RNA–Protein interactions for RNA: ENST00000469356.3

SREBF1-208, Transcript of sterol regulatory element binding transcription factor 1, human

TSL 3

Gene SREBF1, Length 1,323 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SREBF1-208	ENST00000469356	G3BP1	Q13283	466 aa	Known RBP eCLIP	28.48	■■■□□ 2.15
SREBF1-208	ENST00000469356	SUPT20H	Q8NEM7	779 aa		28.48	■■■□□ 2.15
SREBF1-208	ENST00000469356	ANKIB1	Q9P2G1	1089 aa		28.48	■■■□□ 2.15
SREBF1-208	ENST00000469356	MROH5	Q6ZUA9	1318 aa		28.48	■■■□□ 2.15
SREBF1-208	ENST00000469356	HSP90AB4P	Q58FF6	505 aa		28.47	■■■□□ 2.15
SREBF1-208	ENST00000469356	DPP8	Q6V1X1	898 aa	Predicted RBP	28.47	■■■□□ 2.15
SREBF1-208	ENST00000469356	ARHGAP27	Q6ZUM4	889 aa		28.47	■■■□□ 2.15
SREBF1-208	ENST00000469356	MINPP1	Q9UNW1	487 aa		28.47	■■■□□ 2.15
SREBF1-208	ENST00000469356	YBX3	P16989	372 aa	Known RBP eCLIP	28.46	■■■□□ 2.15
SREBF1-208	ENST00000469356	IL15	P40933	162 aa	Predicted RBP	28.46	■■■□□ 2.15
SREBF1-208	ENST00000469356	XDH	P47989	1333 aa		28.46	■■■□□ 2.15
SREBF1-208	ENST00000469356	NSFL1C	Q9UNZ2	370 aa	Known RBP	28.46	■■■□□ 2.15
SREBF1-208	ENST00000469356	KLHDC4	Q8TBB5	520 aa		28.45	■■■□□ 2.15
SREBF1-208	ENST00000469356	PODXL2	Q9NZ53	605 aa		28.45	■■■□□ 2.15
SREBF1-208	ENST00000469356	SURF6	O75683	361 aa	Known RBP	28.44	■■■□□ 2.14
SREBF1-208	ENST00000469356	ATP2B4	P23634	1241 aa		28.44	■■■□□ 2.14
SREBF1-208	ENST00000469356	CHRND	Q07001	517 aa		28.44	■■■□□ 2.14
SREBF1-208	ENST00000469356	OS9	Q13438	667 aa	Predicted RBP	28.44	■■■□□ 2.14
SREBF1-208	ENST00000469356	METTL24	Q5JXM2	366 aa		28.44	■■■□□ 2.14
SREBF1-208	ENST00000469356	SIL1	Q9H173	461 aa		28.44	■■■□□ 2.14
SREBF1-208	ENST00000469356	PA2G4	Q9UQ80	394 aa	Known RBP	28.44	■■■□□ 2.14
SREBF1-208	ENST00000469356	RIPOR2	Q9Y4F9	1068 aa		28.44	■■■□□ 2.14
SREBF1-208	ENST00000469356	LRRC37A	A6NMS7	1700 aa		28.44	■■■□□ 2.14
SREBF1-208	ENST00000469356	PSMD1	Q99460	953 aa		28.43	■■■□□ 2.14
SREBF1-208	ENST00000469356	TAOK3	Q9H2K8	898 aa		28.43	■■■□□ 2.14
SREBF1-208	ENST00000469356	GGA1	Q9UJY5	639 aa		28.43	■■■□□ 2.14
SREBF1-208	ENST00000469356	LEMD3	Q9Y2U8	911 aa		28.43	■■■□□ 2.14
SREBF1-208	ENST00000469356	KCNJ4	P48050	445 aa		28.43	■■■□□ 2.14
SREBF1-208	ENST00000469356	FKBP4	Q02790	459 aa	Known RBP eCLIP	28.43	■■■□□ 2.14
SREBF1-208	ENST00000469356	EYA3	Q99504	573 aa		28.43	■■■□□ 2.14
SREBF1-208	ENST00000469356	PUS3	Q9BZE2	481 aa	Known RBP	28.43	■■■□□ 2.14
SREBF1-208	ENST00000469356	CEP126	Q9P2H0	1117 aa		28.43	■■■□□ 2.14
SREBF1-208	ENST00000469356	NOP58	Q9Y2X3	529 aa	Known RBP	28.43	■■■□□ 2.14
SREBF1-208	ENST00000469356	LTBP3	Q9NS15	1303 aa		28.42	■■■□□ 2.14
SREBF1-208	ENST00000469356	GPSM2	P81274	684 aa		28.42	■■■□□ 2.14
SREBF1-208	ENST00000469356	LRRC24	Q50LG9	513 aa		28.42	■■■□□ 2.14
SREBF1-208	ENST00000469356	ERC1	Q8IUD2	1116 aa		28.42	■■■□□ 2.14
SREBF1-208	ENST00000469356	VPS33B	Q9H267	617 aa		28.42	■■■□□ 2.14
SREBF1-208	ENST00000469356	FER1L6	Q2WGJ9	1857 aa		28.41	■■■□□ 2.14
SREBF1-208	ENST00000469356	C6orf229	H3BNL8	230 aa		28.41	■■■□□ 2.14
SREBF1-208	ENST00000469356	PCDHB15	Q9Y5E8	787 aa		28.41	■■■□□ 2.14
SREBF1-208	ENST00000469356	SRCAP	Q6ZRS2	3230 aa		28.4	■■■□□ 2.14
SREBF1-208	ENST00000469356	COL4A1	P02462	1669 aa		28.4	■■■□□ 2.14
SREBF1-208	ENST00000469356	OLFM4	Q6UX06	510 aa		28.4	■■■□□ 2.14
SREBF1-208	ENST00000469356	SIRT2	Q8IXJ6	389 aa		28.4	■■■□□ 2.14
SREBF1-208	ENST00000469356	RTFDC1	Q9BY42	306 aa	Predicted RBP	28.4	■■■□□ 2.14
SREBF1-208	ENST00000469356	RWDD1	Q9H446	243 aa	Predicted RBP	28.4	■■■□□ 2.14
SREBF1-208	ENST00000469356	RAB11FIP3	O75154	756 aa		28.38	■■■□□ 2.13
SREBF1-208	ENST00000469356	UFL1	O94874	794 aa		28.38	■■■□□ 2.13
SREBF1-208	ENST00000469356	PDE8B	O95263	885 aa		28.38	■■■□□ 2.13
SREBF1-208	ENST00000469356	ATG9A	Q7Z3C6	839 aa		28.38	■■■□□ 2.13
SREBF1-208	ENST00000469356	UBE4A	Q14139	1066 aa		28.37	■■■□□ 2.13
SREBF1-208	ENST00000469356	TBC1D16	Q8TBP0	767 aa		28.37	■■■□□ 2.13
SREBF1-208	ENST00000469356	AKAP2	Q9Y2D5	859 aa		28.37	■■■□□ 2.13
SREBF1-208	ENST00000469356	ZNF804B	A4D1E1	1349 aa		28.36	■■■□□ 2.13
SREBF1-208	ENST00000469356	HDAC1	Q13547	482 aa	Predicted RBP	28.36	■■■□□ 2.13
SREBF1-208	ENST00000469356	ERICH6B	Q5W0A0	696 aa		28.36	■■■□□ 2.13
SREBF1-208	ENST00000469356	HELB	Q8NG08	1087 aa	Predicted RBP	28.36	■■■□□ 2.13
SREBF1-208	ENST00000469356	ZC3H12C	Q9C0D7	883 aa	Known RBP	28.36	■■■□□ 2.13
SREBF1-208	ENST00000469356	NFKBIE	O00221	500 aa		28.35	■■■□□ 2.13
SREBF1-208	ENST00000469356	TAF5L	O75529	589 aa		28.35	■■■□□ 2.13
SREBF1-208	ENST00000469356	WASHC4	Q2M389	1173 aa		28.35	■■■□□ 2.13
SREBF1-208	ENST00000469356	SNED1	Q8TER0	1413 aa		28.34	■■■□□ 2.13
SREBF1-208	ENST00000469356	LMNB1	P20700	586 aa		28.34	■■■□□ 2.13
SREBF1-208	ENST00000469356	PUM3	Q15397	648 aa	Known RBP	28.34	■■■□□ 2.13
SREBF1-208	ENST00000469356	POLL	Q9UGP5	575 aa		28.34	■■■□□ 2.13
SREBF1-208	ENST00000469356	EXOC6B	Q9Y2D4	811 aa		28.34	■■■□□ 2.13
SREBF1-208	ENST00000469356		G3V3G9	751 aa		28.33	■■■□□ 2.13
SREBF1-208	ENST00000469356	IFIT1	P09914	478 aa	Known RBP	28.33	■■■□□ 2.13
SREBF1-208	ENST00000469356	DCAF8	Q5TAQ9	597 aa		28.33	■■■□□ 2.13
SREBF1-208	ENST00000469356	KIF1BP	Q96EK5	621 aa		28.33	■■■□□ 2.13
SREBF1-208	ENST00000469356	DCTPP1	Q9H773	170 aa		28.33	■■■□□ 2.13
SREBF1-208	ENST00000469356	ZBTB47	Q9UFB7	747 aa	Predicted RBP	28.33	■■■□□ 2.13
SREBF1-208	ENST00000469356	SLC5A1	P13866	664 aa		28.32	■■■□□ 2.12
SREBF1-208	ENST00000469356	IARS	P41252	1262 aa	Known RBP	28.32	■■■□□ 2.12
SREBF1-208	ENST00000469356	RASSF7	Q02833	373 aa		28.32	■■■□□ 2.12
SREBF1-208	ENST00000469356	GCC1	Q96CN9	775 aa		28.32	■■■□□ 2.12
SREBF1-208	ENST00000469356		A0A1B0GUL6	1792 aa		28.31	■■■□□ 2.12
SREBF1-208	ENST00000469356	PPIP5K2	O43314	1243 aa		28.31	■■■□□ 2.12
SREBF1-208	ENST00000469356	TFCP2	Q12800	502 aa		28.31	■■■□□ 2.12
SREBF1-208	ENST00000469356	LARGE2	Q8N3Y3	721 aa		28.31	■■■□□ 2.12
SREBF1-208	ENST00000469356	VGLL2	Q8N8G2	317 aa		28.31	■■■□□ 2.12
SREBF1-208	ENST00000469356	JDP2	Q8WYK2	163 aa		28.31	■■■□□ 2.12
SREBF1-208	ENST00000469356	LPIN2	Q92539	896 aa		28.31	■■■□□ 2.12
SREBF1-208	ENST00000469356	GPR108	Q9NPR9	543 aa		28.31	■■■□□ 2.12
SREBF1-208	ENST00000469356	ZNF277	Q9NRM2	450 aa	Predicted RBP	28.31	■■■□□ 2.12
SREBF1-208	ENST00000469356	MED23	Q9ULK4	1368 aa		28.3	■■■□□ 2.12
SREBF1-208	ENST00000469356	KIAA2012	Q0VF49	1180 aa		28.3	■■■□□ 2.12
SREBF1-208	ENST00000469356	LTBP1	Q14766	1721 aa		28.3	■■■□□ 2.12
SREBF1-208	ENST00000469356	ATP2B3	Q16720	1220 aa		28.3	■■■□□ 2.12
SREBF1-208	ENST00000469356	CCDC88A	Q3V6T2	1871 aa		28.3	■■■□□ 2.12
SREBF1-208	ENST00000469356	C15orf52	Q6ZUT6	534 aa	Known RBP	28.29	■■■□□ 2.12
SREBF1-208	ENST00000469356	SLC51A	Q86UW1	340 aa		28.29	■■■□□ 2.12
SREBF1-208	ENST00000469356	SASH1	O94885	1247 aa		28.28	■■■□□ 2.12
SREBF1-208	ENST00000469356	CAVIN4	Q5BKX8	364 aa		28.28	■■■□□ 2.12
SREBF1-208	ENST00000469356	RHPN1	Q8TCX5	695 aa		28.28	■■■□□ 2.12
SREBF1-208	ENST00000469356	SBF1	O95248	1867 aa		28.28	■■■□□ 2.12
SREBF1-208	ENST00000469356	RIMBP2	O15034	1052 aa		28.27	■■■□□ 2.12
SREBF1-208	ENST00000469356	NIM1K	Q8IY84	436 aa		28.27	■■■□□ 2.12
SREBF1-208	ENST00000469356	CLASRP	Q8N2M8	674 aa	Known RBP	28.27	■■■□□ 2.12

Retrieved 100 of 20,778 RNA–protein pairs in 43.5 ms