RNA–Protein interactions for RNA: ENST00000450940.5

USP40-207, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 670 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-207ENST00000450940 SPEF2Q9C093 1822 aa24.71■■□□□ 1.55
USP40-207ENST00000450940 RIMBP2O15034 1052 aa24.71■■□□□ 1.55
USP40-207ENST00000450940 CSF1RP07333 972 aa24.71■■□□□ 1.55
USP40-207ENST00000450940 MAP1SQ66K74 1059 aaPredicted RBP24.71■■□□□ 1.55
USP40-207ENST00000450940 BSDC1Q9NW68 430 aaPredicted RBP24.71■■□□□ 1.55
USP40-207ENST00000450940 ANKIB1Q9P2G1 1089 aa24.71■■□□□ 1.55
USP40-207ENST00000450940 GGA1Q9UJY5 639 aa24.71■■□□□ 1.55
USP40-207ENST00000450940 XDHP47989 1333 aa24.7■■□□□ 1.54
USP40-207ENST00000450940 E9PSI1 815 aa24.7■■□□□ 1.54
USP40-207ENST00000450940 F6X3S4 739 aa24.7■■□□□ 1.54
USP40-207ENST00000450940 ZC3H12CQ9C0D7 883 aaKnown RBP24.7■■□□□ 1.54
USP40-207ENST00000450940 DBNDD1Q9H9R9 158 aa24.7■■□□□ 1.54
USP40-207ENST00000450940 SCN9AQ15858 1988 aa24.69■■□□□ 1.54
USP40-207ENST00000450940 UFL1O94874 794 aa24.69■■□□□ 1.54
USP40-207ENST00000450940 DPF2Q92785 391 aa24.69■■□□□ 1.54
USP40-207ENST00000450940 ECE2O60344 883 aa24.68■■□□□ 1.54
USP40-207ENST00000450940 SLFN5Q08AF3 891 aa24.68■■□□□ 1.54
USP40-207ENST00000450940 GPR101Q96P66 508 aaPredicted RBP24.68■■□□□ 1.54
USP40-207ENST00000450940 PGAP2Q9UHJ9 254 aa24.68■■□□□ 1.54
USP40-207ENST00000450940 MINPP1Q9UNW1 487 aa24.68■■□□□ 1.54
USP40-207ENST00000450940 TMEM88BA6NKF7 163 aa24.67■■□□□ 1.54
USP40-207ENST00000450940 PSMD14O00487 310 aa24.67■■□□□ 1.54
USP40-207ENST00000450940 ATP2B4P23634 1241 aa24.67■■□□□ 1.54
USP40-207ENST00000450940 DOK7Q18PE1 504 aa24.67■■□□□ 1.54
USP40-207ENST00000450940 BCL2L13Q9BXK5 485 aa24.67■■□□□ 1.54
USP40-207ENST00000450940 PSME4Q14997 1843 aa24.67■■□□□ 1.54
USP40-207ENST00000450940 KCNQ5Q9NR82 932 aa24.66■■□□□ 1.54
USP40-207ENST00000450940 CNOT7Q9UIV1 285 aaKnown RBP24.66■■□□□ 1.54
USP40-207ENST00000450940 RPS12P25398 132 aaKnown RBP24.65■■□□□ 1.54
USP40-207ENST00000450940 TRPM7Q96QT4 1865 aa24.65■■□□□ 1.54
USP40-207ENST00000450940 ALDH1L1O75891 902 aa24.64■■□□□ 1.54
USP40-207ENST00000450940 ITGA6P23229 1130 aa24.64■■□□□ 1.54
USP40-207ENST00000450940 FOXO4P98177 505 aa24.64■■□□□ 1.54
USP40-207ENST00000450940 TRMT2AQ8IZ69 625 aaKnown RBP24.64■■□□□ 1.54
USP40-207ENST00000450940 ZC3H15Q8WU90 426 aaKnown RBP24.64■■□□□ 1.54
USP40-207ENST00000450940 ZBTB12Q9Y330 459 aaPredicted RBP24.64■■□□□ 1.54
USP40-207ENST00000450940 VIL1P09327 827 aaKnown RBP24.63■■□□□ 1.53
USP40-207ENST00000450940 IGHMBP2P38935 993 aaKnown RBP24.63■■□□□ 1.53
USP40-207ENST00000450940 HIRAP54198 1017 aaPredicted RBP24.63■■□□□ 1.53
USP40-207ENST00000450940 FAM161AQ3B820 660 aa24.63■■□□□ 1.53
USP40-207ENST00000450940 MRPL50Q8N5N7 158 aaKnown RBP24.63■■□□□ 1.53
USP40-207ENST00000450940 PCNTO95613 3336 aa24.63■■□□□ 1.53
USP40-207ENST00000450940 ZNF609O15014 1411 aa24.62■■□□□ 1.53
USP40-207ENST00000450940 H7C1D1 291 aa24.62■■□□□ 1.53
USP40-207ENST00000450940 GRM8O00222 908 aa24.62■■□□□ 1.53
USP40-207ENST00000450940 MICALL2Q8IY33 904 aa24.62■■□□□ 1.53
USP40-207ENST00000450940 CNTNAP1P78357 1384 aa24.62■■□□□ 1.53
USP40-207ENST00000450940 SHTN1A0MZ66 631 aa24.61■■□□□ 1.53
USP40-207ENST00000450940 WTIPA6NIX2 430 aaPredicted RBP24.61■■□□□ 1.53
USP40-207ENST00000450940 CCT4P50991 539 aaKnown RBP24.61■■□□□ 1.53
USP40-207ENST00000450940 MED23Q9ULK4 1368 aa24.61■■□□□ 1.53
USP40-207ENST00000450940 G3V3G9 751 aa24.6■■□□□ 1.53
USP40-207ENST00000450940 DCAF8Q5TAQ9 597 aa24.6■■□□□ 1.53
USP40-207ENST00000450940 PODNQ7Z5L7 613 aa24.6■■□□□ 1.53
USP40-207ENST00000450940 TRPM4Q8TD43 1214 aa24.6■■□□□ 1.53
USP40-207ENST00000450940 CDCA7LQ96GN5 454 aa24.6■■□□□ 1.53
USP40-207ENST00000450940 SRCIN1Q9C0H9 1055 aa24.6■■□□□ 1.53
USP40-207ENST00000450940 MKRN1Q9UHC7 482 aaKnown RBP24.6■■□□□ 1.53
USP40-207ENST00000450940 LEMD3Q9Y2U8 911 aa24.6■■□□□ 1.53
USP40-207ENST00000450940 ANKRD18BA2A2Z9 1011 aa24.59■■□□□ 1.53
USP40-207ENST00000450940 SSH1Q8WYL5 1049 aa24.59■■□□□ 1.53
USP40-207ENST00000450940 MPHOSPH8Q99549 860 aa24.59■■□□□ 1.53
USP40-207ENST00000450940 ANKRD2Q9GZV1 360 aa24.59■■□□□ 1.53
USP40-207ENST00000450940 PTPRCP08575 1304 aa24.59■■□□□ 1.53
USP40-207ENST00000450940 EPHA10Q5JZY3 1008 aa24.58■■□□□ 1.53
USP40-207ENST00000450940 SLC4A10Q6U841 1118 aa24.58■■□□□ 1.53
USP40-207ENST00000450940 ZNF646O15015 1829 aaPredicted RBP24.57■■□□□ 1.52
USP40-207ENST00000450940 RASSF10A6NK89 507 aa24.57■■□□□ 1.52
USP40-207ENST00000450940 FMR1Q06787 632 aaKnown RBP eCLIP24.57■■□□□ 1.52
USP40-207ENST00000450940 IFIT5Q13325 482 aaKnown RBP24.57■■□□□ 1.52
USP40-207ENST00000450940 ALDH1L2Q3SY69 923 aa24.57■■□□□ 1.52
USP40-207ENST00000450940 C9orf78Q9NZ63 289 aaPredicted RBP24.57■■□□□ 1.52
USP40-207ENST00000450940 UTYO14607 1347 aa24.57■■□□□ 1.52
USP40-207ENST00000450940 A0A1B0GUL6 1792 aa24.57■■□□□ 1.52
USP40-207ENST00000450940 POLR2AP24928 1970 aaKnown RBP24.56■■□□□ 1.52
USP40-207ENST00000450940 TRAF5O00463 557 aa24.56■■□□□ 1.52
USP40-207ENST00000450940 CST9Q5W186 159 aa24.56■■□□□ 1.52
USP40-207ENST00000450940 LMBR1LQ6UX01 489 aa24.56■■□□□ 1.52
USP40-207ENST00000450940 SAMD7Q7Z3H4 446 aa24.56■■□□□ 1.52
USP40-207ENST00000450940 AGBL3Q8NEM8 1001 aa24.56■■□□□ 1.52
USP40-207ENST00000450940 GMLQ99445 158 aa24.56■■□□□ 1.52
USP40-207ENST00000450940 RSBN1LQ6PCB5 846 aaPredicted RBP24.55■■□□□ 1.52
USP40-207ENST00000450940 ZNF804BA4D1E1 1349 aa24.55■■□□□ 1.52
USP40-207ENST00000450940 USP17L3A6NCW0 530 aa24.54■■□□□ 1.52
USP40-207ENST00000450940 USP17L4A6NCW7 530 aa24.54■■□□□ 1.52
USP40-207ENST00000450940 EGFRP00533 1210 aa24.54■■□□□ 1.52
USP40-207ENST00000450940 VEGFBP49765 207 aa24.54■■□□□ 1.52
USP40-207ENST00000450940 ZNF280AP59817 542 aaPredicted RBP24.54■■□□□ 1.52
USP40-207ENST00000450940 CHRNDQ07001 517 aa24.54■■□□□ 1.52
USP40-207ENST00000450940 DEFB115Q30KQ5 88 aa24.54■■□□□ 1.52
USP40-207ENST00000450940 CDC37L1Q7L3B6 337 aa24.54■■□□□ 1.52
USP40-207ENST00000450940 USP17L1Q7RTZ2 530 aa24.54■■□□□ 1.52
USP40-207ENST00000450940 TXNRD3Q86VQ6 643 aa24.54■■□□□ 1.52
USP40-207ENST00000450940 KAZALD1Q96I82 304 aa24.54■■□□□ 1.52
USP40-207ENST00000450940 GLIS2Q9BZE0 524 aaPredicted RBP24.54■■□□□ 1.52
USP40-207ENST00000450940 COA1Q9GZY4 146 aa24.54■■□□□ 1.52
USP40-207ENST00000450940 CT47B1P0C2W7 299 aaPredicted RBP24.53■■□□□ 1.52
USP40-207ENST00000450940 TBC1D10BQ4KMP7 808 aaPredicted RBP24.53■■□□□ 1.52
USP40-207ENST00000450940 NBPF7P0C2Y1 421 aaPredicted RBP24.52■■□□□ 1.52
USP40-207ENST00000450940 CCDC57Q2TAC2 916 aa24.51■■□□□ 1.51
Retrieved 100 of 20,778 RNA–protein pairs in 120.8 ms