RNA–Protein interactions for RNA: ENST00000490516.5

EXOSC3-207, Transcript of exosome component 3, humanhuman

TSL 2

Gene EXOSC3, Length 773 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
EXOSC3-207ENST00000490516 CFHR5Q9BXR6 569 aa18.24■□□□□ 0.51
EXOSC3-207ENST00000490516 COL4A1P02462 1669 aa18.24■□□□□ 0.51
EXOSC3-207ENST00000490516 VIL1P09327 827 aaKnown RBP18.23■□□□□ 0.51
EXOSC3-207ENST00000490516 SLC17A8Q8NDX2 589 aa18.23■□□□□ 0.51
EXOSC3-207ENST00000490516 THUMPD2Q9BTF0 503 aaKnown RBP18.23■□□□□ 0.51
EXOSC3-207ENST00000490516 DLG5Q8TDM6 1919 aa18.23■□□□□ 0.51
EXOSC3-207ENST00000490516 PSME4Q14997 1843 aa18.22■□□□□ 0.51
EXOSC3-207ENST00000490516 PER1O15534 1290 aaPredicted RBP18.22■□□□□ 0.51
EXOSC3-207ENST00000490516 GPSM2P81274 684 aa18.22■□□□□ 0.51
EXOSC3-207ENST00000490516 SREBF2Q12772 1141 aa18.22■□□□□ 0.51
EXOSC3-207ENST00000490516 TTLL12Q14166 644 aaPredicted RBP18.22■□□□□ 0.51
EXOSC3-207ENST00000490516 TMC4Q7Z404 712 aa18.22■□□□□ 0.51
EXOSC3-207ENST00000490516 ZNF280AP59817 542 aaPredicted RBP18.21■□□□□ 0.51
EXOSC3-207ENST00000490516 EIF4A1P60842 406 aaKnown RBP18.21■□□□□ 0.51
EXOSC3-207ENST00000490516 ZNF428Q96B54 188 aa18.21■□□□□ 0.51
EXOSC3-207ENST00000490516 HTATSF1O43719 755 aaKnown RBP18.2■□□□□ 0.5
EXOSC3-207ENST00000490516 NLRP10Q86W26 655 aa18.2■□□□□ 0.5
EXOSC3-207ENST00000490516 CELF1Q92879 486 aaKnown RBP18.2■□□□□ 0.5
EXOSC3-207ENST00000490516 OTUD5Q96G74 571 aa18.2■□□□□ 0.5
EXOSC3-207ENST00000490516 LRP10Q7Z4F1 713 aa18.19■□□□□ 0.5
EXOSC3-207ENST00000490516 EYA3Q99504 573 aa18.19■□□□□ 0.5
EXOSC3-207ENST00000490516 TRMT112Q9UI30 125 aaKnown RBP18.19■□□□□ 0.5
EXOSC3-207ENST00000490516 TIMELESSQ9UNS1 1208 aa18.19■□□□□ 0.5
EXOSC3-207ENST00000490516 PTPN22Q9Y2R2 807 aa18.19■□□□□ 0.5
EXOSC3-207ENST00000490516 PITPNM2Q9BZ72 1349 aa18.19■□□□□ 0.5
EXOSC3-207ENST00000490516 H0YGN5 161 aa18.18■□□□□ 0.5
EXOSC3-207ENST00000490516 ANXA1P04083 346 aa18.17■□□□□ 0.5
EXOSC3-207ENST00000490516 PTPN12Q05209 780 aaKnown RBP18.17■□□□□ 0.5
EXOSC3-207ENST00000490516 TBC1D16Q8TBP0 767 aa18.17■□□□□ 0.5
EXOSC3-207ENST00000490516 ARMC5Q96C12 935 aa18.17■□□□□ 0.5
EXOSC3-207ENST00000490516 MYOZ2Q9NPC6 264 aa18.17■□□□□ 0.5
EXOSC3-207ENST00000490516 SH3TC1Q8TE82 1336 aa18.17■□□□□ 0.5
EXOSC3-207ENST00000490516 U2AF1L5P0DN76 240 aaPredicted RBP18.16■□□□□ 0.5
EXOSC3-207ENST00000490516 U2AF1Q01081 240 aaKnown RBP eCLIP18.16■□□□□ 0.5
EXOSC3-207ENST00000490516 PDIA6Q15084 440 aa18.16■□□□□ 0.5
EXOSC3-207ENST00000490516 PROSER3Q2NL68 480 aa18.16■□□□□ 0.5
EXOSC3-207ENST00000490516 RSBN1LQ6PCB5 846 aaPredicted RBP18.16■□□□□ 0.5
EXOSC3-207ENST00000490516 AGBL3Q8NEM8 1001 aa18.16■□□□□ 0.5
EXOSC3-207ENST00000490516 ERBB4Q15303 1308 aa18.16■□□□□ 0.5
EXOSC3-207ENST00000490516 ZNF609O15014 1411 aa18.15■□□□□ 0.5
EXOSC3-207ENST00000490516 ALDH1A1P00352 501 aa18.15■□□□□ 0.5
EXOSC3-207ENST00000490516 TCIRG1Q13488 830 aa18.15■□□□□ 0.5
EXOSC3-207ENST00000490516 PRKG1Q13976 671 aa18.15■□□□□ 0.5
EXOSC3-207ENST00000490516 CHRDL2Q6WN34 429 aa18.15■□□□□ 0.5
EXOSC3-207ENST00000490516 CD99L2Q8TCZ2 262 aa18.15■□□□□ 0.5
EXOSC3-207ENST00000490516 PNISRQ8TF01 805 aaKnown RBP18.15■□□□□ 0.5
EXOSC3-207ENST00000490516 ZC3H12CQ9C0D7 883 aaKnown RBP18.15■□□□□ 0.5
EXOSC3-207ENST00000490516 COL6A3P12111 3177 aa18.14■□□□□ 0.49
EXOSC3-207ENST00000490516 G3V3G9 751 aa18.14■□□□□ 0.49
EXOSC3-207ENST00000490516 USP17L8P0C7I0 530 aa18.14■□□□□ 0.49
EXOSC3-207ENST00000490516 NBPF9Q3BBW0 867 aa18.14■□□□□ 0.49
EXOSC3-207ENST00000490516 DCAF8Q5TAQ9 597 aa18.14■□□□□ 0.49
EXOSC3-207ENST00000490516 SPRYD7Q5W111 196 aa18.14■□□□□ 0.49
EXOSC3-207ENST00000490516 GMLQ99445 158 aa18.14■□□□□ 0.49
EXOSC3-207ENST00000490516 TMEM106CQ9BVX2 250 aa18.14■□□□□ 0.49
EXOSC3-207ENST00000490516 LAMB1P07942 1786 aa18.14■□□□□ 0.49
EXOSC3-207ENST00000490516 A0A0C4DFX4 3053 aa18.14■□□□□ 0.49
EXOSC3-207ENST00000490516 IFNL1Q8IU54 200 aa18.13■□□□□ 0.49
EXOSC3-207ENST00000490516 ERO1AQ96HE7 468 aa18.13■□□□□ 0.49
EXOSC3-207ENST00000490516 CUL9Q8IWT3 2517 aa18.13■□□□□ 0.49
EXOSC3-207ENST00000490516 EIF2S2P20042 333 aaKnown RBP18.12■□□□□ 0.49
EXOSC3-207ENST00000490516 NF2P35240 595 aa18.12■□□□□ 0.49
EXOSC3-207ENST00000490516 CAP1Q01518 475 aa18.12■□□□□ 0.49
EXOSC3-207ENST00000490516 HSP90AB3PQ58FF7 597 aa18.12■□□□□ 0.49
EXOSC3-207ENST00000490516 CFAP53Q96M91 514 aa18.12■□□□□ 0.49
EXOSC3-207ENST00000490516 ZBTB4Q9P1Z0 1013 aaPredicted RBP18.12■□□□□ 0.49
