RNA–Protein interactions for RNA: ENST00000480525.5

HDAC6-223, Transcript of histone deacetylase 6, humanhuman

TSL 3

Gene HDAC6, Length 412 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-223ENST00000480525 SYNE4Q8N205 404 aa6.36□□□□□ -1.39
HDAC6-223ENST00000480525 KLHL34Q8N239 644 aa6.36□□□□□ -1.39
HDAC6-223ENST00000480525 MPNDQ8N594 471 aa6.36□□□□□ -1.39
HDAC6-223ENST00000480525 SSH3Q8TE77 659 aa6.36□□□□□ -1.39
HDAC6-223ENST00000480525 CELF1Q92879 486 aaKnown RBP6.36□□□□□ -1.39
HDAC6-223ENST00000480525 MPHOSPH8Q99549 860 aa6.36□□□□□ -1.39
HDAC6-223ENST00000480525 BICC1Q9H694 974 aaKnown RBP6.36□□□□□ -1.39
HDAC6-223ENST00000480525 GREM2Q9H772 168 aa6.36□□□□□ -1.39
HDAC6-223ENST00000480525 GPR108Q9NPR9 543 aa6.36□□□□□ -1.39
HDAC6-223ENST00000480525 ZBTB40Q9NUA8 1239 aa6.36□□□□□ -1.39
HDAC6-223ENST00000480525 NOP58Q9Y2X3 529 aaKnown RBP6.36□□□□□ -1.39
HDAC6-223ENST00000480525 KDM2BQ8NHM5 1336 aa6.35□□□□□ -1.39
HDAC6-223ENST00000480525 MYO3BQ8WXR4 1341 aa6.35□□□□□ -1.39
HDAC6-223ENST00000480525 SENP3-EIF4A1A0A087X0R7 540 aa6.35□□□□□ -1.39
HDAC6-223ENST00000480525 FAM177BA6PVY3 158 aa6.35□□□□□ -1.39
HDAC6-223ENST00000480525 C21orf2O43822 256 aa6.35□□□□□ -1.39
HDAC6-223ENST00000480525 RPS12P25398 132 aaKnown RBP6.35□□□□□ -1.39
HDAC6-223ENST00000480525 IL15P40933 162 aaPredicted RBP6.35□□□□□ -1.39
HDAC6-223ENST00000480525 RFX5P48382 616 aaPredicted RBP6.35□□□□□ -1.39
HDAC6-223ENST00000480525 PTPN12Q05209 780 aaKnown RBP6.35□□□□□ -1.39
HDAC6-223ENST00000480525 POLA2Q14181 598 aa6.35□□□□□ -1.39
HDAC6-223ENST00000480525 DPP8Q6V1X1 898 aaPredicted RBP6.35□□□□□ -1.39
HDAC6-223ENST00000480525 GPC2Q8N158 579 aa6.35□□□□□ -1.39
HDAC6-223ENST00000480525 TMEM57Q8N5G2 664 aa6.35□□□□□ -1.39
HDAC6-223ENST00000480525 VGLL2Q8N8G2 317 aa6.35□□□□□ -1.39
HDAC6-223ENST00000480525 TBC1D16Q8TBP0 767 aa6.35□□□□□ -1.39
HDAC6-223ENST00000480525 SUCLG2Q96I99 432 aa6.35□□□□□ -1.39
HDAC6-223ENST00000480525 MEIS3Q99687 375 aa6.35□□□□□ -1.39
HDAC6-223ENST00000480525 MINPP1Q9UNW1 487 aa6.35□□□□□ -1.39
HDAC6-223ENST00000480525 RIPOR2Q9Y4F9 1068 aa6.35□□□□□ -1.39
HDAC6-223ENST00000480525 GLTPD2A6NH11 291 aa6.34□□□□□ -1.39
