RNA–Protein interactions for RNA: ENST00000474056.5

UPF3A-203, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3A, Length 748 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-203ENST00000474056 UFL1O94874 794 aa22.79■■□□□ 1.24
UPF3A-203ENST00000474056 FAM161AQ3B820 660 aa22.79■■□□□ 1.24
UPF3A-203ENST00000474056 SLC4A10Q6U841 1118 aa22.79■■□□□ 1.24
UPF3A-203ENST00000474056 PNMA8AQ86V59 439 aaPredicted RBP22.79■■□□□ 1.24
UPF3A-203ENST00000474056 TRMT2AQ8IZ69 625 aaKnown RBP22.79■■□□□ 1.24
UPF3A-203ENST00000474056 MIER1Q8N108 512 aa22.79■■□□□ 1.24
UPF3A-203ENST00000474056 DNAJC5GQ8N7S2 189 aa22.79■■□□□ 1.24
UPF3A-203ENST00000474056 GGA1Q9UJY5 639 aa22.79■■□□□ 1.24
UPF3A-203ENST00000474056 SSH1Q8WYL5 1049 aa22.78■■□□□ 1.24
UPF3A-203ENST00000474056 BSDC1Q9NW68 430 aaPredicted RBP22.78■■□□□ 1.24
UPF3A-203ENST00000474056 CLEC11AQ9Y240 323 aa22.78■■□□□ 1.24
UPF3A-203ENST00000474056 ECE2O60344 883 aa22.77■■□□□ 1.24
UPF3A-203ENST00000474056 CSF1RP07333 972 aa22.77■■□□□ 1.24
UPF3A-203ENST00000474056 ITGA6P23229 1130 aa22.77■■□□□ 1.24
UPF3A-203ENST00000474056 GMPSP49915 693 aaPredicted RBP22.77■■□□□ 1.24
UPF3A-203ENST00000474056 DOK7Q18PE1 504 aa22.77■■□□□ 1.24
UPF3A-203ENST00000474056 BCL2L13Q9BXK5 485 aa22.77■■□□□ 1.24
UPF3A-203ENST00000474056 XDHP47989 1333 aa22.77■■□□□ 1.24
UPF3A-203ENST00000474056 SRCIN1Q9C0H9 1055 aa22.76■■□□□ 1.23
UPF3A-203ENST00000474056 GPRC5DQ9NZD1 345 aa22.76■■□□□ 1.23
UPF3A-203ENST00000474056 ALDH1L1O75891 902 aa22.75■■□□□ 1.23
UPF3A-203ENST00000474056 IGHMBP2P38935 993 aaKnown RBP22.75■■□□□ 1.23
UPF3A-203ENST00000474056 TNIP1Q15025 636 aa22.75■■□□□ 1.23
UPF3A-203ENST00000474056 ZC3H12CQ9C0D7 883 aaKnown RBP22.75■■□□□ 1.23
UPF3A-203ENST00000474056 MINPP1Q9UNW1 487 aa22.75■■□□□ 1.23
UPF3A-203ENST00000474056 PASKQ96RG2 1323 aa22.75■■□□□ 1.23
UPF3A-203ENST00000474056 GRM8O00222 908 aa22.74■■□□□ 1.23
UPF3A-203ENST00000474056 PSMD14O00487 310 aa22.74■■□□□ 1.23
UPF3A-203ENST00000474056 FOXO4P98177 505 aa22.74■■□□□ 1.23
UPF3A-203ENST00000474056 MAP1SQ66K74 1059 aaPredicted RBP22.74■■□□□ 1.23
UPF3A-203ENST00000474056 KCNQ5Q9NR82 932 aa22.74■■□□□ 1.23
UPF3A-203ENST00000474056 TRPM7Q96QT4 1865 aa22.73■■□□□ 1.23
UPF3A-203ENST00000474056 WTIPA6NIX2 430 aaPredicted RBP22.73■■□□□ 1.23
UPF3A-203ENST00000474056 ITGBL1O95965 494 aaPredicted RBP22.73■■□□□ 1.23
UPF3A-203ENST00000474056 ATP2B4P23634 1241 aa22.73■■□□□ 1.23
UPF3A-203ENST00000474056 ALDH1L2Q3SY69 923 aa22.73■■□□□ 1.23
UPF3A-203ENST00000474056 EPHA10Q5JZY3 1008 aa22.73■■□□□ 1.23
UPF3A-203ENST00000474056 KLRG1Q96E93 195 aa22.73■■□□□ 1.23
UPF3A-203ENST00000474056 C9orf78Q9NZ63 289 aaPredicted RBP22.73■■□□□ 1.23
UPF3A-203ENST00000474056 ZBTB12Q9Y330 459 aaPredicted RBP22.73■■□□□ 1.23
UPF3A-203ENST00000474056 PTPRCP08575 1304 aa22.73■■□□□ 1.23
UPF3A-203ENST00000474056 ZNF646O15015 1829 aaPredicted RBP22.73■■□□□ 1.23
UPF3A-203ENST00000474056 USP50Q70EL3 339 aaPredicted RBP22.72■■□□□ 1.23
UPF3A-203ENST00000474056 ADARB2Q9NS39 739 aaKnown RBP22.72■■□□□ 1.23
UPF3A-203ENST00000474056 CHMP3Q9Y3E7 222 aa22.72■■□□□ 1.23
UPF3A-203ENST00000474056 POLR2AP24928 1970 aaKnown RBP22.72■■□□□ 1.23
UPF3A-203ENST00000474056 SHTN1A0MZ66 631 aa22.71■■□□□ 1.23
UPF3A-203ENST00000474056 ANKRD18BA2A2Z9 1011 aa22.71■■□□□ 1.23
UPF3A-203ENST00000474056 CNTROBQ8N137 903 aa22.71■■□□□ 1.23
UPF3A-203ENST00000474056 MPHOSPH8Q99549 860 aa22.71■■□□□ 1.23
UPF3A-203ENST00000474056 CCT4P50991 539 aaKnown RBP22.7■■□□□ 1.22
UPF3A-203ENST00000474056 LMBR1LQ6UX01 489 aa22.7■■□□□ 1.22
UPF3A-203ENST00000474056 SMC4Q9NTJ3 1288 aa22.7■■□□□ 1.22
UPF3A-203ENST00000474056 MED23Q9ULK4 1368 aa22.7■■□□□ 1.22
UPF3A-203ENST00000474056 G3V3G9 751 aa22.69■■□□□ 1.22
UPF3A-203ENST00000474056 IFIT5Q13325 482 aaKnown RBP22.69■■□□□ 1.22
UPF3A-203ENST00000474056 DCAF8Q5TAQ9 597 aa22.69■■□□□ 1.22
UPF3A-203ENST00000474056 MICALL2Q8IY33 904 aa22.69■■□□□ 1.22
UPF3A-203ENST00000474056 SUCLG2Q96I99 432 aa22.69■■□□□ 1.22
UPF3A-203ENST00000474056 CNOT7Q9UIV1 285 aaKnown RBP22.69■■□□□ 1.22
UPF3A-203ENST00000474056 CT47B1P0C2W7 299 aaPredicted RBP22.68■■□□□ 1.22
UPF3A-203ENST00000474056 NBPF7P0C2Y1 421 aaPredicted RBP22.68■■□□□ 1.22
UPF3A-203ENST00000474056 TRPM4Q8TD43 1214 aa22.68■■□□□ 1.22
UPF3A-203ENST00000474056 CREBZFQ9NS37 354 aa22.68■■□□□ 1.22
UPF3A-203ENST00000474056 UTYO14607 1347 aa22.67■■□□□ 1.22
UPF3A-203ENST00000474056 CHRNDQ07001 517 aa22.67■■□□□ 1.22
UPF3A-203ENST00000474056 DPF2Q92785 391 aa22.67■■□□□ 1.22
UPF3A-203ENST00000474056 KAZALD1Q96I82 304 aa22.67■■□□□ 1.22
UPF3A-203ENST00000474056 HIRAP54198 1017 aaPredicted RBP22.66■■□□□ 1.22
UPF3A-203ENST00000474056 ZNF594Q96JF6 807 aaPredicted RBP22.66■■□□□ 1.22
UPF3A-203ENST00000474056 LEMD3Q9Y2U8 911 aa22.66■■□□□ 1.22
UPF3A-203ENST00000474056 VIL1P09327 827 aaKnown RBP22.65■■□□□ 1.22
UPF3A-203ENST00000474056 RPS12P25398 132 aaKnown RBP22.65■■□□□ 1.22
UPF3A-203ENST00000474056 FMR1Q06787 632 aaKnown RBP eCLIP22.65■■□□□ 1.22
UPF3A-203ENST00000474056 TXNRD3Q86VQ6 643 aa22.65■■□□□ 1.22
UPF3A-203ENST00000474056 ANKRD2Q9GZV1 360 aa22.65■■□□□ 1.22
UPF3A-203ENST00000474056 ZNF804BA4D1E1 1349 aa22.64■■□□□ 1.22
UPF3A-203ENST00000474056 H7C1D1 291 aa22.64■■□□□ 1.21
UPF3A-203ENST00000474056 KLRK1P26718 216 aa22.64■■□□□ 1.21
UPF3A-203ENST00000474056 CCDC57Q2TAC2 916 aa22.64■■□□□ 1.21
UPF3A-203ENST00000474056 SAMD7Q7Z3H4 446 aa22.64■■□□□ 1.21
UPF3A-203ENST00000474056 JMYQ8N9B5 988 aa22.64■■□□□ 1.21
UPF3A-203ENST00000474056 TMEM88BA6NKF7 163 aa22.63■■□□□ 1.21
UPF3A-203ENST00000474056 PODNQ7Z5L7 613 aa22.63■■□□□ 1.21
UPF3A-203ENST00000474056 NOB1Q9ULX3 412 aaKnown RBP22.63■■□□□ 1.21
UPF3A-203ENST00000474056 ZNF609O15014 1411 aa22.63■■□□□ 1.21
UPF3A-203ENST00000474056 SNAP23O00161 211 aa22.62■■□□□ 1.21
UPF3A-203ENST00000474056 TAF5LO75529 589 aa22.62■■□□□ 1.21
UPF3A-203ENST00000474056 EGFRP00533 1210 aa22.62■■□□□ 1.21
UPF3A-203ENST00000474056 RARSP54136 660 aaKnown RBP22.62■■□□□ 1.21
UPF3A-203ENST00000474056 TAF7LQ5H9L4 462 aa22.62■■□□□ 1.21
UPF3A-203ENST00000474056 HELBQ8NG08 1087 aaPredicted RBP22.62■■□□□ 1.21
UPF3A-203ENST00000474056 BICC1Q9H694 974 aaKnown RBP22.62■■□□□ 1.21
UPF3A-203ENST00000474056 MKRN1Q9UHC7 482 aaKnown RBP22.62■■□□□ 1.21
UPF3A-203ENST00000474056 BRPF1P55201 1214 aaPredicted RBP22.61■■□□□ 1.21
UPF3A-203ENST00000474056 HNRNPUQ00839 825 aaKnown RBP eCLIP22.61■■□□□ 1.21
UPF3A-203ENST00000474056 TBC1D10BQ4KMP7 808 aaPredicted RBP22.61■■□□□ 1.21
UPF3A-203ENST00000474056 RSBN1LQ6PCB5 846 aaPredicted RBP22.61■■□□□ 1.21
UPF3A-203ENST00000474056 USP44Q9H0E7 712 aa22.61■■□□□ 1.21
UPF3A-203ENST00000474056 PGAP2Q9UHJ9 254 aa22.61■■□□□ 1.21
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms