RNA–Protein interactions for RNA: ENST00000450066.6

USP39-207, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2 BASIC

Gene USP39, Length 2,086 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-207ENST00000450066 XAGE2Q96GT9 111 aa17.29■□□□□ 0.36
USP39-207ENST00000450066 ABCC12Q96J65 1359 aa17.29■□□□□ 0.36
USP39-207ENST00000450066 IGHMBP2P38935 993 aaKnown RBP17.28■□□□□ 0.36
USP39-207ENST00000450066 CWC27Q6UX04 472 aaKnown RBP17.28■□□□□ 0.36
USP39-207ENST00000450066 CDC5LQ99459 802 aaKnown RBP17.28■□□□□ 0.36
USP39-207ENST00000450066 FSD1Q9BTV5 496 aa17.28■□□□□ 0.36
USP39-207ENST00000450066 IL25Q9H293 177 aa17.28■□□□□ 0.36
USP39-207ENST00000450066 ANO2Q9NQ90 1003 aa17.28■□□□□ 0.36
USP39-207ENST00000450066 NFIXQ14938 502 aa17.28■□□□□ 0.36
USP39-207ENST00000450066 CCDC158Q5M9N0 1113 aa17.28■□□□□ 0.36
USP39-207ENST00000450066 GORABQ5T7V8 394 aa17.28■□□□□ 0.36
USP39-207ENST00000450066 C3orf67Q6ZVT6 689 aa17.28■□□□□ 0.36
USP39-207ENST00000450066 TICAM2Q86XR7 235 aa17.28■□□□□ 0.36
USP39-207ENST00000450066 RFX7Q2KHR2 1363 aa17.28■□□□□ 0.36
USP39-207ENST00000450066 GYS1P13807 737 aa17.27■□□□□ 0.36
USP39-207ENST00000450066 SLC4A3P48751 1232 aa17.27■□□□□ 0.36
USP39-207ENST00000450066 NLRP3Q96P20 1036 aa17.27■□□□□ 0.36
USP39-207ENST00000450066 DNAJC2Q99543 621 aaKnown RBP17.27■□□□□ 0.36
USP39-207ENST00000450066 ADORA1P30542 326 aa17.27■□□□□ 0.35
USP39-207ENST00000450066 PUM3Q15397 648 aaKnown RBP17.27■□□□□ 0.35
USP39-207ENST00000450066 TBC1D2Q9BYX2 928 aa17.27■□□□□ 0.35
USP39-207ENST00000450066 IFIT1P09914 478 aaKnown RBP17.26■□□□□ 0.35
USP39-207ENST00000450066 EDC3Q96F86 508 aaKnown RBP17.26■□□□□ 0.35
USP39-207ENST00000450066 MCCP23508 829 aa17.25■□□□□ 0.35
USP39-207ENST00000450066 LPIN2Q92539 896 aa17.25■□□□□ 0.35
USP39-207ENST00000450066 SNX21Q969T3 373 aa17.25■□□□□ 0.35
USP39-207ENST00000450066 PAG1Q9NWQ8 432 aa17.25■□□□□ 0.35
USP39-207ENST00000450066 FGFR2P21802 821 aa17.25■□□□□ 0.35
USP39-207ENST00000450066 TTC39AQ5SRH9 613 aa17.25■□□□□ 0.35
USP39-207ENST00000450066 ERICH6Q7L0X2 663 aa17.25■□□□□ 0.35
USP39-207ENST00000450066 ANKRD18AQ8IVF6 992 aa17.25■□□□□ 0.35
USP39-207ENST00000450066 AKT1S1Q96B36 256 aa17.25■□□□□ 0.35
USP39-207ENST00000450066 ZNF512BQ96KM6 892 aaPredicted RBP17.25■□□□□ 0.35
USP39-207ENST00000450066 SNRKQ9NRH2 765 aa17.25■□□□□ 0.35
USP39-207ENST00000450066 NDUFB9Q9Y6M9 179 aa17.25■□□□□ 0.35
USP39-207ENST00000450066 RAD50Q92878 1312 aa17.25■□□□□ 0.35
USP39-207ENST00000450066 TNS1Q9HBL0 1735 aaKnown RBP17.24■□□□□ 0.35
USP39-207ENST00000450066 RABEP1Q15276 862 aa17.24■□□□□ 0.35
USP39-207ENST00000450066 KIAA1211Q6ZU35 1233 aa17.24■□□□□ 0.35
USP39-207ENST00000450066 KBTBD3Q8NAB2 608 aa17.24■□□□□ 0.35
USP39-207ENST00000450066 TFCP2L1Q9NZI6 479 aa17.24■□□□□ 0.35
USP39-207ENST00000450066 RGPD3A6NKT7 1758 aaPredicted RBP17.24■□□□□ 0.35
USP39-207ENST00000450066 RGPD4Q7Z3J3 1758 aa17.24■□□□□ 0.35
USP39-207ENST00000450066 SPEF2Q9C093 1822 aa17.24■□□□□ 0.35
USP39-207ENST00000450066 NMIQ13287 307 aaPredicted RBP17.24■□□□□ 0.35
USP39-207ENST00000450066 DDX46Q7L014 1031 aaKnown RBP17.24■□□□□ 0.35
USP39-207ENST00000450066 CASZ1Q86V15 1759 aa17.24■□□□□ 0.35
USP39-207ENST00000450066 LSG1Q9H089 658 aaKnown RBP17.24■□□□□ 0.35
USP39-207ENST00000450066 BSDC1Q9NW68 430 aaPredicted RBP17.24■□□□□ 0.35
USP39-207ENST00000450066 GOLIM4O00461 696 aa17.23■□□□□ 0.35
USP39-207ENST00000450066 NPHP1O15259 732 aa17.23■□□□□ 0.35
USP39-207ENST00000450066 TM4SF1P30408 202 aa17.23■□□□□ 0.35
USP39-207ENST00000450066 ANAPC15P60006 121 aa17.23■□□□□ 0.35
USP39-207ENST00000450066 ZNF827Q17R98 1081 aa17.23■□□□□ 0.35
USP39-207ENST00000450066 CNBD1Q8NA66 436 aa17.23■□□□□ 0.35
USP39-207ENST00000450066 HELBQ8NG08 1087 aaPredicted RBP17.23■□□□□ 0.35
USP39-207ENST00000450066 FAM227BQ96M60 508 aa17.23■□□□□ 0.35
USP39-207ENST00000450066 IL17RAQ96F46 866 aa17.22■□□□□ 0.35
USP39-207ENST00000450066 SLC5A1P13866 664 aa17.22■□□□□ 0.35
USP39-207ENST00000450066 CHRNDQ07001 517 aa17.22■□□□□ 0.35
USP39-207ENST00000450066 HSCBQ8IWL3 235 aa17.22■□□□□ 0.35
USP39-207ENST00000450066 COL4A1P02462 1669 aa17.22■□□□□ 0.35
USP39-207ENST00000450066 ARAP2Q8WZ64 1704 aa17.21■□□□□ 0.35
USP39-207ENST00000450066 A0A0D9SFI3 127 aa17.21■□□□□ 0.35
USP39-207ENST00000450066 HSPA4P34932 840 aa17.21■□□□□ 0.35
USP39-207ENST00000450066 FLAD1Q8NFF5 587 aa17.21■□□□□ 0.35
USP39-207ENST00000450066 TAF5LO75529 589 aa17.2■□□□□ 0.34
USP39-207ENST00000450066 PRR5LQ6MZQ0 368 aa17.2■□□□□ 0.34
USP39-207ENST00000450066 CCDC24Q8N4L8 307 aa17.2■□□□□ 0.34
USP39-207ENST00000450066 CELF1Q92879 486 aaKnown RBP17.2■□□□□ 0.34
USP39-207ENST00000450066 MED23Q9ULK4 1368 aa17.2■□□□□ 0.34
USP39-207ENST00000450066 RPS8P62241 208 aaKnown RBP17.2■□□□□ 0.34
USP39-207ENST00000450066 FKBP4Q02790 459 aaKnown RBP eCLIP17.2■□□□□ 0.34
USP39-207ENST00000450066 CCDC102BQ68D86 513 aa17.2■□□□□ 0.34
USP39-207ENST00000450066 SERPINB2P05120 415 aa17.19■□□□□ 0.34
USP39-207ENST00000450066 UQCRFS1P1P0C7P4 283 aa17.19■□□□□ 0.34
USP39-207ENST00000450066 ARID4AP29374 1257 aaPredicted RBP17.19■□□□□ 0.34
USP39-207ENST00000450066 SCARF1Q14162 830 aa17.19■□□□□ 0.34
USP39-207ENST00000450066 CCDC171Q6TFL3 1326 aa17.19■□□□□ 0.34
USP39-207ENST00000450066 LRRFIP1Q32MZ4 808 aaKnown RBP17.19■□□□□ 0.34
USP39-207ENST00000450066 PALD1Q9ULE6 856 aa17.19■□□□□ 0.34
USP39-207ENST00000450066 MINPP1Q9UNW1 487 aa17.19■□□□□ 0.34
USP39-207ENST00000450066 TNRC6CQ9HCJ0 1690 aaKnown RBP17.18■□□□□ 0.34
USP39-207ENST00000450066 MCAMP43121 646 aa17.18■□□□□ 0.34
USP39-207ENST00000450066 ST5P78524 1137 aa17.18■□□□□ 0.34
USP39-207ENST00000450066 PTH1RQ03431 593 aa17.18■□□□□ 0.34
USP39-207ENST00000450066 COL23A1Q86Y22 540 aaPredicted RBP17.18■□□□□ 0.34
USP39-207ENST00000450066 NLGN1Q8N2Q7 840 aa17.18■□□□□ 0.34
USP39-207ENST00000450066 ANTXR1Q9H6X2 564 aa17.18■□□□□ 0.34
USP39-207ENST00000450066 POLRMTO00411 1230 aaKnown RBP17.17■□□□□ 0.34
USP39-207ENST00000450066 ZAP70P43403 619 aa17.17■□□□□ 0.34
USP39-207ENST00000450066 PHKA1P46020 1223 aa17.17■□□□□ 0.34
USP39-207ENST00000450066 DDR1Q08345 913 aa17.17■□□□□ 0.34
USP39-207ENST00000450066 MCMDC2Q4G0Z9 681 aa17.17■□□□□ 0.34
USP39-207ENST00000450066 TAF1P21675 1872 aa17.17■□□□□ 0.34
USP39-207ENST00000450066 SNAP23O00161 211 aa17.17■□□□□ 0.34
USP39-207ENST00000450066 UBE4AQ14139 1066 aa17.17■□□□□ 0.34
USP39-207ENST00000450066 IL27Q8NEV9 243 aa17.17■□□□□ 0.34
USP39-207ENST00000450066 MAP4K1Q92918 833 aa17.17■□□□□ 0.34
USP39-207ENST00000450066 HELLSQ9NRZ9 838 aa17.17■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 36.9 ms