RNA–Protein interactions for RNA: ENST00000454428.5

UBE2D4-209, Transcript of ubiquitin conjugating enzyme E2 D4 (putative), humanhuman

TSL 3

Gene UBE2D4, Length 288 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE2D4-209ENST00000454428 C6orf229H3BNL8 230 aa22.6■■□□□ 1.21
UBE2D4-209ENST00000454428 VIL1P09327 827 aaKnown RBP22.6■■□□□ 1.21
UBE2D4-209ENST00000454428 HTTP42858 3142 aa22.59■■□□□ 1.21
UBE2D4-209ENST00000454428 KRT24Q2M2I5 525 aa22.59■■□□□ 1.21
UBE2D4-209ENST00000454428 TBC1D16Q8TBP0 767 aa22.59■■□□□ 1.21
UBE2D4-209ENST00000454428 FAM89AQ96GI7 184 aa22.59■■□□□ 1.21
UBE2D4-209ENST00000454428 BABAM1Q9NWV8 329 aa22.59■■□□□ 1.21
UBE2D4-209ENST00000454428 HPS5Q9UPZ3 1129 aa22.59■■□□□ 1.21
UBE2D4-209ENST00000454428 MAPK8IP3Q9UPT6 1336 aa22.58■■□□□ 1.21
UBE2D4-209ENST00000454428 SULF1Q8IWU6 871 aa22.58■■□□□ 1.21
UBE2D4-209ENST00000454428 ISCA1Q9BUE6 129 aa22.58■■□□□ 1.21
UBE2D4-209ENST00000454428 PSME4Q14997 1843 aa22.58■■□□□ 1.21
UBE2D4-209ENST00000454428 PAPPA2Q9BXP8 1791 aa22.57■■□□□ 1.2
UBE2D4-209ENST00000454428 ZNF609O15014 1411 aa22.57■■□□□ 1.2
UBE2D4-209ENST00000454428 CENPFP49454 3210 aa22.56■■□□□ 1.2
UBE2D4-209ENST00000454428 RIPK4P57078 832 aa22.56■■□□□ 1.2
UBE2D4-209ENST00000454428 ZNF280AP59817 542 aaPredicted RBP22.56■■□□□ 1.2
UBE2D4-209ENST00000454428 CHPF2Q9P2E5 772 aa22.56■■□□□ 1.2
UBE2D4-209ENST00000454428 BRCA2P51587 3418 aa22.55■■□□□ 1.2
UBE2D4-209ENST00000454428 SCARF1Q14162 830 aa22.55■■□□□ 1.2
UBE2D4-209ENST00000454428 ANGEL2Q5VTE6 544 aaKnown RBP22.55■■□□□ 1.2
UBE2D4-209ENST00000454428 EYA3Q99504 573 aa22.55■■□□□ 1.2
UBE2D4-209ENST00000454428 ATP5J2-PTCD1G3V325 749 aa22.54■■□□□ 1.2
UBE2D4-209ENST00000454428 MOB2Q70IA6 237 aa22.54■■□□□ 1.2
UBE2D4-209ENST00000454428 REM2Q8IYK8 340 aaPredicted RBP22.54■■□□□ 1.2
UBE2D4-209ENST00000454428 PLBD2Q8NHP8 589 aa22.54■■□□□ 1.2
UBE2D4-209ENST00000454428 PODXL2Q9NZ53 605 aa22.54■■□□□ 1.2
UBE2D4-209ENST00000454428 RPS8P62241 208 aaKnown RBP22.53■■□□□ 1.2
UBE2D4-209ENST00000454428 RTL5Q5HYW3 569 aaPredicted RBP22.53■■□□□ 1.2
UBE2D4-209ENST00000454428 ZNF296Q8WUU4 475 aaPredicted RBP22.53■■□□□ 1.2
UBE2D4-209ENST00000454428 PNNQ9H307 717 aaKnown RBP22.53■■□□□ 1.2
UBE2D4-209ENST00000454428 GMLQ99445 158 aa22.52■■□□□ 1.2
UBE2D4-209ENST00000454428 SCAF8Q9UPN6 1271 aaKnown RBP22.52■■□□□ 1.2
UBE2D4-209ENST00000454428 TBC1D8O95759 1140 aa22.51■■□□□ 1.19
UBE2D4-209ENST00000454428 TMPOP42166 694 aaKnown RBP22.51■■□□□ 1.19
UBE2D4-209ENST00000454428 FKBP1BP68106 108 aa22.51■■□□□ 1.19
UBE2D4-209ENST00000454428 RSBN1LQ6PCB5 846 aaPredicted RBP22.51■■□□□ 1.19
UBE2D4-209ENST00000454428 ANKRD13DQ6ZTN6 518 aa22.51■■□□□ 1.19
UBE2D4-209ENST00000454428 ZC3H12CQ9C0D7 883 aaKnown RBP22.51■■□□□ 1.19
UBE2D4-209ENST00000454428 SEC31BQ9NQW1 1179 aa22.51■■□□□ 1.19
UBE2D4-209ENST00000454428 CHL1O00533 1208 aa22.5■■□□□ 1.19
UBE2D4-209ENST00000454428 PKN2Q16513 984 aaKnown RBP22.5■■□□□ 1.19
UBE2D4-209ENST00000454428 AGBL3Q8NEM8 1001 aa22.5■■□□□ 1.19
UBE2D4-209ENST00000454428 ZNF646O15015 1829 aaPredicted RBP22.5■■□□□ 1.19
UBE2D4-209ENST00000454428 IRS4O14654 1257 aaPredicted RBP22.49■■□□□ 1.19
UBE2D4-209ENST00000454428 UFL1O94874 794 aa22.49■■□□□ 1.19
UBE2D4-209ENST00000454428 TRIM28Q13263 835 aaKnown RBP22.48■■□□□ 1.19
UBE2D4-209ENST00000454428 MYOZ2Q9NPC6 264 aa22.48■■□□□ 1.19
UBE2D4-209ENST00000454428 PITPNM2Q9BZ72 1349 aa22.48■■□□□ 1.19
UBE2D4-209ENST00000454428 UBE2Q2LH0YL09 131 aa22.47■■□□□ 1.19
UBE2D4-209ENST00000454428 PRAMEF18Q5VWM3 479 aa22.47■■□□□ 1.19
UBE2D4-209ENST00000454428 HDAC9Q9UKV0 1011 aa22.47■■□□□ 1.19
UBE2D4-209ENST00000454428 TM4SF4P48230 202 aa22.46■■□□□ 1.19
UBE2D4-209ENST00000454428 HDGFL1Q5TGJ6 251 aa22.46■■□□□ 1.19
UBE2D4-209ENST00000454428 GGA1Q9UJY5 639 aa22.46■■□□□ 1.19
UBE2D4-209ENST00000454428 GPR25O00155 361 aa22.45■■□□□ 1.18
UBE2D4-209ENST00000454428 USP17L8P0C7I0 530 aa22.45■■□□□ 1.18
UBE2D4-209ENST00000454428 NOM1Q5C9Z4 860 aaKnown RBP22.45■■□□□ 1.18
UBE2D4-209ENST00000454428 R3HDMLQ9H3Y0 253 aa22.45■■□□□ 1.18
UBE2D4-209ENST00000454428 ANKIB1Q9P2G1 1089 aa22.45■■□□□ 1.18
UBE2D4-209ENST00000454428 WTIPA6NIX2 430 aaPredicted RBP22.44■■□□□ 1.18
UBE2D4-209ENST00000454428 LMOD3Q0VAK6 560 aa22.44■■□□□ 1.18
UBE2D4-209ENST00000454428 NBPF9Q3BBW0 867 aa22.44■■□□□ 1.18
UBE2D4-209ENST00000454428 DBF4Q9UBU7 674 aaPredicted RBP22.44■■□□□ 1.18
UBE2D4-209ENST00000454428 FBXO46Q6PJ61 603 aaPredicted RBP22.43■■□□□ 1.18
UBE2D4-209ENST00000454428 ZBTB38Q8NAP3 1195 aaPredicted RBP22.43■■□□□ 1.18
UBE2D4-209ENST00000454428 TRIM35Q9UPQ4 493 aa22.43■■□□□ 1.18
UBE2D4-209ENST00000454428 G3V3G9 751 aa22.42■■□□□ 1.18
UBE2D4-209ENST00000454428 HOXB7P09629 217 aa22.42■■□□□ 1.18
UBE2D4-209ENST00000454428 DCAF8Q5TAQ9 597 aa22.42■■□□□ 1.18
UBE2D4-209ENST00000454428 USP17L3A6NCW0 530 aa22.41■■□□□ 1.18
UBE2D4-209ENST00000454428 USP17L4A6NCW7 530 aa22.41■■□□□ 1.18
UBE2D4-209ENST00000454428 USP17L1Q7RTZ2 530 aa22.41■■□□□ 1.18
UBE2D4-209ENST00000454428 CFHR5Q9BXR6 569 aa22.41■■□□□ 1.18
UBE2D4-209ENST00000454428 LAS1LQ9Y4W2 734 aaKnown RBP22.41■■□□□ 1.18
UBE2D4-209ENST00000454428 MKRN3Q13064 507 aaKnown RBP22.4■■□□□ 1.18
UBE2D4-209ENST00000454428 MXD3Q9BW11 206 aa22.4■■□□□ 1.18
UBE2D4-209ENST00000454428 HYPKQ9NX55 129 aa22.4■■□□□ 1.18
UBE2D4-209ENST00000454428 XDHP47989 1333 aa22.39■■□□□ 1.18
UBE2D4-209ENST00000454428 NEUROD2Q15784 382 aa22.39■■□□□ 1.17
UBE2D4-209ENST00000454428 PODNQ7Z5L7 613 aa22.39■■□□□ 1.17
UBE2D4-209ENST00000454428 CCDC146Q8IYE0 955 aa22.38■■□□□ 1.17
UBE2D4-209ENST00000454428 JARID2Q92833 1246 aaPredicted RBP22.38■■□□□ 1.17
UBE2D4-209ENST00000454428 CCDC85AQ96PX6 553 aaPredicted RBP22.38■■□□□ 1.17
UBE2D4-209ENST00000454428 WNT10BO00744 389 aa22.37■■□□□ 1.17
UBE2D4-209ENST00000454428 PTPN12Q05209 780 aaKnown RBP22.37■■□□□ 1.17
UBE2D4-209ENST00000454428 CCDC152Q4G0S7 254 aa22.37■■□□□ 1.17
UBE2D4-209ENST00000454428 DACT2Q5SW24 774 aa22.37■■□□□ 1.17
UBE2D4-209ENST00000454428 DUSP27Q5VZP5 1158 aa22.37■■□□□ 1.17
UBE2D4-209ENST00000454428 PHAXQ9H814 394 aaKnown RBP22.37■■□□□ 1.17
UBE2D4-209ENST00000454428 PDE8AO60658 829 aa22.36■■□□□ 1.17
UBE2D4-209ENST00000454428 FKTNO75072 461 aa22.36■■□□□ 1.17
UBE2D4-209ENST00000454428 PCCAP05165 728 aaPredicted RBP22.36■■□□□ 1.17
UBE2D4-209ENST00000454428 ATP2B4P23634 1241 aa22.36■■□□□ 1.17
UBE2D4-209ENST00000454428 TTLL12Q14166 644 aaPredicted RBP22.36■■□□□ 1.17
UBE2D4-209ENST00000454428 RIC3Q7Z5B4 369 aa22.36■■□□□ 1.17
UBE2D4-209ENST00000454428 SPEF2Q9C093 1822 aa22.36■■□□□ 1.17
UBE2D4-209ENST00000454428 MYD88Q99836 296 aa22.35■■□□□ 1.17
UBE2D4-209ENST00000454428 MED23Q9ULK4 1368 aa22.35■■□□□ 1.17
UBE2D4-209ENST00000454428 LAMB1P07942 1786 aa22.35■■□□□ 1.17
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms