RNA–Protein interactions for RNA: ENST00000427724.6

TCOF1-204, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 5

Gene TCOF1, Length 4,272 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-204ENST00000427724 BLOC1S2Q6QNY1 142 aa12.46□□□□□ -0.41
TCOF1-204ENST00000427724 RHPN1Q8TCX5 695 aa12.46□□□□□ -0.41
TCOF1-204ENST00000427724 BICC1Q9H694 974 aaKnown RBP12.46□□□□□ -0.41
TCOF1-204ENST00000427724 RBM27Q9P2N5 1060 aaKnown RBP12.46□□□□□ -0.41
TCOF1-204ENST00000427724 RPS6KA4O75676 772 aa12.46□□□□□ -0.42
TCOF1-204ENST00000427724 ZHX3Q9H4I2 956 aa12.46□□□□□ -0.42
TCOF1-204ENST00000427724 PICK1Q9NRD5 415 aa12.46□□□□□ -0.42
TCOF1-204ENST00000427724 MCM9Q9NXL9 1143 aa12.46□□□□□ -0.42
TCOF1-204ENST00000427724 SEC63Q9UGP8 760 aaKnown RBP12.46□□□□□ -0.42
TCOF1-204ENST00000427724 U3KPZ7 1027 aaPredicted RBP12.46□□□□□ -0.42
TCOF1-204ENST00000427724 DIP2CQ9Y2E4 1556 aa12.46□□□□□ -0.42
TCOF1-204ENST00000427724 CTCFLQ8NI51 663 aaPredicted RBP12.45□□□□□ -0.42
TCOF1-204ENST00000427724 CHL1O00533 1208 aa12.45□□□□□ -0.42
TCOF1-204ENST00000427724 CDK5RAP3Q96JB5 506 aa12.45□□□□□ -0.42
TCOF1-204ENST00000427724 GDPD2Q9HCC8 539 aa12.45□□□□□ -0.42
TCOF1-204ENST00000427724 KRT18P05783 430 aaKnown RBP12.45□□□□□ -0.42
TCOF1-204ENST00000427724 CYP46A1Q9Y6A2 500 aa12.45□□□□□ -0.42
TCOF1-204ENST00000427724 KDM5AP29375 1690 aaKnown RBP12.45□□□□□ -0.42
TCOF1-204ENST00000427724 LARP6Q9BRS8 491 aaKnown RBP12.45□□□□□ -0.42
TCOF1-204ENST00000427724 BECN2A8MW95 431 aa12.44□□□□□ -0.42
TCOF1-204ENST00000427724 SSBP05455 408 aaKnown RBP eCLIP12.44□□□□□ -0.42
TCOF1-204ENST00000427724 RAB3GAP1Q15042 981 aa12.44□□□□□ -0.42
TCOF1-204ENST00000427724 ZYXQ15942 572 aaKnown RBP12.44□□□□□ -0.42
TCOF1-204ENST00000427724 TEX11Q8IYF3 940 aa12.44□□□□□ -0.42
TCOF1-204ENST00000427724 MARCH10Q8NA82 808 aaPredicted RBP12.44□□□□□ -0.42
TCOF1-204ENST00000427724 ZSCAN21Q9Y5A6 473 aaPredicted RBP12.44□□□□□ -0.42
TCOF1-204ENST00000427724 SLC4A4Q9Y6R1 1079 aa12.44□□□□□ -0.42
TCOF1-204ENST00000427724 KLHL40Q2TBA0 621 aa12.44□□□□□ -0.42
TCOF1-204ENST00000427724 TTLL5Q6EMB2 1281 aa12.44□□□□□ -0.42
TCOF1-204ENST00000427724 SYNMO15061 1565 aa12.44□□□□□ -0.42
TCOF1-204ENST00000427724 CLTCQ00610 1675 aaKnown RBP12.44□□□□□ -0.42
TCOF1-204ENST00000427724 USP19O94966 1318 aa12.44□□□□□ -0.42
TCOF1-204ENST00000427724 IFIT3O14879 490 aaKnown RBP12.44□□□□□ -0.42
TCOF1-204ENST00000427724 SLC27A3Q5K4L6 730 aa12.44□□□□□ -0.42
TCOF1-204ENST00000427724 RNF41Q9H4P4 317 aaPredicted RBP12.44□□□□□ -0.42
TCOF1-204ENST00000427724 DBNDD1Q9H9R9 158 aa12.44□□□□□ -0.42
TCOF1-204ENST00000427724 PRAMEF22A3QJZ6 481 aa12.43□□□□□ -0.42
TCOF1-204ENST00000427724 CCDC93Q567U6 631 aa12.43□□□□□ -0.42
TCOF1-204ENST00000427724 OTUD7AQ8TE49 926 aaPredicted RBP12.43□□□□□ -0.42
TCOF1-204ENST00000427724 JAKMIP1Q96N16 626 aaKnown RBP12.43□□□□□ -0.42
TCOF1-204ENST00000427724 SPATA31A1Q5TZJ5 1347 aa12.43□□□□□ -0.42
TCOF1-204ENST00000427724 PLCG2P16885 1265 aa12.43□□□□□ -0.42
TCOF1-204ENST00000427724 RBM25P49756 843 aaKnown RBP12.43□□□□□ -0.42
TCOF1-204ENST00000427724 HMGN5P82970 282 aaKnown RBP12.43□□□□□ -0.42
TCOF1-204ENST00000427724 TFCP2Q12800 502 aa12.43□□□□□ -0.42
TCOF1-204ENST00000427724 PLEKHM2Q8IWE5 1019 aa12.43□□□□□ -0.42
TCOF1-204ENST00000427724 ANKRD44Q8N8A2 993 aa12.43□□□□□ -0.42
TCOF1-204ENST00000427724 ARHGEF1Q92888 912 aaKnown RBP12.43□□□□□ -0.42
TCOF1-204ENST00000427724 PRM3Q9NNZ6 103 aa12.43□□□□□ -0.42
TCOF1-204ENST00000427724 TTF2Q9UNY4 1162 aaKnown RBP12.43□□□□□ -0.42
TCOF1-204ENST00000427724 WDR33Q9C0J8 1336 aaKnown RBP12.43□□□□□ -0.42
TCOF1-204ENST00000427724 MFSD14BQ5SR56 506 aa12.43□□□□□ -0.42
TCOF1-204ENST00000427724 HOMER1Q86YM7 354 aa12.43□□□□□ -0.42
TCOF1-204ENST00000427724 ARHGEF40Q8TER5 1519 aa12.43□□□□□ -0.42
TCOF1-204ENST00000427724 GOLGA6L19H0YKK7 550 aa12.42□□□□□ -0.42
TCOF1-204ENST00000427724 HOXB7P09629 217 aa12.42□□□□□ -0.42
TCOF1-204ENST00000427724 SCNN1DP51172 638 aa12.42□□□□□ -0.42
TCOF1-204ENST00000427724 TMEM87AQ8NBN3 555 aa12.42□□□□□ -0.42
TCOF1-204ENST00000427724 TAOK3Q9H2K8 898 aa12.42□□□□□ -0.42
TCOF1-204ENST00000427724 GLI2P10070 1586 aa12.42□□□□□ -0.42
TCOF1-204ENST00000427724 MAP3K15Q6ZN16 1313 aa12.42□□□□□ -0.42
TCOF1-204ENST00000427724 EYA2O00167 538 aa12.42□□□□□ -0.42
TCOF1-204ENST00000427724 TSPY3P0CV98 308 aa12.42□□□□□ -0.42
TCOF1-204ENST00000427724 TSPY8P0CW00 308 aa12.42□□□□□ -0.42
TCOF1-204ENST00000427724 SOS2Q07890 1332 aaPredicted RBP12.42□□□□□ -0.42
TCOF1-204ENST00000427724 A0A0G2JLW4 131 aa12.42□□□□□ -0.42
TCOF1-204ENST00000427724 CEBPZQ03701 1054 aaKnown RBP12.42□□□□□ -0.42
TCOF1-204ENST00000427724 TNIP1Q15025 636 aa12.42□□□□□ -0.42
TCOF1-204ENST00000427724 SMCR8Q8TEV9 937 aaPredicted RBP12.42□□□□□ -0.42
TCOF1-204ENST00000427724 ATG3Q9NT62 314 aa12.42□□□□□ -0.42
TCOF1-204ENST00000427724 CSADQ9Y600 493 aa12.42□□□□□ -0.42
TCOF1-204ENST00000427724 AATKQ6ZMQ8 1374 aa12.42□□□□□ -0.42
TCOF1-204ENST00000427724 GCKRQ14397 625 aa12.42□□□□□ -0.42
TCOF1-204ENST00000427724 GIGYF2Q6Y7W6 1299 aaKnown RBP12.42□□□□□ -0.42
TCOF1-204ENST00000427724 DCTPP1Q9H773 170 aa12.42□□□□□ -0.42
TCOF1-204ENST00000427724 BABAM1Q9NWV8 329 aa12.42□□□□□ -0.42
TCOF1-204ENST00000427724 SAP30BPQ9UHR5 308 aaKnown RBP12.42□□□□□ -0.42
TCOF1-204ENST00000427724 CROCC2H7BZ55 1655 aa12.42□□□□□ -0.42
TCOF1-204ENST00000427724 SHROOM2Q13796 1616 aa12.41□□□□□ -0.42
TCOF1-204ENST00000427724 PPEF1O14829 653 aaPredicted RBP12.41□□□□□ -0.42
TCOF1-204ENST00000427724 PPP1R12BO60237 982 aaPredicted RBP12.41□□□□□ -0.42
TCOF1-204ENST00000427724 MAGEB6Q8N7X4 407 aa12.41□□□□□ -0.42
TCOF1-204ENST00000427724 CUL5Q93034 780 aa12.41□□□□□ -0.42
TCOF1-204ENST00000427724 DENND2AQ9ULE3 1009 aa12.41□□□□□ -0.42
TCOF1-204ENST00000427724 IGSF1Q8N6C5 1336 aa12.41□□□□□ -0.42
TCOF1-204ENST00000427724 AGLP35573 1532 aa12.41□□□□□ -0.42
TCOF1-204ENST00000427724 MYCP01106 439 aaPredicted RBP12.41□□□□□ -0.42
TCOF1-204ENST00000427724 PRPF40BQ6NWY9 871 aaKnown RBP12.41□□□□□ -0.42
TCOF1-204ENST00000427724 SPC24Q8NBT2 197 aa12.41□□□□□ -0.42
TCOF1-204ENST00000427724 POLR1AO95602 1720 aaPredicted RBP12.41□□□□□ -0.42
TCOF1-204ENST00000427724 MAGEB6P1A0A0J9YX57 407 aa12.4□□□□□ -0.42
TCOF1-204ENST00000427724 ZSCAN23Q3MJ62 389 aa12.4□□□□□ -0.42
TCOF1-204ENST00000427724 SASS6Q6UVJ0 657 aa12.4□□□□□ -0.42
TCOF1-204ENST00000427724 MFSD6Q6ZSS7 791 aa12.4□□□□□ -0.42
TCOF1-204ENST00000427724 ANTXR1Q9H6X2 564 aa12.4□□□□□ -0.42
TCOF1-204ENST00000427724 GPBP1L1Q9HC44 474 aaPredicted RBP12.4□□□□□ -0.42
TCOF1-204ENST00000427724 SBNO2Q9Y2G9 1366 aa12.4□□□□□ -0.42
TCOF1-204ENST00000427724 PUM3Q15397 648 aaKnown RBP12.4□□□□□ -0.42
TCOF1-204ENST00000427724 WDR66Q8TBY9 1149 aa12.4□□□□□ -0.42
TCOF1-204ENST00000427724 IVNS1ABPQ9Y6Y0 642 aa12.4□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 67.9 ms