RNA–Protein interactions for RNA: ENST00000473191.1

USP40-212, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 590 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-212ENST00000473191 SCN9AQ15858 1988 aa21.38■■□□□ 1.01
USP40-212ENST00000473191 CHMP4AQ9BY43 222 aa21.38■■□□□ 1.01
USP40-212ENST00000473191 GREM2Q9H772 168 aa21.38■■□□□ 1.01
USP40-212ENST00000473191 H7C1W4 665 aa21.37■■□□□ 1.01
USP40-212ENST00000473191 ECE2O60344 883 aa21.37■■□□□ 1.01
USP40-212ENST00000473191 FKBP5Q13451 457 aaPredicted RBP21.37■■□□□ 1.01
USP40-212ENST00000473191 UBE3BQ7Z3V4 1068 aa21.37■■□□□ 1.01
USP40-212ENST00000473191 BCL2L13Q9BXK5 485 aa21.37■■□□□ 1.01
USP40-212ENST00000473191 PODXL2Q9NZ53 605 aa21.37■■□□□ 1.01
USP40-212ENST00000473191 MYH3P11055 1940 aa21.36■■□□□ 1.01
USP40-212ENST00000473191 F6X3S4 739 aa21.36■■□□□ 1.01
USP40-212ENST00000473191 UFL1O94874 794 aa21.36■■□□□ 1.01
USP40-212ENST00000473191 EGFRP00533 1210 aa21.36■■□□□ 1.01
USP40-212ENST00000473191 VEGFBP49765 207 aa21.36■■□□□ 1.01
USP40-212ENST00000473191 CASP7P55210 303 aa21.36■■□□□ 1.01
USP40-212ENST00000473191 NEXNQ0ZGT2 675 aa21.36■■□□□ 1.01
USP40-212ENST00000473191 GCKRQ14397 625 aa21.36■■□□□ 1.01
USP40-212ENST00000473191 TNIP1Q15025 636 aa21.36■■□□□ 1.01
USP40-212ENST00000473191 DLK2Q6UY11 383 aa21.36■■□□□ 1.01
USP40-212ENST00000473191 ANKIB1Q9P2G1 1089 aa21.36■■□□□ 1.01
USP40-212ENST00000473191 CNOT7Q9UIV1 285 aaKnown RBP21.36■■□□□ 1.01
USP40-212ENST00000473191 CST9Q5W186 159 aa21.35■■□□□ 1.01
USP40-212ENST00000473191 ANKRD18AQ8IVF6 992 aa21.35■■□□□ 1.01
USP40-212ENST00000473191 MICALL2Q8IY33 904 aa21.35■■□□□ 1.01
USP40-212ENST00000473191 DNAAF4Q8WXU2 420 aa21.35■■□□□ 1.01
USP40-212ENST00000473191 SAMD7Q7Z3H4 446 aa21.34■■□□□ 1.01
USP40-212ENST00000473191 GLIS2Q9BZE0 524 aaPredicted RBP21.34■■□□□ 1.01
USP40-212ENST00000473191 GGA1Q9UJY5 639 aa21.34■■□□□ 1.01
USP40-212ENST00000473191 ZNF521Q96K83 1311 aa21.33■■□□□ 1.01
USP40-212ENST00000473191 HSP90B1P14625 803 aaKnown RBP21.33■■□□□ 1.01
USP40-212ENST00000473191 EYA3Q99504 573 aa21.33■■□□□ 1.01
USP40-212ENST00000473191 ZC3H12CQ9C0D7 883 aaKnown RBP21.32■■□□□ 1
USP40-212ENST00000473191 PGAP2Q9UHJ9 254 aa21.32■■□□□ 1
USP40-212ENST00000473191 RASSF10A6NK89 507 aa21.31■■□□□ 1
USP40-212ENST00000473191 FAM161AQ3B820 660 aa21.31■■□□□ 1
USP40-212ENST00000473191 ABT1Q9ULW3 272 aaKnown RBP21.31■■□□□ 1
USP40-212ENST00000473191 MINPP1Q9UNW1 487 aa21.31■■□□□ 1
USP40-212ENST00000473191 TRPM7Q96QT4 1865 aa21.3■■□□□ 1
USP40-212ENST00000473191 CACNA1FO60840 1977 aa21.3■■□□□ 1
USP40-212ENST00000473191 TBC1D10BQ4KMP7 808 aaPredicted RBP21.3■■□□□ 1
USP40-212ENST00000473191 LINS1Q8NG48 757 aa21.3■■□□□ 1
USP40-212ENST00000473191 CDC5LQ99459 802 aaKnown RBP21.3■■□□□ 1
USP40-212ENST00000473191 XDHP47989 1333 aa21.29■■□□□ 1
USP40-212ENST00000473191 DEFB115Q30KQ5 88 aa21.29■■□□□ 1
USP40-212ENST00000473191 BEND3Q5T5X7 828 aa21.29■■□□□ 1
USP40-212ENST00000473191 RBM26Q5T8P6 1007 aaKnown RBP21.29■■□□□ 1
USP40-212ENST00000473191 DPF2Q92785 391 aa21.29■■□□□ 1
USP40-212ENST00000473191 PLA2G12BQ9BX93 195 aa21.29■■□□□ 1
USP40-212ENST00000473191 BSDC1Q9NW68 430 aaPredicted RBP21.29■■□□□ 1
USP40-212ENST00000473191 H7C1D1 291 aa21.28■■□□□ 1
USP40-212ENST00000473191 VIL1P09327 827 aaKnown RBP21.28■■□□□ 1
USP40-212ENST00000473191 ITGA6P23229 1130 aa21.28■■□□□ 1
USP40-212ENST00000473191 MYH16Q9H6N6 1097 aa21.28■■□□□ 1
USP40-212ENST00000473191 ASTN2O75129 1339 aaPredicted RBP21.28■■□□□ 1
USP40-212ENST00000473191 FOXN1O15353 648 aa21.27■■□□□ 1
USP40-212ENST00000473191 CSF1RP07333 972 aa21.27■■□□□ 1
USP40-212ENST00000473191 ATP2B4P23634 1241 aa21.27■■□□□ 1
USP40-212ENST00000473191 KLRK1P26718 216 aa21.27■■□□□ 1
USP40-212ENST00000473191 EPHA10Q5JZY3 1008 aa21.27■■□□□ 1
USP40-212ENST00000473191 TXNRD3Q86VQ6 643 aa21.27■■□□□ 1
USP40-212ENST00000473191 WDR33Q9C0J8 1336 aaKnown RBP21.27■□□□□ 0.99
USP40-212ENST00000473191 CELF2O95319 508 aaKnown RBP21.26■□□□□ 0.99
USP40-212ENST00000473191 FOXO4P98177 505 aa21.26■□□□□ 0.99
USP40-212ENST00000473191 CYP4F22Q6NT55 531 aa21.26■□□□□ 0.99
USP40-212ENST00000473191 USP48Q86UV5 1035 aa21.26■□□□□ 0.99
USP40-212ENST00000473191 MXD3Q9BW11 206 aa21.26■□□□□ 0.99
USP40-212ENST00000473191 ZNF408Q9H9D4 720 aa21.26■□□□□ 0.99
USP40-212ENST00000473191 ZNF646O15015 1829 aaPredicted RBP21.26■□□□□ 0.99
USP40-212ENST00000473191 PSME4Q14997 1843 aa21.26■□□□□ 0.99
USP40-212ENST00000473191 G3V3G9 751 aa21.25■□□□□ 0.99
USP40-212ENST00000473191 SNAP23O00161 211 aa21.25■□□□□ 0.99
USP40-212ENST00000473191 CCT4P50991 539 aaKnown RBP21.25■□□□□ 0.99
USP40-212ENST00000473191 GRM1Q13255 1194 aa21.25■□□□□ 0.99
USP40-212ENST00000473191 DCAF8Q5TAQ9 597 aa21.25■□□□□ 0.99
USP40-212ENST00000473191 ZC3H15Q8WU90 426 aaKnown RBP21.25■□□□□ 0.99
USP40-212ENST00000473191 RPS12P25398 132 aaKnown RBP21.24■□□□□ 0.99
USP40-212ENST00000473191 TLL2Q9Y6L7 1015 aa21.24■□□□□ 0.99
USP40-212ENST00000473191 POLR2AP24928 1970 aaKnown RBP21.23■□□□□ 0.99
USP40-212ENST00000473191 ADM5C9JUS6 153 aa21.23■□□□□ 0.99
USP40-212ENST00000473191 IGHMBP2P38935 993 aaKnown RBP21.23■□□□□ 0.99
USP40-212ENST00000473191 RSBN1LQ6PCB5 846 aaPredicted RBP21.23■□□□□ 0.99
USP40-212ENST00000473191 PAXIP1Q6ZW49 1069 aaPredicted RBP21.23■□□□□ 0.99
USP40-212ENST00000473191 MED23Q9ULK4 1368 aa21.23■□□□□ 0.99
USP40-212ENST00000473191 KIF4BQ2VIQ3 1234 aa21.22■□□□□ 0.99
USP40-212ENST00000473191 SLC4A10Q6U841 1118 aa21.22■□□□□ 0.99
USP40-212ENST00000473191 CDC37L1Q7L3B6 337 aa21.22■□□□□ 0.99
USP40-212ENST00000473191 SAPCD2Q86UD0 394 aa21.22■□□□□ 0.99
USP40-212ENST00000473191 CDCA7LQ96GN5 454 aa21.22■□□□□ 0.99
USP40-212ENST00000473191 CAPNS2Q96L46 248 aa21.22■□□□□ 0.99
USP40-212ENST00000473191 GMLQ99445 158 aa21.22■□□□□ 0.99
USP40-212ENST00000473191 WBP1LQ9NX94 342 aa21.22■□□□□ 0.99
USP40-212ENST00000473191 A0A1B0GUL6 1792 aa21.21■□□□□ 0.99
USP40-212ENST00000473191 AOC2O75106 756 aa21.21■□□□□ 0.99
USP40-212ENST00000473191 CHRNDQ07001 517 aa21.21■□□□□ 0.99
USP40-212ENST00000473191 SCAF8Q9UPN6 1271 aaKnown RBP21.21■□□□□ 0.99
USP40-212ENST00000473191 THSD7BQ9C0I4 1608 aa21.2■□□□□ 0.98
USP40-212ENST00000473191 TAF5LO75529 589 aa21.2■□□□□ 0.98
USP40-212ENST00000473191 MRPL50Q8N5N7 158 aaKnown RBP21.2■□□□□ 0.98
USP40-212ENST00000473191 HELBQ8NG08 1087 aaPredicted RBP21.2■□□□□ 0.98
USP40-212ENST00000473191 ZNF594Q96JF6 807 aaPredicted RBP21.2■□□□□ 0.98
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms