RNA–Protein interactions for RNA: ENST00000463988.1

SNRNP40-203, Transcript of small nuclear ribonucleoprotein U5 subunit 40, humanhuman

TSL 2

Gene SNRNP40, Length 677 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNRNP40-203ENST00000463988 ECE2O60344 883 aa18.4■□□□□ 0.54
SNRNP40-203ENST00000463988 HIRAP54198 1017 aaPredicted RBP18.4■□□□□ 0.54
SNRNP40-203ENST00000463988 CST9Q5W186 159 aa18.4■□□□□ 0.54
SNRNP40-203ENST00000463988 MICALL2Q8IY33 904 aa18.4■□□□□ 0.54
SNRNP40-203ENST00000463988 CDC5LQ99459 802 aaKnown RBP18.4■□□□□ 0.54
SNRNP40-203ENST00000463988 RTL9Q8NET4 1388 aa18.4■□□□□ 0.54
SNRNP40-203ENST00000463988 H7C1W4 665 aa18.39■□□□□ 0.53
SNRNP40-203ENST00000463988 TRAF5O00463 557 aa18.39■□□□□ 0.53
SNRNP40-203ENST00000463988 UFL1O94874 794 aa18.39■□□□□ 0.53
SNRNP40-203ENST00000463988 FMR1Q06787 632 aaKnown RBP eCLIP18.39■□□□□ 0.53
SNRNP40-203ENST00000463988 FLIIQ13045 1269 aa18.39■□□□□ 0.53
SNRNP40-203ENST00000463988 DOK7Q18PE1 504 aa18.39■□□□□ 0.53
SNRNP40-203ENST00000463988 TTLL11Q8NHH1 800 aa18.39■□□□□ 0.53
SNRNP40-203ENST00000463988 ZBTB12Q9Y330 459 aaPredicted RBP18.39■□□□□ 0.53
SNRNP40-203ENST00000463988 TRPM7Q96QT4 1865 aa18.39■□□□□ 0.53
SNRNP40-203ENST00000463988 CACNA1FO60840 1977 aa18.39■□□□□ 0.53
SNRNP40-203ENST00000463988 VAMP4O75379 141 aa18.38■□□□□ 0.53
SNRNP40-203ENST00000463988 CWF19L2Q2TBE0 894 aaKnown RBP18.38■□□□□ 0.53
SNRNP40-203ENST00000463988 TNS4Q8IZW8 715 aa18.38■□□□□ 0.53
SNRNP40-203ENST00000463988 TRPM4Q8TD43 1214 aa18.38■□□□□ 0.53
SNRNP40-203ENST00000463988 CCDC85AQ96PX6 553 aaPredicted RBP18.38■□□□□ 0.53
SNRNP40-203ENST00000463988 WBP1LQ9NX94 342 aa18.38■□□□□ 0.53
SNRNP40-203ENST00000463988 XDHP47989 1333 aa18.38■□□□□ 0.53
SNRNP40-203ENST00000463988 WDR33Q9C0J8 1336 aaKnown RBP18.38■□□□□ 0.53
SNRNP40-203ENST00000463988 VIL1P09327 827 aaKnown RBP18.37■□□□□ 0.53
SNRNP40-203ENST00000463988 CDC37L1Q7L3B6 337 aa18.37■□□□□ 0.53
SNRNP40-203ENST00000463988 AIDAQ96BJ3 306 aa18.37■□□□□ 0.53
SNRNP40-203ENST00000463988 GPR101Q96P66 508 aaPredicted RBP18.37■□□□□ 0.53
SNRNP40-203ENST00000463988 PLA2G12BQ9BX93 195 aa18.37■□□□□ 0.53
SNRNP40-203ENST00000463988 KCNQ5Q9NR82 932 aa18.37■□□□□ 0.53
SNRNP40-203ENST00000463988 BSDC1Q9NW68 430 aaPredicted RBP18.37■□□□□ 0.53
SNRNP40-203ENST00000463988 TLL2Q9Y6L7 1015 aa18.37■□□□□ 0.53
SNRNP40-203ENST00000463988 SHTN1A0MZ66 631 aa18.36■□□□□ 0.53
SNRNP40-203ENST00000463988 G3V3G9 751 aa18.36■□□□□ 0.53
SNRNP40-203ENST00000463988 FOXN1O15353 648 aa18.36■□□□□ 0.53
SNRNP40-203ENST00000463988 ATP2B4P23634 1241 aa18.36■□□□□ 0.53
SNRNP40-203ENST00000463988 ECE1P42892 770 aa18.36■□□□□ 0.53
SNRNP40-203ENST00000463988 FKBP5Q13451 457 aaPredicted RBP18.36■□□□□ 0.53
SNRNP40-203ENST00000463988 GCKRQ14397 625 aa18.36■□□□□ 0.53
SNRNP40-203ENST00000463988 DCAF8Q5TAQ9 597 aa18.36■□□□□ 0.53
SNRNP40-203ENST00000463988 LINS1Q8NG48 757 aa18.36■□□□□ 0.53
SNRNP40-203ENST00000463988 DNAAF4Q8WXU2 420 aa18.36■□□□□ 0.53
SNRNP40-203ENST00000463988 GLIS2Q9BZE0 524 aaPredicted RBP18.36■□□□□ 0.53
SNRNP40-203ENST00000463988 MYH16Q9H6N6 1097 aa18.36■□□□□ 0.53
SNRNP40-203ENST00000463988 ZNF609O15014 1411 aa18.35■□□□□ 0.53
SNRNP40-203ENST00000463988 CTCFP49711 727 aaPredicted RBP18.35■□□□□ 0.53
SNRNP40-203ENST00000463988 MAP2K1Q02750 393 aaPredicted RBP18.35■□□□□ 0.53
SNRNP40-203ENST00000463988 EXOSC9Q06265 439 aaKnown RBP18.35■□□□□ 0.53
SNRNP40-203ENST00000463988 UBE3BQ7Z3V4 1068 aa18.35■□□□□ 0.53
SNRNP40-203ENST00000463988 HHIPL1Q96JK4 782 aa18.35■□□□□ 0.53
SNRNP40-203ENST00000463988 GREM2Q9H772 168 aa18.35■□□□□ 0.53
SNRNP40-203ENST00000463988 PRDM10Q9NQV6 1147 aa18.35■□□□□ 0.53
SNRNP40-203ENST00000463988 SALL2Q9Y467 1007 aaPredicted RBP18.35■□□□□ 0.53
SNRNP40-203ENST00000463988 MYH3P11055 1940 aa18.35■□□□□ 0.53
SNRNP40-203ENST00000463988 CELF2O95319 508 aaKnown RBP18.34■□□□□ 0.53
SNRNP40-203ENST00000463988 SAMD7Q7Z3H4 446 aa18.34■□□□□ 0.53
SNRNP40-203ENST00000463988 SAPCD2Q86UD0 394 aa18.34■□□□□ 0.53
SNRNP40-203ENST00000463988 CAPNS2Q96L46 248 aa18.34■□□□□ 0.53
SNRNP40-203ENST00000463988 MINPP1Q9UNW1 487 aa18.34■□□□□ 0.53
SNRNP40-203ENST00000463988 CASP7P55210 303 aa18.33■□□□□ 0.52
SNRNP40-203ENST00000463988 TBC1D10BQ4KMP7 808 aaPredicted RBP18.33■□□□□ 0.52
SNRNP40-203ENST00000463988 PODNQ7Z5L7 613 aa18.33■□□□□ 0.52
SNRNP40-203ENST00000463988 AGBL3Q8NEM8 1001 aa18.33■□□□□ 0.52
SNRNP40-203ENST00000463988 SCN9AQ15858 1988 aa18.33■□□□□ 0.52
SNRNP40-203ENST00000463988 CSF1RP07333 972 aa18.32■□□□□ 0.52
SNRNP40-203ENST00000463988 RSBN1LQ6PCB5 846 aaPredicted RBP18.32■□□□□ 0.52
SNRNP40-203ENST00000463988 SPINK5Q9NQ38 1064 aaPredicted RBP18.32■□□□□ 0.52
SNRNP40-203ENST00000463988 MED23Q9ULK4 1368 aa18.31■□□□□ 0.52
SNRNP40-203ENST00000463988 THSD7BQ9C0I4 1608 aa18.31■□□□□ 0.52
SNRNP40-203ENST00000463988 EGFRP00533 1210 aa18.31■□□□□ 0.52
SNRNP40-203ENST00000463988 MAP2K2P36507 400 aa18.31■□□□□ 0.52
SNRNP40-203ENST00000463988 IGHMBP2P38935 993 aaKnown RBP18.31■□□□□ 0.52
SNRNP40-203ENST00000463988 ZNF280AP59817 542 aaPredicted RBP18.31■□□□□ 0.52
SNRNP40-203ENST00000463988 CYP4F22Q6NT55 531 aa18.31■□□□□ 0.52
SNRNP40-203ENST00000463988 PAXIP1Q6ZW49 1069 aaPredicted RBP18.31■□□□□ 0.52
SNRNP40-203ENST00000463988 USP48Q86UV5 1035 aa18.31■□□□□ 0.52
SNRNP40-203ENST00000463988 FAM9BQ8IZU0 186 aa18.31■□□□□ 0.52
SNRNP40-203ENST00000463988 ITGA6P23229 1130 aa18.3■□□□□ 0.52
SNRNP40-203ENST00000463988 CCT4P50991 539 aaKnown RBP18.3■□□□□ 0.52
SNRNP40-203ENST00000463988 KIF4BQ2VIQ3 1234 aa18.3■□□□□ 0.52
SNRNP40-203ENST00000463988 KRT26Q7Z3Y9 468 aa18.3■□□□□ 0.52
SNRNP40-203ENST00000463988 DCPSQ96C86 337 aaKnown RBP18.3■□□□□ 0.52
SNRNP40-203ENST00000463988 GMLQ99445 158 aa18.3■□□□□ 0.52
SNRNP40-203ENST00000463988 LEMD3Q9Y2U8 911 aa18.3■□□□□ 0.52
SNRNP40-203ENST00000463988 USP17L3A6NCW0 530 aa18.29■□□□□ 0.52
SNRNP40-203ENST00000463988 USP17L4A6NCW7 530 aa18.29■□□□□ 0.52
SNRNP40-203ENST00000463988 RBM26Q5T8P6 1007 aaKnown RBP18.29■□□□□ 0.52
SNRNP40-203ENST00000463988 USP17L1Q7RTZ2 530 aa18.29■□□□□ 0.52
SNRNP40-203ENST00000463988 ANKRD2Q9GZV1 360 aa18.29■□□□□ 0.52
SNRNP40-203ENST00000463988 PSME4Q14997 1843 aa18.28■□□□□ 0.52
SNRNP40-203ENST00000463988 BEND3Q5T5X7 828 aa18.28■□□□□ 0.52
SNRNP40-203ENST00000463988 MPHOSPH8Q99549 860 aa18.28■□□□□ 0.52
SNRNP40-203ENST00000463988 ZNF408Q9H9D4 720 aa18.28■□□□□ 0.52
SNRNP40-203ENST00000463988 WTIPA6NIX2 430 aaPredicted RBP18.27■□□□□ 0.52
SNRNP40-203ENST00000463988 USP17L8P0C7I0 530 aa18.27■□□□□ 0.52
SNRNP40-203ENST00000463988 HSPA8P11142 646 aaKnown RBP18.27■□□□□ 0.52
SNRNP40-203ENST00000463988 LBX1P52954 281 aa18.27■□□□□ 0.52
SNRNP40-203ENST00000463988 FAM161AQ3B820 660 aa18.27■□□□□ 0.52
SNRNP40-203ENST00000463988 BEGAINQ9BUH8 593 aa18.27■□□□□ 0.52
SNRNP40-203ENST00000463988 COA1Q9GZY4 146 aa18.27■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms