RNA–Protein interactions for RNA: ENST00000470531.5

CHD3-208, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 2

Gene CHD3, Length 3,744 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-208ENST00000470531 UVSSAQ2YD98 709 aa12.46□□□□□ -0.42
CHD3-208ENST00000470531 TEX2Q8IWB9 1127 aa12.46□□□□□ -0.42
CHD3-208ENST00000470531 CCDC34Q96HJ3 373 aa12.46□□□□□ -0.42
CHD3-208ENST00000470531 ZFYVE9O95405 1425 aa12.46□□□□□ -0.42
CHD3-208ENST00000470531 COBLO75128 1261 aa12.45□□□□□ -0.42
CHD3-208ENST00000470531 STX17P56962 302 aa12.45□□□□□ -0.42
CHD3-208ENST00000470531 FAM193AP78312 1265 aa12.45□□□□□ -0.42
CHD3-208ENST00000470531 BEND3Q5T5X7 828 aa12.45□□□□□ -0.42
CHD3-208ENST00000470531 EDC4Q6P2E9 1401 aaKnown RBP12.45□□□□□ -0.42
CHD3-208ENST00000470531 CACTINQ8WUQ7 758 aaKnown RBP12.45□□□□□ -0.42
CHD3-208ENST00000470531 SNW1Q13573 536 aaKnown RBP12.45□□□□□ -0.42
CHD3-208ENST00000470531 METTL24Q5JXM2 366 aa12.45□□□□□ -0.42
CHD3-208ENST00000470531 HINFPQ9BQA5 517 aa12.45□□□□□ -0.42
CHD3-208ENST00000470531 MAP3K5Q99683 1374 aa12.45□□□□□ -0.42
CHD3-208ENST00000470531 RPAP1Q9BWH6 1393 aaPredicted RBP12.45□□□□□ -0.42
CHD3-208ENST00000470531 MROH1Q8NDA8 1641 aa12.45□□□□□ -0.42
CHD3-208ENST00000470531 CD163L1Q9NR16 1453 aa12.45□□□□□ -0.42
CHD3-208ENST00000470531 SETBP1Q9Y6X0 1596 aa12.45□□□□□ -0.42
CHD3-208ENST00000470531 A1BGP04217 495 aa12.45□□□□□ -0.42
CHD3-208ENST00000470531 TPM3P06753 285 aa12.45□□□□□ -0.42
CHD3-208ENST00000470531 RPS6KB1P23443 525 aa12.45□□□□□ -0.42
CHD3-208ENST00000470531 KARSQ15046 597 aaKnown RBP12.45□□□□□ -0.42
CHD3-208ENST00000470531 USP28Q96RU2 1077 aa12.45□□□□□ -0.42
CHD3-208ENST00000470531 ANO10Q9NW15 660 aa12.45□□□□□ -0.42
CHD3-208ENST00000470531 DEPDC5O75140 1603 aa12.44□□□□□ -0.42
CHD3-208ENST00000470531 CHD1O14646 1710 aa12.44□□□□□ -0.42
CHD3-208ENST00000470531 DNA2P51530 1060 aa12.44□□□□□ -0.42
CHD3-208ENST00000470531 PI16Q6UXB8 463 aa12.44□□□□□ -0.42
CHD3-208ENST00000470531 PHKBQ93100 1093 aa12.44□□□□□ -0.42
CHD3-208ENST00000470531 ZNF496Q96IT1 587 aaPredicted RBP12.44□□□□□ -0.42
CHD3-208ENST00000470531 ZNF215Q9UL58 517 aaPredicted RBP12.44□□□□□ -0.42
CHD3-208ENST00000470531 NPHP3Q7Z494 1330 aa12.44□□□□□ -0.42
CHD3-208ENST00000470531 FAM170AA1A519 330 aa12.44□□□□□ -0.42
CHD3-208ENST00000470531 GCP02774 474 aa12.44□□□□□ -0.42
CHD3-208ENST00000470531 SAMD1Q6SPF0 538 aaPredicted RBP12.44□□□□□ -0.42
CHD3-208ENST00000470531 C11orf57Q6ZUT1 292 aaPredicted RBP12.44□□□□□ -0.42
CHD3-208ENST00000470531 LINS1Q8NG48 757 aa12.44□□□□□ -0.42
CHD3-208ENST00000470531 MRVI1Q9Y6F6 885 aa12.44□□□□□ -0.42
CHD3-208ENST00000470531 ROBO2Q9HCK4 1378 aa12.44□□□□□ -0.42
CHD3-208ENST00000470531 FAM89AQ96GI7 184 aa12.44□□□□□ -0.42
CHD3-208ENST00000470531 U3KPZ7 1027 aaPredicted RBP12.44□□□□□ -0.42
CHD3-208ENST00000470531 ARHGAP31Q2M1Z3 1444 aa12.43□□□□□ -0.42
CHD3-208ENST00000470531 ZC3H13Q5T200 1668 aaKnown RBP12.43□□□□□ -0.42
CHD3-208ENST00000470531 PHACTR2O75167 634 aa12.43□□□□□ -0.42
CHD3-208ENST00000470531 AFMP43652 599 aa12.43□□□□□ -0.42
CHD3-208ENST00000470531 ZNF75DP51815 510 aa12.43□□□□□ -0.42
CHD3-208ENST00000470531 KRT32Q14532 448 aa12.43□□□□□ -0.42
CHD3-208ENST00000470531 FKBP15Q5T1M5 1219 aa12.43□□□□□ -0.42
CHD3-208ENST00000470531 BICDL1Q6ZP65 573 aa12.43□□□□□ -0.42
CHD3-208ENST00000470531 STAMQ92783 540 aa12.43□□□□□ -0.42
CHD3-208ENST00000470531 EEF2KMTQ96G04 330 aa12.43□□□□□ -0.42
CHD3-208ENST00000470531 JAG2Q9Y219 1238 aa12.43□□□□□ -0.42
CHD3-208ENST00000470531 ABCC3O15438 1527 aa12.43□□□□□ -0.42
CHD3-208ENST00000470531 A0A0G2JLW4 131 aa12.43□□□□□ -0.42
CHD3-208ENST00000470531 ATF3P18847 181 aa12.43□□□□□ -0.42
CHD3-208ENST00000470531 STX1AQ16623 288 aa12.43□□□□□ -0.42
CHD3-208ENST00000470531 MCMDC2Q4G0Z9 681 aa12.43□□□□□ -0.42
CHD3-208ENST00000470531 EPHA10Q5JZY3 1008 aa12.43□□□□□ -0.42
CHD3-208ENST00000470531 UTP14CQ5TAP6 766 aaKnown RBP12.43□□□□□ -0.42
CHD3-208ENST00000470531 ZSCAN25Q6NSZ9 544 aa12.43□□□□□ -0.42
CHD3-208ENST00000470531 VPS37DQ86XT2 251 aa12.43□□□□□ -0.42
CHD3-208ENST00000470531 PRDM11Q9NQV5 511 aa12.43□□□□□ -0.42
CHD3-208ENST00000470531 SAFBQ15424 915 aaKnown RBP eCLIP12.42□□□□□ -0.42
CHD3-208ENST00000470531 IMMTQ16891 758 aaKnown RBP12.42□□□□□ -0.42
CHD3-208ENST00000470531 UTP14AQ9BVJ6 771 aaKnown RBP12.42□□□□□ -0.42
CHD3-208ENST00000470531 TMEM51Q9NW97 253 aa12.42□□□□□ -0.42
CHD3-208ENST00000470531 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP12.42□□□□□ -0.42
CHD3-208ENST00000470531 VWDEQ8N2E2 1590 aa12.42□□□□□ -0.42
CHD3-208ENST00000470531 IFT172Q9UG01 1749 aa12.42□□□□□ -0.42
CHD3-208ENST00000470531 RGS12O14924 1447 aa12.42□□□□□ -0.42
CHD3-208ENST00000470531 USP27XA6NNY8 438 aa12.42□□□□□ -0.42
CHD3-208ENST00000470531 ZNF213O14771 459 aa12.42□□□□□ -0.42
CHD3-208ENST00000470531 SASH1O94885 1247 aa12.42□□□□□ -0.42
CHD3-208ENST00000470531 USP32Q8NFA0 1604 aa12.42□□□□□ -0.42
CHD3-208ENST00000470531 RNMTO43148 476 aaKnown RBP12.42□□□□□ -0.42
CHD3-208ENST00000470531 IBSPP21815 317 aaPredicted RBP12.42□□□□□ -0.42
CHD3-208ENST00000470531 GNG11P61952 73 aa12.42□□□□□ -0.42
CHD3-208ENST00000470531 NCBP1Q09161 790 aaKnown RBP12.42□□□□□ -0.42
CHD3-208ENST00000470531 ERCC6LQ2NKX8 1250 aa12.42□□□□□ -0.42
CHD3-208ENST00000470531 SLC26A6Q9BXS9 759 aa12.42□□□□□ -0.42
CHD3-208ENST00000470531 SPTLC3Q9NUV7 552 aa12.42□□□□□ -0.42
CHD3-208ENST00000470531 ERCC3P19447 782 aa12.41□□□□□ -0.42
CHD3-208ENST00000470531 ZNF827Q17R98 1081 aa12.41□□□□□ -0.42
CHD3-208ENST00000470531 TAF3Q5VWG9 929 aa12.41□□□□□ -0.42
CHD3-208ENST00000470531 AIFM3Q96NN9 605 aa12.41□□□□□ -0.42
CHD3-208ENST00000470531 GTPBP4Q9BZE4 634 aaKnown RBP12.41□□□□□ -0.42
CHD3-208ENST00000470531 OSBPL3Q9H4L5 887 aa12.41□□□□□ -0.42
CHD3-208ENST00000470531 INO80Q9ULG1 1556 aaPredicted RBP12.41□□□□□ -0.42
CHD3-208ENST00000470531 ARHGEF28Q8N1W1 1705 aaKnown RBP12.41□□□□□ -0.42
CHD3-208ENST00000470531 TDO2P48775 406 aa12.41□□□□□ -0.42
CHD3-208ENST00000470531 CNNM3Q8NE01 707 aa12.41□□□□□ -0.42
CHD3-208ENST00000470531 PAG1Q9NWQ8 432 aa12.41□□□□□ -0.42
CHD3-208ENST00000470531 DHX16O60231 1041 aaKnown RBP12.41□□□□□ -0.42
CHD3-208ENST00000470531 TOP1P11387 765 aaKnown RBP12.41□□□□□ -0.42
CHD3-208ENST00000470531 LONRF3Q496Y0 759 aa12.41□□□□□ -0.42
CHD3-208ENST00000470531 ARHGAP29Q52LW3 1261 aa12.41□□□□□ -0.42
CHD3-208ENST00000470531 LDHAL6AQ6ZMR3 332 aa12.41□□□□□ -0.42
CHD3-208ENST00000470531 TRMT44Q8IYL2 757 aaKnown RBP12.41□□□□□ -0.42
CHD3-208ENST00000470531 EPC1Q9H2F5 836 aa12.41□□□□□ -0.42
CHD3-208ENST00000470531 LZTFL1Q9NQ48 299 aa12.41□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 18 ms