RNA–Protein interactions for RNA: ENST00000459947.5

UBR4-208, Transcript of ubiquitin protein ligase E3 component n-recognin 4, humanhuman

TSL 2

Gene UBR4, Length 3,873 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBR4-208ENST00000459947 ANKRD44Q8N8A2 993 aa13.35□□□□□ -0.27
UBR4-208ENST00000459947 NSFL1CQ9UNZ2 370 aaKnown RBP13.34□□□□□ -0.27
UBR4-208ENST00000459947 MED23Q9ULK4 1368 aa13.34□□□□□ -0.27
UBR4-208ENST00000459947 G3V3G9 751 aa13.34□□□□□ -0.27
UBR4-208ENST00000459947 KCNJ4P48050 445 aa13.34□□□□□ -0.27
UBR4-208ENST00000459947 MMP14P50281 582 aa13.34□□□□□ -0.27
UBR4-208ENST00000459947 DCAF8Q5TAQ9 597 aa13.34□□□□□ -0.27
UBR4-208ENST00000459947 C15orf52Q6ZUT6 534 aaKnown RBP13.34□□□□□ -0.27
UBR4-208ENST00000459947 LTBP1Q14766 1721 aa13.34□□□□□ -0.27
UBR4-208ENST00000459947 C6orf229H3BNL8 230 aa13.34□□□□□ -0.27
UBR4-208ENST00000459947 CIAO1O76071 339 aa13.34□□□□□ -0.27
UBR4-208ENST00000459947 LDHAL6AQ6ZMR3 332 aa13.34□□□□□ -0.27
UBR4-208ENST00000459947 ZC3H12CQ9C0D7 883 aaKnown RBP13.34□□□□□ -0.27
UBR4-208ENST00000459947 UFL1O94874 794 aa13.33□□□□□ -0.28
UBR4-208ENST00000459947 MVPQ14764 893 aaKnown RBP13.33□□□□□ -0.28
UBR4-208ENST00000459947 MINPP1Q9UNW1 487 aa13.33□□□□□ -0.28
UBR4-208ENST00000459947 CCDC88AQ3V6T2 1871 aa13.33□□□□□ -0.28
UBR4-208ENST00000459947 GPSM2P81274 684 aa13.33□□□□□ -0.28
UBR4-208ENST00000459947 TNIP1Q15025 636 aa13.33□□□□□ -0.28
UBR4-208ENST00000459947 CLUAP1Q96AJ1 413 aa13.33□□□□□ -0.28
UBR4-208ENST00000459947 MEIS3Q99687 375 aa13.33□□□□□ -0.28
UBR4-208ENST00000459947 LRRFIP2Q9Y608 721 aaKnown RBP13.33□□□□□ -0.28
UBR4-208ENST00000459947 WASHC4Q2M389 1173 aa13.32□□□□□ -0.28
UBR4-208ENST00000459947 TBC1D16Q8TBP0 767 aa13.32□□□□□ -0.28
UBR4-208ENST00000459947 CCDC85AQ96PX6 553 aaPredicted RBP13.32□□□□□ -0.28
UBR4-208ENST00000459947 ZNRF3Q9ULT6 936 aa13.32□□□□□ -0.28
UBR4-208ENST00000459947 SPEF2Q9C093 1822 aa13.32□□□□□ -0.28
UBR4-208ENST00000459947 UBE4AQ14139 1066 aa13.32□□□□□ -0.28
UBR4-208ENST00000459947 EPHA10Q5JZY3 1008 aa13.32□□□□□ -0.28
UBR4-208ENST00000459947 ZNF277Q9NRM2 450 aaPredicted RBP13.32□□□□□ -0.28
UBR4-208ENST00000459947 IQCA1LA6NCM1 817 aa13.32□□□□□ -0.28
UBR4-208ENST00000459947 GLTPD2A6NH11 291 aa13.32□□□□□ -0.28
UBR4-208ENST00000459947 HMMRO75330 724 aa13.32□□□□□ -0.28
UBR4-208ENST00000459947 KAZALD1Q96I82 304 aa13.32□□□□□ -0.28
UBR4-208ENST00000459947 COPRSQ9NQ92 184 aa13.31□□□□□ -0.28
UBR4-208ENST00000459947 FZD9O00144 591 aa13.31□□□□□ -0.28
UBR4-208ENST00000459947 DUOX1Q9NRD9 1551 aa13.31□□□□□ -0.28
UBR4-208ENST00000459947 EYA2O00167 538 aa13.31□□□□□ -0.28
UBR4-208ENST00000459947 IL15P40933 162 aaPredicted RBP13.31□□□□□ -0.28
UBR4-208ENST00000459947 CHRNDQ07001 517 aa13.31□□□□□ -0.28
UBR4-208ENST00000459947 HSP90AB4PQ58FF6 505 aa13.31□□□□□ -0.28
UBR4-208ENST00000459947 GPBP1L1Q9HC44 474 aaPredicted RBP13.31□□□□□ -0.28
UBR4-208ENST00000459947 WDR90Q96KV7 1748 aa13.31□□□□□ -0.28
UBR4-208ENST00000459947 ZNF609O15014 1411 aa13.3□□□□□ -0.28
UBR4-208ENST00000459947 COA1Q9GZY4 146 aa13.3□□□□□ -0.28
UBR4-208ENST00000459947 ZNF804BA4D1E1 1349 aa13.3□□□□□ -0.28
UBR4-208ENST00000459947 RPAP2Q8IXW5 612 aaPredicted RBP13.3□□□□□ -0.28
UBR4-208ENST00000459947 RRP1P56182 461 aaKnown RBP13.3□□□□□ -0.28
UBR4-208ENST00000459947 ZNF804AQ7Z570 1209 aa13.3□□□□□ -0.28
