RNA–Protein interactions for RNA: ENST00000471834.1

SYNE1-220, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 7,229 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-220ENST00000471834 KRT85P78386 507 aa6.3□□□□□ -1.4
SYNE1-220ENST00000471834 LMNB2Q03252 620 aa6.3□□□□□ -1.4
SYNE1-220ENST00000471834 SUGP1Q8IWZ8 645 aaKnown RBP6.3□□□□□ -1.4
SYNE1-220ENST00000471834 XAGE2Q96GT9 111 aa6.3□□□□□ -1.4
SYNE1-220ENST00000471834 GEMIN8Q9NWZ8 242 aaKnown RBP6.3□□□□□ -1.4
SYNE1-220ENST00000471834 SIPA1L3O60292 1781 aaPredicted RBP6.3□□□□□ -1.4
SYNE1-220ENST00000471834 IRX5P78411 483 aaPredicted RBP6.29□□□□□ -1.4
SYNE1-220ENST00000471834 FAM160A1Q05DH4 1040 aa6.29□□□□□ -1.4
SYNE1-220ENST00000471834 WDR93Q6P2C0 686 aa6.29□□□□□ -1.4
SYNE1-220ENST00000471834 CCDC186Q7Z3E2 898 aa6.29□□□□□ -1.4
SYNE1-220ENST00000471834 MPHOSPH8Q99549 860 aa6.29□□□□□ -1.4
SYNE1-220ENST00000471834 NOP2P46087 812 aaKnown RBP6.29□□□□□ -1.4
SYNE1-220ENST00000471834 TUBB2AQ13885 445 aa6.29□□□□□ -1.4
SYNE1-220ENST00000471834 ME3Q16798 604 aa6.29□□□□□ -1.4
SYNE1-220ENST00000471834 MTHFSDQ2M296 383 aaKnown RBP6.29□□□□□ -1.4
SYNE1-220ENST00000471834 SUGP2Q8IX01 1082 aaKnown RBP eCLIP6.29□□□□□ -1.4
SYNE1-220ENST00000471834 LINS1Q8NG48 757 aa6.29□□□□□ -1.4
SYNE1-220ENST00000471834 TUBB2BQ9BVA1 445 aa6.29□□□□□ -1.4
SYNE1-220ENST00000471834 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP6.29□□□□□ -1.4
SYNE1-220ENST00000471834 EIF4A1P60842 406 aaKnown RBP6.29□□□□□ -1.4
SYNE1-220ENST00000471834 ADCK5Q3MIX3 580 aa6.29□□□□□ -1.4
SYNE1-220ENST00000471834 MED15Q96RN5 788 aa6.29□□□□□ -1.4
SYNE1-220ENST00000471834 LIG1P18858 919 aa6.29□□□□□ -1.4
SYNE1-220ENST00000471834 ANKRD1Q15327 319 aa6.29□□□□□ -1.4
SYNE1-220ENST00000471834 CTR9Q6PD62 1173 aa6.29□□□□□ -1.4
SYNE1-220ENST00000471834 TPCN1Q9ULQ1 816 aa6.29□□□□□ -1.4
SYNE1-220ENST00000471834 EFCAB8A8MWE9 144 aa6.29□□□□□ -1.4
SYNE1-220ENST00000471834 FOXP2O15409 715 aa6.29□□□□□ -1.4
SYNE1-220ENST00000471834 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP6.29□□□□□ -1.4
SYNE1-220ENST00000471834 HIP1O00291 1037 aa6.29□□□□□ -1.4
SYNE1-220ENST00000471834 GOLIM4O00461 696 aa6.29□□□□□ -1.4
SYNE1-220ENST00000471834 ATP5JP18859 108 aa6.29□□□□□ -1.4
SYNE1-220ENST00000471834 AMPD2Q01433 879 aa6.29□□□□□ -1.4
SYNE1-220ENST00000471834 FOXR2Q6PJQ5 311 aa6.29□□□□□ -1.4
SYNE1-220ENST00000471834 ZNF572Q7Z3I7 529 aaPredicted RBP6.29□□□□□ -1.4
SYNE1-220ENST00000471834 CALCOCO1Q9P1Z2 691 aa6.29□□□□□ -1.4
SYNE1-220ENST00000471834 DNAI1Q9UI46 699 aa6.29□□□□□ -1.4
SYNE1-220ENST00000471834 PARP4Q9UKK3 1724 aaKnown RBP6.28□□□□□ -1.4
SYNE1-220ENST00000471834 CCDC66A2RUB6 948 aa6.28□□□□□ -1.4
SYNE1-220ENST00000471834 IGSF3O75054 1194 aa6.28□□□□□ -1.4
SYNE1-220ENST00000471834 FDPSP14324 419 aaKnown RBP6.28□□□□□ -1.4
SYNE1-220ENST00000471834 SLC4A10Q6U841 1118 aa6.28□□□□□ -1.4
SYNE1-220ENST00000471834 NOC3LQ8WTT2 800 aaKnown RBP6.28□□□□□ -1.4
SYNE1-220ENST00000471834 RABGGTAQ92696 567 aa6.28□□□□□ -1.4
SYNE1-220ENST00000471834 BMS1Q14692 1282 aaKnown RBP6.28□□□□□ -1.4
SYNE1-220ENST00000471834 SASH1O94885 1247 aa6.28□□□□□ -1.4
SYNE1-220ENST00000471834 SARSP49591 514 aaKnown RBP6.28□□□□□ -1.4
SYNE1-220ENST00000471834 GGA2Q9UJY4 613 aa6.28□□□□□ -1.4
SYNE1-220ENST00000471834 CNPY2Q9Y2B0 182 aa6.28□□□□□ -1.4
SYNE1-220ENST00000471834 ZEB2O60315 1214 aa6.28□□□□□ -1.4
SYNE1-220ENST00000471834 KRT32Q14532 448 aa6.28□□□□□ -1.4
SYNE1-220ENST00000471834 FOXD4L6Q3SYB3 417 aaPredicted RBP6.28□□□□□ -1.4
SYNE1-220ENST00000471834 FOXD4L3Q6VB84 417 aaPredicted RBP6.28□□□□□ -1.4
SYNE1-220ENST00000471834 EYA1Q99502 592 aa6.28□□□□□ -1.4
SYNE1-220ENST00000471834 UPF3BQ9BZI7 483 aaKnown RBP6.28□□□□□ -1.4
SYNE1-220ENST00000471834 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP6.28□□□□□ -1.4
SYNE1-220ENST00000471834 ZNF165P49910 485 aa6.28□□□□□ -1.4
SYNE1-220ENST00000471834 PDIA6Q15084 440 aa6.28□□□□□ -1.4
SYNE1-220ENST00000471834 CHMP4CQ96CF2 233 aa6.28□□□□□ -1.4
SYNE1-220ENST00000471834 ZNF274Q96GC6 653 aaPredicted RBP6.28□□□□□ -1.4
SYNE1-220ENST00000471834 TACO1Q9BSH4 297 aaKnown RBP6.28□□□□□ -1.4
SYNE1-220ENST00000471834 ADALQ6DHV7 355 aa6.28□□□□□ -1.4
SYNE1-220ENST00000471834 SH3RF1Q7Z6J0 888 aa6.28□□□□□ -1.4
SYNE1-220ENST00000471834 CICQ96RK0 1608 aaPredicted RBP6.28□□□□□ -1.4
SYNE1-220ENST00000471834 NSUN7Q8NE18 718 aaKnown RBP6.27□□□□□ -1.41
SYNE1-220ENST00000471834 EVI5LQ96CN4 794 aa6.27□□□□□ -1.41
SYNE1-220ENST00000471834 INTS13Q9NVM9 706 aa6.27□□□□□ -1.41
SYNE1-220ENST00000471834 CPDO75976 1380 aa6.27□□□□□ -1.41
SYNE1-220ENST00000471834 FAM83GA6ND36 823 aa6.27□□□□□ -1.41
SYNE1-220ENST00000471834 KIFC2Q96AC6 838 aa6.27□□□□□ -1.41
SYNE1-220ENST00000471834 NUTM2FA1L443 756 aa6.27□□□□□ -1.41
SYNE1-220ENST00000471834 TSC1Q92574 1164 aa6.27□□□□□ -1.41
SYNE1-220ENST00000471834 NUP62CLQ9H1M0 184 aa6.27□□□□□ -1.41
SYNE1-220ENST00000471834 CC2D1AQ6P1N0 951 aaPredicted RBP6.27□□□□□ -1.41
SYNE1-220ENST00000471834 CCDC112Q8NEF3 446 aa6.27□□□□□ -1.41
SYNE1-220ENST00000471834 C1orf115Q9H7X2 142 aa6.27□□□□□ -1.41
SYNE1-220ENST00000471834 PRPF6O94906 941 aaKnown RBP6.27□□□□□ -1.41
SYNE1-220ENST00000471834 CTDNEP1O95476 244 aa6.27□□□□□ -1.41
SYNE1-220ENST00000471834 PTPAQ15257 358 aa6.27□□□□□ -1.41
SYNE1-220ENST00000471834 JAKMIP3Q5VZ66 844 aa6.27□□□□□ -1.41
SYNE1-220ENST00000471834 DHX40Q8IX18 779 aaKnown RBP6.27□□□□□ -1.41
SYNE1-220ENST00000471834 LTV1Q96GA3 475 aaPredicted RBP6.27□□□□□ -1.41
SYNE1-220ENST00000471834 BRMS1Q9HCU9 246 aa6.27□□□□□ -1.41
SYNE1-220ENST00000471834 LRP6O75581 1613 aa6.27□□□□□ -1.41
SYNE1-220ENST00000471834 FMN2Q9NZ56 1722 aa6.26□□□□□ -1.41
SYNE1-220ENST00000471834 C21orf2O43822 256 aa6.26□□□□□ -1.41
SYNE1-220ENST00000471834 LRRFIP1Q32MZ4 808 aaKnown RBP6.26□□□□□ -1.41
SYNE1-220ENST00000471834 FAM177A1Q8N128 213 aaPredicted RBP6.26□□□□□ -1.41
SYNE1-220ENST00000471834 LINC00301Q8NCQ3 95 aa6.26□□□□□ -1.41
SYNE1-220ENST00000471834 SLC4A2P04920 1241 aa6.26□□□□□ -1.41
SYNE1-220ENST00000471834 CCDC158Q5M9N0 1113 aa6.26□□□□□ -1.41
SYNE1-220ENST00000471834 DACT1Q9NYF0 836 aa6.26□□□□□ -1.41
SYNE1-220ENST00000471834 ORC3Q9UBD5 711 aaPredicted RBP6.26□□□□□ -1.41
SYNE1-220ENST00000471834 STX10O60499 249 aa6.26□□□□□ -1.41
SYNE1-220ENST00000471834 PTGS1P23219 599 aa6.26□□□□□ -1.41
SYNE1-220ENST00000471834 CLCN6P51797 869 aa6.26□□□□□ -1.41
SYNE1-220ENST00000471834 PTH1RQ03431 593 aa6.26□□□□□ -1.41
SYNE1-220ENST00000471834 LRMPQ12912 555 aa6.26□□□□□ -1.41
SYNE1-220ENST00000471834 TRIM28Q13263 835 aaKnown RBP6.26□□□□□ -1.41
SYNE1-220ENST00000471834 BEND6Q5SZJ8 279 aaPredicted RBP6.26□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 95.3 ms