EXOSC3-207ENST00000490516 RBM27Q9P2N5 1060 aaKnown RBP18.12■□□□□ 0.49
EXOSC3-207ENST00000490516 NUDCQ9Y266 331 aa18.12■□□□□ 0.49
EXOSC3-207ENST00000490516 RANBP2P49792 3224 aaKnown RBP18.11■□□□□ 0.49
EXOSC3-207ENST00000490516 IGF2BP3O00425 579 aaKnown RBP eCLIP18.11■□□□□ 0.49
EXOSC3-207ENST00000490516 AIMP1Q12904 312 aaKnown RBP18.11■□□□□ 0.49
EXOSC3-207ENST00000490516 ZNF333Q96JL9 665 aa18.11■□□□□ 0.49
EXOSC3-207ENST00000490516 EFCC1Q9HA90 598 aa18.11■□□□□ 0.49
EXOSC3-207ENST00000490516 FZD1Q9UP38 647 aa18.11■□□□□ 0.49
EXOSC3-207ENST00000490516 UFL1O94874 794 aa18.1■□□□□ 0.49
EXOSC3-207ENST00000490516 SF3B3Q15393 1217 aaKnown RBP18.1■□□□□ 0.49
EXOSC3-207ENST00000490516 LDLRAD1Q5T700 205 aa18.1■□□□□ 0.49
EXOSC3-207ENST00000490516 COPS6Q7L5N1 327 aa18.1■□□□□ 0.49
EXOSC3-207ENST00000490516 ARMC9Q7Z3E5 817 aa18.1■□□□□ 0.49
EXOSC3-207ENST00000490516 NECTIN2Q92692 538 aa18.1■□□□□ 0.49
EXOSC3-207ENST00000490516 ZNF646O15015 1829 aaPredicted RBP18.09■□□□□ 0.49
EXOSC3-207ENST00000490516 MANSC4A6NHS7 340 aaPredicted RBP18.09■□□□□ 0.49
EXOSC3-207ENST00000490516 XAGE3Q8WTP9 111 aa18.09■□□□□ 0.49
EXOSC3-207ENST00000490516 FAM89AQ96GI7 184 aa18.09■□□□□ 0.49
EXOSC3-207ENST00000490516 MYCP01106 439 aaPredicted RBP18.08■□□□□ 0.48
EXOSC3-207ENST00000490516 INHBEP58166 350 aa18.08■□□□□ 0.48
EXOSC3-207ENST00000490516 RPS8P62241 208 aaKnown RBP18.08■□□□□ 0.48
EXOSC3-207ENST00000490516 SLC4A8Q2Y0W8 1093 aa18.08■□□□□ 0.48
EXOSC3-207ENST00000490516 PODXL2Q9NZ53 605 aa18.08■□□□□ 0.48
EXOSC3-207ENST00000490516 ANKIB1Q9P2G1 1089 aa18.08■□□□□ 0.48
EXOSC3-207ENST00000490516 ANGEL1Q9UNK9 670 aaKnown RBP18.08■□□□□ 0.48
EXOSC3-207ENST00000490516 WNT10BO00744 389 aa18.07■□□□□ 0.48
EXOSC3-207ENST00000490516 CRHR2Q13324 411 aa18.07■□□□□ 0.48
EXOSC3-207ENST00000490516 USP17L3A6NCW0 530 aa18.06■□□□□ 0.48
EXOSC3-207ENST00000490516 USP17L4A6NCW7 530 aa18.06■□□□□ 0.48
EXOSC3-207ENST00000490516 RTL5Q5HYW3 569 aaPredicted RBP18.06■□□□□ 0.48
EXOSC3-207ENST00000490516 USP17L1Q7RTZ2 530 aa18.06■□□□□ 0.48
EXOSC3-207ENST00000490516 SLC10A4Q96EP9 437 aa18.06■□□□□ 0.48
EXOSC3-207ENST00000490516 MXD3Q9BW11 206 aa18.06■□□□□ 0.48
EXOSC3-207ENST00000490516 GGA1Q9UJY5 639 aa18.06■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 81.5 ms