UBR4-208ENST00000459947 PODNQ7Z5L7 613 aa13.3□□□□□ -0.28
UBR4-208ENST00000459947 GPC2Q8N158 579 aa13.3□□□□□ -0.28
UBR4-208ENST00000459947 RPS12P25398 132 aaKnown RBP13.29□□□□□ -0.28
UBR4-208ENST00000459947 L3MBTL3Q96JM7 780 aaPredicted RBP13.29□□□□□ -0.28
UBR4-208ENST00000459947 TAF1P21675 1872 aa13.29□□□□□ -0.28
UBR4-208ENST00000459947 ZBTB7BO15156 539 aaPredicted RBP13.29□□□□□ -0.28
UBR4-208ENST00000459947 METTL24Q5JXM2 366 aa13.29□□□□□ -0.28
UBR4-208ENST00000459947 CIAPIN1Q6FI81 312 aa13.29□□□□□ -0.28
UBR4-208ENST00000459947 MYO3BQ8WXR4 1341 aa13.29□□□□□ -0.28
UBR4-208ENST00000459947 A0A1B0GUL6 1792 aa13.29□□□□□ -0.28
UBR4-208ENST00000459947 ZBTB22O15209 634 aa13.29□□□□□ -0.28
UBR4-208ENST00000459947 ATP8B2P98198 1209 aa13.29□□□□□ -0.28
UBR4-208ENST00000459947 AKAP2Q9Y2D5 859 aa13.29□□□□□ -0.28
UBR4-208ENST00000459947 IFIT1P09914 478 aaKnown RBP13.28□□□□□ -0.28
UBR4-208ENST00000459947 LMOD1P29536 600 aaPredicted RBP13.28□□□□□ -0.28
UBR4-208ENST00000459947 CEP126Q9P2H0 1117 aa13.28□□□□□ -0.28
UBR4-208ENST00000459947 SCN4AP35499 1836 aa13.28□□□□□ -0.28
UBR4-208ENST00000459947 SRGAP3O43295 1099 aa13.28□□□□□ -0.28
UBR4-208ENST00000459947 AOC3Q16853 763 aa13.28□□□□□ -0.28
UBR4-208ENST00000459947 ERC1Q8IUD2 1116 aa13.28□□□□□ -0.28
UBR4-208ENST00000459947 RIPOR2Q9Y4F9 1068 aa13.28□□□□□ -0.28
UBR4-208ENST00000459947 RFX5P48382 616 aaPredicted RBP13.28□□□□□ -0.28
UBR4-208ENST00000459947 C16orf71Q8IYS4 520 aaPredicted RBP13.28□□□□□ -0.28
UBR4-208ENST00000459947 POLLQ9UGP5 575 aa13.28□□□□□ -0.28
UBR4-208ENST00000459947 SLC5A1P13866 664 aa13.27□□□□□ -0.28
UBR4-208ENST00000459947 G3BP1Q13283 466 aaKnown RBP eCLIP13.27□□□□□ -0.28
UBR4-208ENST00000459947 PANK1Q8TE04 598 aa13.27□□□□□ -0.28
UBR4-208ENST00000459947 OLFM4Q6UX06 510 aa13.27□□□□□ -0.29
UBR4-208ENST00000459947 ZNF784Q8NCA9 323 aaPredicted RBP13.27□□□□□ -0.29
UBR4-208ENST00000459947 VEGFAP15692 232 aaPredicted RBP13.27□□□□□ -0.29
UBR4-208ENST00000459947 PUM3Q15397 648 aaKnown RBP13.27□□□□□ -0.29
UBR4-208ENST00000459947 RLBP1P12271 317 aa13.26□□□□□ -0.29
UBR4-208ENST00000459947 PTPN12Q05209 780 aaKnown RBP13.26□□□□□ -0.29
UBR4-208ENST00000459947 SSH3Q8TE77 659 aa13.26□□□□□ -0.29
UBR4-208ENST00000459947 ECE2O60344 883 aa13.26□□□□□ -0.29
UBR4-208ENST00000459947 FKBP1AP62942 108 aaKnown RBP13.26□□□□□ -0.29
UBR4-208ENST00000459947 POLA2Q14181 598 aa13.26□□□□□ -0.29
UBR4-208ENST00000459947 PSME4Q14997 1843 aa13.26□□□□□ -0.29
UBR4-208ENST00000459947 CAVIN4Q5BKX8 364 aa13.26□□□□□ -0.29
UBR4-208ENST00000459947 GNL3LQ9NVN8 582 aaKnown RBP13.26□□□□□ -0.29
UBR4-208ENST00000459947 PDE8BO95263 885 aa13.25□□□□□ -0.29
UBR4-208ENST00000459947 PRELPP51888 382 aa13.25□□□□□ -0.29
UBR4-208ENST00000459947 GPR108Q9NPR9 543 aa13.25□□□□□ -0.29
UBR4-208ENST00000459947 DPF2Q92785 391 aa13.25□□□□□ -0.29
UBR4-208ENST00000459947 HACL1Q9UJ83 578 aa13.25□□□□□ -0.29
UBR4-208ENST00000459947 TNNQ9UQP3 1299 aa13.25□□□□□ -0.29
UBR4-208ENST00000459947 PNMA8AQ86V59 439 aaPredicted RBP13.25□□□□□ -0.29
UBR4-208ENST00000459947 LPIN2Q92539 896 aa13.25□□□□□ -0.29
UBR4-208ENST00000459947 ZNF594Q96JF6 807 aaPredicted RBP13.25□□□□□ -0.29
UBR4-208ENST00000459947 COG6Q9Y2V7 657 aa13.25□□□□□ -0.29
UBR4-208ENST00000459947 IGSF3O75054 1194 aa13.24□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms