Q6Y7W6 1299 aaKnown RBP8.58□□□□□ -1.04
NPHP3-208ENST00000490993 UNC5CLQ8IV45 518 aa8.58□□□□□ -1.04
NPHP3-208ENST00000490993 MAP4K1Q92918 833 aa8.58□□□□□ -1.04
NPHP3-208ENST00000490993 TRIM5Q9C035 493 aa8.58□□□□□ -1.04
NPHP3-208ENST00000490993 IFIT3O14879 490 aaKnown RBP8.58□□□□□ -1.04
NPHP3-208ENST00000490993 XRCC6P12956 609 aaKnown RBP eCLIP8.58□□□□□ -1.04
NPHP3-208ENST00000490993 CTSWP56202 376 aa8.58□□□□□ -1.04
NPHP3-208ENST00000490993 SSRP1Q08945 709 aaKnown RBP8.58□□□□□ -1.04
NPHP3-208ENST00000490993 NBPF5PQ86XG9 351 aaPredicted RBP8.58□□□□□ -1.04
NPHP3-208ENST00000490993 LPIN2Q92539 896 aa8.58□□□□□ -1.04
NPHP3-208ENST00000490993 NLRP3Q96P20 1036 aa8.58□□□□□ -1.04
NPHP3-208ENST00000490993 RFX7Q2KHR2 1363 aa8.58□□□□□ -1.04
NPHP3-208ENST00000490993 GOLGA8AA7E2F4 631 aa8.58□□□□□ -1.04
NPHP3-208ENST00000490993 CCT2P78371 535 aaKnown RBP8.58□□□□□ -1.04
NPHP3-208ENST00000490993 CUL4AQ13619 759 aa8.58□□□□□ -1.04
NPHP3-208ENST00000490993 ZSCAN30Q86W11 494 aa8.58□□□□□ -1.04
NPHP3-208ENST00000490993 ANKRD20A12PQ8NF67 263 aa8.58□□□□□ -1.04
NPHP3-208ENST00000490993 NUP133Q8WUM0 1156 aa8.58□□□□□ -1.04
NPHP3-208ENST00000490993 PALD1Q9ULE6 856 aa8.58□□□□□ -1.04
NPHP3-208ENST00000490993 ERVV-1B6SEH8 477 aa8.58□□□□□ -1.04
NPHP3-208ENST00000490993 IQCA1Q86XH1 822 aa8.58□□□□□ -1.04
NPHP3-208ENST00000490993 SLF2Q8IX21 1173 aa8.58□□□□□ -1.04
NPHP3-208ENST00000490993 ANKRD2Q9GZV1 360 aa8.58□□□□□ -1.04
NPHP3-208ENST00000490993 DACH1Q9UI36 760 aa8.58□□□□□ -1.04
NPHP3-208ENST00000490993 CNPY2Q9Y2B0 182 aa8.58□□□□□ -1.04
NPHP3-208ENST00000490993 XRN1Q8IZH2 1706 aaKnown RBP8.58□□□□□ -1.04
NPHP3-208ENST00000490993 UTYO14607 1347 aa8.58□□□□□ -1.04
NPHP3-208ENST00000490993 TPM1P09493 284 aa8.57□□□□□ -1.04
NPHP3-208ENST00000490993 METAP2P50579 478 aaKnown RBP eCLIP8.57□□□□□ -1.04
NPHP3-208ENST00000490993 PTPN12Q05209 780 aaKnown RBP8.57□□□□□ -1.04
NPHP3-208ENST00000490993 TMEM67Q5HYA8 995 aa8.57□□□□□ -1.04
NPHP3-208ENST00000490993 CEP57L1Q8IYX8 460 aa8.57□□□□□ -1.04
NPHP3-208ENST00000490993 ZNF594Q96JF6 807 aaPredicted RBP8.57□□□□□ -1.04
NPHP3-208ENST00000490993 MARCH6O60337 910 aa8.57□□□□□ -1.04
NPHP3-208ENST00000490993 SASH1O94885 1247 aa8.57□□□□□ -1.04
NPHP3-208ENST00000490993 RFC4P35249 363 aa8.57□□□□□ -1.04
NPHP3-208ENST00000490993 PPIL4Q8WUA2 492 aaKnown RBP eCLIP8.57□□□□□ -1.04
NPHP3-208ENST00000490993 FBXW7Q969H0 707 aa8.57□□□□□ -1.04
NPHP3-208ENST00000490993 KLF18A0A0U1RQI7 1052 aa8.57□□□□□ -1.04
NPHP3-208ENST00000490993 PRC1O43663 620 aa8.57□□□□□ -1.04
NPHP3-208ENST00000490993 LDHCP07864 332 aa8.57□□□□□ -1.04
NPHP3-208ENST00000490993 HAND2P61296 217 aa8.57□□□□□ -1.04
NPHP3-208ENST00000490993 TPTE2Q6XPS3 522 aa8.57□□□□□ -1.04
NPHP3-208ENST00000490993 ORC3Q9UBD5 711 aaPredicted RBP8.57□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 50.6 ms