HDAC6-223ENST00000480525 EYA2O00167 538 aa6.34□□□□□ -1.39
HDAC6-223ENST00000480525 SEMA3EO15041 775 aa6.34□□□□□ -1.39
HDAC6-223ENST00000480525 PDE8BO95263 885 aa6.34□□□□□ -1.39
HDAC6-223ENST00000480525 RLBP1P12271 317 aa6.34□□□□□ -1.39
HDAC6-223ENST00000480525 RRP1P56182 461 aaKnown RBP6.34□□□□□ -1.39
HDAC6-223ENST00000480525 ATP8B2P98198 1209 aa6.34□□□□□ -1.39
HDAC6-223ENST00000480525 HSP90AB4PQ58FF6 505 aa6.34□□□□□ -1.39
HDAC6-223ENST00000480525 EPHA10Q5JZY3 1008 aa6.34□□□□□ -1.39
HDAC6-223ENST00000480525 DPY19L2Q6NUT2 758 aa6.34□□□□□ -1.39
HDAC6-223ENST00000480525 LDHAL6AQ6ZMR3 332 aa6.34□□□□□ -1.39
HDAC6-223ENST00000480525 ARHGAP27Q6ZUM4 889 aa6.34□□□□□ -1.39
HDAC6-223ENST00000480525 JDP2Q8WYK2 163 aa6.34□□□□□ -1.39
HDAC6-223ENST00000480525 FRAT1Q92837 279 aaPredicted RBP6.34□□□□□ -1.39
HDAC6-223ENST00000480525 COA1Q9GZY4 146 aa6.34□□□□□ -1.39
HDAC6-223ENST00000480525 SEC31BQ9NQW1 1179 aa6.34□□□□□ -1.39
HDAC6-223ENST00000480525 GGA1Q9UJY5 639 aa6.34□□□□□ -1.39
HDAC6-223ENST00000480525 ZNRF3Q9ULT6 936 aa6.34□□□□□ -1.39
HDAC6-223ENST00000480525 COL4A5P29400 1685 aa6.33□□□□□ -1.4
HDAC6-223ENST00000480525 AKAP11Q9UKA4 1901 aa6.33□□□□□ -1.4
HDAC6-223ENST00000480525 ZNF804BA4D1E1 1349 aa6.33□□□□□ -1.4
HDAC6-223ENST00000480525 IQCA1LA6NCM1 817 aa6.33□□□□□ -1.4
HDAC6-223ENST00000480525 HMMRO75330 724 aa6.33□□□□□ -1.4
HDAC6-223ENST00000480525 IL1R1P14778 569 aa6.33□□□□□ -1.4
HDAC6-223ENST00000480525 FGFR2P21802 821 aa6.33□□□□□ -1.4
HDAC6-223ENST00000480525 CHRNDQ07001 517 aa6.33□□□□□ -1.4
HDAC6-223ENST00000480525 TNIP1Q15025 636 aa6.33□□□□□ -1.4
HDAC6-223ENST00000480525 PUM3Q15397 648 aaKnown RBP6.33□□□□□ -1.4
HDAC6-223ENST00000480525 WASHC4Q2M389 1173 aa6.33□□□□□ -1.4
HDAC6-223ENST00000480525 C9orf131Q5VYM1 1079 aa6.33□□□□□ -1.4
HDAC6-223ENST00000480525 TICAM2Q86XR7 235 aa6.33□□□□□ -1.4
HDAC6-223ENST00000480525 ERC1Q8IUD2 1116 aa6.33□□□□□ -1.4
HDAC6-223ENST00000480525 CCDC24Q8N4L8 307 aa6.33□□□□□ -1.4
HDAC6-223ENST00000480525 DPF2Q92785 391 aa6.33□□□□□ -1.4
HDAC6-223ENST00000480525 ZNF512BQ96KM6 892 aaPredicted RBP6.33□□□□□ -1.4
HDAC6-223ENST00000480525 ZC3H12CQ9C0D7 883 aaKnown RBP6.33□□□□□ -1.4
HDAC6-223ENST00000480525 SUGT1Q9Y2Z0 365 aa6.33□□□□□ -1.4
HDAC6-223ENST00000480525 LRRFIP2Q9Y608 721 aaKnown RBP6.33□□□□□ -1.4
HDAC6-223ENST00000480525 SRGAP3O43295 1099 aa6.32□□□□□ -1.4
HDAC6-223ENST00000480525 PRELPP51888 382 aa6.32□□□□□ -1.4
HDAC6-223ENST00000480525 GPSM2P81274 684 aa6.32□□□□□ -1.4
HDAC6-223ENST00000480525 TAF7LQ5H9L4 462 aa6.32□□□□□ -1.4
HDAC6-223ENST00000480525 RTL5Q5HYW3 569 aaPredicted RBP6.32□□□□□ -1.4
HDAC6-223ENST00000480525 STRIP1Q5VSL9 837 aa6.32□□□□□ -1.4
HDAC6-223ENST00000480525 CEP85Q6P2H3 762 aa6.32□□□□□ -1.4
HDAC6-223ENST00000480525 ATG9AQ7Z3C6 839 aa6.32□□□□□ -1.4
HDAC6-223ENST00000480525 ITPRIPQ8IWB1 547 aa6.32□□□□□ -1.4
HDAC6-223ENST00000480525 NIM1KQ8IY84 436 aa6.32□□□□□ -1.4
HDAC6-223ENST00000480525 LARGE2Q8N3Y3 721 aa6.32□□□□□ -1.4
HDAC6-223ENST00000480525 AGBL3Q8NEM8 1001 aa6.32□□□□□ -1.4
HDAC6-223ENST00000480525 LPIN2Q92539 896 aa6.32□□□□□ -1.4
HDAC6-223ENST00000480525 MRIQ9BWK5 157 aa6.32□□□□□ -1.4
HDAC6-223ENST00000480525 RNF181Q9P0P0 153 aa6.32□□□□□ -1.4
HDAC6-223ENST00000480525 ANKIB1Q9P2G1 1089 aa6.32□□□□□ -1.4
HDAC6-223ENST00000480525 POLLQ9UGP5 575 aa6.32□□□□□ -1.4
HDAC6-223ENST00000480525 NSFL1CQ9UNZ2 370 aaKnown RBP6.32□□□□□ -1.4
HDAC6-223ENST00000480525 AKAP2Q9Y2D5 859 aa6.32□□□□□ -1.4
HDAC6-223ENST00000480525 DOCK2Q92608 1830 aa6.32□□□□□ -1.4
HDAC6-223ENST00000480525 MAST2Q6P0Q8 1798 aa6.31□□□□□ -1.4
HDAC6-223ENST00000480525 FAM205AQ6ZU69 1335 aa6.31□□□□□ -1.4
HDAC6-223ENST00000480525 SALL1Q9NSC2 1324 aa6.31□□□□□ -1.4
HDAC6-223ENST00000480525 TRPM7Q96QT4 1865 aa6.31□□□□□ -1.4
HDAC6-223ENST00000480525 COL1A1P02452 1464 aaPredicted RBP6.31□□□□□ -1.4
HDAC6-223ENST00000480525 PPIP5K2O43314 1243 aa6.31□□□□□ -1.4
HDAC6-223ENST00000480525 RAB11FIP3O75154 756 aa6.31□□□□□ -1.4
HDAC6-223ENST00000480525 UFL1O94874 794 aa6.31□□□□□ -1.4
HDAC6-223ENST00000480525 SASH1O94885 1247 aa6.31□□□□□ -1.4
HDAC6-223ENST00000480525 VIL1P09327 827 aaKnown RBP6.31□□□□□ -1.4
HDAC6-223ENST00000480525 YY1P25490 414 aa6.31□□□□□ -1.4
HDAC6-223ENST00000480525 EIF6P56537 245 aaKnown RBP6.31□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 50.6 ms