RNA–Protein interactions for RNA: ENST00000437340.5

CPNE1-216, Transcript of copine 1, humanhuman

TSL 1 (best)

Gene CPNE1, Length 1,755 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE1-216ENST00000437340 SYNE4Q8N205 404 aa30.87■■■□□ 2.53
CPNE1-216ENST00000437340 ANKRD18BA2A2Z9 1011 aa30.87■■■□□ 2.53
CPNE1-216ENST00000437340 ITGA6P23229 1130 aa30.87■■■□□ 2.53
CPNE1-216ENST00000437340 ZSWIM6Q9HCJ5 1215 aa30.87■■■□□ 2.53
CPNE1-216ENST00000437340 PAG1Q9NWQ8 432 aa30.87■■■□□ 2.53
CPNE1-216ENST00000437340 CCNL1Q9UK58 526 aaPredicted RBP30.87■■■□□ 2.53
CPNE1-216ENST00000437340 SPEF2Q9C093 1822 aa30.86■■■□□ 2.53
CPNE1-216ENST00000437340 MYH3P11055 1940 aa30.85■■■□□ 2.53
CPNE1-216ENST00000437340 GREM2Q9H772 168 aa30.85■■■□□ 2.53
CPNE1-216ENST00000437340 HMG20BQ9P0W2 317 aa30.85■■■□□ 2.53
CPNE1-216ENST00000437340 RIPOR2Q9Y4F9 1068 aa30.85■■■□□ 2.53
CPNE1-216ENST00000437340 TRAK2O60296 914 aa30.84■■■□□ 2.53
CPNE1-216ENST00000437340 TAF5LO75529 589 aa30.84■■■□□ 2.53
CPNE1-216ENST00000437340 CAMTA2O94983 1202 aa30.84■■■□□ 2.53
CPNE1-216ENST00000437340 CASTP20810 708 aaKnown RBP30.84■■■□□ 2.53
CPNE1-216ENST00000437340 PARP10Q53GL7 1025 aa30.84■■■□□ 2.53
CPNE1-216ENST00000437340 VPS53Q5VIR6 699 aa30.84■■■□□ 2.53
CPNE1-216ENST00000437340 ZNF589Q86UQ0 364 aaPredicted RBP30.84■■■□□ 2.53
CPNE1-216ENST00000437340 CCDC85AQ96PX6 553 aaPredicted RBP30.84■■■□□ 2.53
CPNE1-216ENST00000437340 SH3TC1Q8TE82 1336 aa30.84■■■□□ 2.53
CPNE1-216ENST00000437340 IFIT1P09914 478 aaKnown RBP30.84■■■□□ 2.53
CPNE1-216ENST00000437340 MCMDC2Q4G0Z9 681 aa30.84■■■□□ 2.53
CPNE1-216ENST00000437340 CCDC158Q5M9N0 1113 aa30.84■■■□□ 2.53
CPNE1-216ENST00000437340 DDX46Q7L014 1031 aaKnown RBP30.84■■■□□ 2.53
CPNE1-216ENST00000437340 GOLGA6L22H0YM25 854 aa30.83■■■□□ 2.53
CPNE1-216ENST00000437340 SLC27A2O14975 620 aa30.83■■■□□ 2.53
CPNE1-216ENST00000437340 PSMA5P28066 241 aa30.83■■■□□ 2.53
CPNE1-216ENST00000437340 TSGA10IPQ3SY00 556 aa30.83■■■□□ 2.53
CPNE1-216ENST00000437340 USPL1Q5W0Q7 1092 aa30.83■■■□□ 2.53
CPNE1-216ENST00000437340 JAKMIP1Q96N16 626 aaKnown RBP30.83■■■□□ 2.53
CPNE1-216ENST00000437340 CYP46A1Q9Y6A2 500 aa30.83■■■□□ 2.53
CPNE1-216ENST00000437340 NDUFB9Q9Y6M9 179 aa30.83■■■□□ 2.53
CPNE1-216ENST00000437340 CNTNAP4Q9C0A0 1308 aa30.83■■■□□ 2.53
CPNE1-216ENST00000437340 BCORQ6W2J9 1755 aa30.82■■■□□ 2.52
CPNE1-216ENST00000437340 AK2P54819 239 aa30.82■■■□□ 2.52
CPNE1-216ENST00000437340 LDHAL6AQ6ZMR3 332 aa30.82■■■□□ 2.52
CPNE1-216ENST00000437340 LIMCH1Q9UPQ0 1083 aa30.82■■■□□ 2.52
CPNE1-216ENST00000437340 C4BP0C0L5 1744 aa30.82■■■□□ 2.52
CPNE1-216ENST00000437340 RIC1Q4ADV7 1423 aa30.82■■■□□ 2.52
CPNE1-216ENST00000437340 GOLIM4O00461 696 aa30.82■■■□□ 2.52
CPNE1-216ENST00000437340 HELLSQ9NRZ9 838 aa30.82■■■□□ 2.52
CPNE1-216ENST00000437340 ABCC12Q96J65 1359 aa30.81■■■□□ 2.52
CPNE1-216ENST00000437340 RPAP1Q9BWH6 1393 aaPredicted RBP30.81■■■□□ 2.52
CPNE1-216ENST00000437340 BAG4O95429 457 aaKnown RBP30.81■■■□□ 2.52
CPNE1-216ENST00000437340 HSP90B1P14625 803 aaKnown RBP30.81■■■□□ 2.52
CPNE1-216ENST00000437340 SKOR2Q2VWA4 1001 aaPredicted RBP30.81■■■□□ 2.52
CPNE1-216ENST00000437340 ADCK5Q3MIX3 580 aa30.81■■■□□ 2.52
CPNE1-216ENST00000437340 NOL8Q76FK4 1167 aaKnown RBP30.81■■■□□ 2.52
CPNE1-216ENST00000437340 XAGE2Q96GT9 111 aa30.81■■■□□ 2.52
CPNE1-216ENST00000437340 RUFY3Q7L099 469 aa30.8■■■□□ 2.52
CPNE1-216ENST00000437340 UTP14AQ9BVJ6 771 aaKnown RBP30.8■■■□□ 2.52
CPNE1-216ENST00000437340 METTL24Q5JXM2 366 aa30.79■■■□□ 2.52
CPNE1-216ENST00000437340 GORABQ5T7V8 394 aa30.79■■■□□ 2.52
CPNE1-216ENST00000437340 PDRG1Q9NUG6 133 aa30.79■■■□□ 2.52
CPNE1-216ENST00000437340 TNS1Q9HBL0 1735 aaKnown RBP30.79■■■□□ 2.52
CPNE1-216ENST00000437340 LRRFIP1Q32MZ4 808 aaKnown RBP30.79■■■□□ 2.52
CPNE1-216ENST00000437340 TTC39AQ5SRH9 613 aa30.79■■■□□ 2.52
CPNE1-216ENST00000437340 SUSD4Q5VX71 490 aa30.79■■■□□ 2.52
CPNE1-216ENST00000437340 ATP2B3Q16720 1220 aa30.78■■■□□ 2.52
CPNE1-216ENST00000437340 PKP1Q13835 747 aa30.77■■■□□ 2.52
CPNE1-216ENST00000437340 ZSCAN31Q96LW9 406 aaPredicted RBP30.77■■■□□ 2.52
CPNE1-216ENST00000437340 CNNM1Q9NRU3 951 aa30.77■■■□□ 2.52
CPNE1-216ENST00000437340 ZNF652Q9Y2D9 606 aa30.77■■■□□ 2.52
CPNE1-216ENST00000437340 ZDHHC9Q9Y397 364 aa30.77■■■□□ 2.52
CPNE1-216ENST00000437340 U3KPZ7 1027 aaPredicted RBP30.77■■■□□ 2.52
CPNE1-216ENST00000437340 RGL2O15211 777 aa30.77■■■□□ 2.52
CPNE1-216ENST00000437340 KRT32Q14532 448 aa30.77■■■□□ 2.52
CPNE1-216ENST00000437340 RC3H1Q5TC82 1133 aaKnown RBP30.77■■■□□ 2.52
CPNE1-216ENST00000437340 LRRC4BQ9NT99 713 aa30.77■■■□□ 2.52
CPNE1-216ENST00000437340 LRP5O75197 1615 aa30.76■■■□□ 2.51
CPNE1-216ENST00000437340 ADORA1P30542 326 aa30.76■■■□□ 2.51
CPNE1-216ENST00000437340 ZMYM1Q5SVZ6 1142 aa30.76■■■□□ 2.51
CPNE1-216ENST00000437340 CLEC4GQ6UXB4 293 aa30.76■■■□□ 2.51
CPNE1-216ENST00000437340 VGLL2Q8N8G2 317 aa30.76■■■□□ 2.51
CPNE1-216ENST00000437340 ALDH8A1Q9H2A2 487 aaPredicted RBP30.76■■■□□ 2.51
CPNE1-216ENST00000437340 ZNF512BQ96KM6 892 aaPredicted RBP30.75■■■□□ 2.51
CPNE1-216ENST00000437340 SH2B1Q9NRF2 756 aaPredicted RBP30.75■■■□□ 2.51
CPNE1-216ENST00000437340 SCN7AQ01118 1682 aa30.75■■■□□ 2.51
CPNE1-216ENST00000437340 RNF113AO15541 343 aaKnown RBP30.74■■■□□ 2.51
CPNE1-216ENST00000437340 BRD1O95696 1058 aa30.74■■■□□ 2.51
CPNE1-216ENST00000437340 ZSCAN21Q9Y5A6 473 aaPredicted RBP30.74■■■□□ 2.51
CPNE1-216ENST00000437340 PDE8BO95263 885 aa30.73■■■□□ 2.51
CPNE1-216ENST00000437340 CPA1P15085 419 aa30.73■■■□□ 2.51
CPNE1-216ENST00000437340 SEC62Q99442 399 aaKnown RBP30.73■■■□□ 2.51
CPNE1-216ENST00000437340 NIP7Q9Y221 180 aaKnown RBP eCLIP30.73■■■□□ 2.51
CPNE1-216ENST00000437340 RTL9Q8NET4 1388 aa30.73■■■□□ 2.51
CPNE1-216ENST00000437340 C4AP0C0L4 1744 aa30.72■■■□□ 2.51
CPNE1-216ENST00000437340 MROH5Q6ZUA9 1318 aa30.72■■■□□ 2.51
CPNE1-216ENST00000437340 BLOC1S2Q6QNY1 142 aa30.72■■■□□ 2.51
CPNE1-216ENST00000437340 DSCC1Q9BVC3 393 aa30.72■■■□□ 2.51
CPNE1-216ENST00000437340 NTSR2O95665 410 aa30.71■■■□□ 2.51
CPNE1-216ENST00000437340 ZFYP08048 801 aaPredicted RBP30.71■■■□□ 2.51
CPNE1-216ENST00000437340 ANKRD1Q15327 319 aa30.71■■■□□ 2.51
CPNE1-216ENST00000437340 SMIM5Q71RC9 77 aa30.71■■■□□ 2.51
CPNE1-216ENST00000437340 UBR3Q6ZT12 1888 aa30.71■■■□□ 2.51
CPNE1-216ENST00000437340 GNPATO15228 680 aa30.71■■■□□ 2.51
CPNE1-216ENST00000437340 CCDC129Q6ZRS4 1044 aa30.71■■■□□ 2.51
CPNE1-216ENST00000437340 RPS6KA4O75676 772 aa30.7■■■□□ 2.51
CPNE1-216ENST00000437340 CHGBP05060 677 aa30.7■■■□□ 2.51
CPNE1-216ENST00000437340 HCLS1P14317 486 aaPredicted RBP30.7■■■□□ 2.51
Retrieved 100 of 20,778 RNA–protein pairs in 42.7 ms