RNA–Protein interactions for RNA: ENST00000425518.5

SMARCC1-202, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 1, humanhuman

TSL 2

Gene SMARCC1, Length 3,827 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCC1-202ENST00000425518 NCOA5Q9HCD5 579 aaKnown RBP8.86□□□□□ -0.99
SMARCC1-202ENST00000425518 PRDM4Q9UKN5 801 aa8.86□□□□□ -0.99
SMARCC1-202ENST00000425518 A0A087WZG4 1122 aa8.85□□□□□ -0.99
SMARCC1-202ENST00000425518 PTPN12Q05209 780 aaKnown RBP8.85□□□□□ -0.99
SMARCC1-202ENST00000425518 CCDC144BQ3MJ40 725 aa8.85□□□□□ -0.99
SMARCC1-202ENST00000425518 CCDC144CPQ8IYA2 1237 aa8.85□□□□□ -0.99
SMARCC1-202ENST00000425518 TDRD7Q8NHU6 1098 aaKnown RBP8.85□□□□□ -0.99
SMARCC1-202ENST00000425518 ZNF496Q96IT1 587 aaPredicted RBP8.85□□□□□ -0.99
SMARCC1-202ENST00000425518 SNRKQ9NRH2 765 aa8.85□□□□□ -0.99
SMARCC1-202ENST00000425518 UTYO14607 1347 aa8.85□□□□□ -0.99
SMARCC1-202ENST00000425518 CACNA1FO60840 1977 aa8.85□□□□□ -0.99
SMARCC1-202ENST00000425518 GOLIM4O00461 696 aa8.85□□□□□ -0.99
SMARCC1-202ENST00000425518 NAA30Q147X3 362 aaPredicted RBP8.85□□□□□ -0.99
SMARCC1-202ENST00000425518 TSGA10IPQ3SY00 556 aa8.85□□□□□ -0.99
SMARCC1-202ENST00000425518 PLA2G4DQ86XP0 818 aa8.85□□□□□ -0.99
SMARCC1-202ENST00000425518 ALDH8A1Q9H2A2 487 aaPredicted RBP8.85□□□□□ -0.99
SMARCC1-202ENST00000425518 PXDNQ92626 1479 aa8.85□□□□□ -0.99
SMARCC1-202ENST00000425518 ME1P48163 572 aa8.85□□□□□ -0.99
SMARCC1-202ENST00000425518 CCDC73Q6ZRK6 1079 aa8.85□□□□□ -0.99
SMARCC1-202ENST00000425518 C11orf57Q6ZUT1 292 aaPredicted RBP8.85□□□□□ -0.99
SMARCC1-202ENST00000425518 ZSCAN16Q9H4T2 348 aaPredicted RBP8.85□□□□□ -0.99
SMARCC1-202ENST00000425518 COPRSQ9NQ92 184 aa8.85□□□□□ -0.99
SMARCC1-202ENST00000425518 COL15A1P39059 1388 aa8.85□□□□□ -0.99
SMARCC1-202ENST00000425518 IGSF3O75054 1194 aa8.84□□□□□ -0.99
SMARCC1-202ENST00000425518 TIMM10P62072 90 aa8.84□□□□□ -0.99
SMARCC1-202ENST00000425518 USPL1Q5W0Q7 1092 aa8.84□□□□□ -0.99
SMARCC1-202ENST00000425518 LMBR1LQ6UX01 489 aa8.84□□□□□ -0.99
SMARCC1-202ENST00000425518 STOX1Q6ZVD7 989 aa8.84□□□□□ -0.99
SMARCC1-202ENST00000425518 TTC5Q8N0Z6 440 aa8.84□□□□□ -0.99
SMARCC1-202ENST00000425518 KLHL34Q8N239 644 aa8.84□□□□□ -0.99
SMARCC1-202ENST00000425518 KINO60870 393 aaKnown RBP8.84□□□□□ -0.99
SMARCC1-202ENST00000425518 CSB-PGBD3P0DP91 1061 aa8.84□□□□□ -0.99
SMARCC1-202ENST00000425518 USP28Q96RU2 1077 aa8.84□□□□□ -0.99
SMARCC1-202ENST00000425518 TRMT1Q9NXH9 659 aaKnown RBP8.84□□□□□ -0.99
SMARCC1-202ENST00000425518 A0A0G2JLW4 131 aa8.84□□□□□ -0.99
SMARCC1-202ENST00000425518 PTPDC1A2A3K4 754 aa8.84□□□□□ -0.99
SMARCC1-202ENST00000425518 CCDC112Q8NEF3 446 aa8.84□□□□□ -0.99
SMARCC1-202ENST00000425518 RBM43Q6ZSC3 357 aaKnown RBP8.83□□□□□ -1
SMARCC1-202ENST00000425518 DHX32Q7L7V1 743 aaKnown RBP8.83□□□□□ -1
SMARCC1-202ENST00000425518 SDF4Q9BRK5 362 aa8.83□□□□□ -1
SMARCC1-202ENST00000425518 SLC52A2Q9HAB3 445 aa8.83□□□□□ -1
SMARCC1-202ENST00000425518 RFX5P48382 616 aaPredicted RBP8.83□□□□□ -1
SMARCC1-202ENST00000425518 ANKLE2Q86XL3 938 aa8.83□□□□□ -1
SMARCC1-202ENST00000425518 FSIP1Q8NA03 581 aa8.83□□□□□ -1
SMARCC1-202ENST00000425518 NSUN7Q8NE18 718 aaKnown RBP8.83□□□□□ -1
SMARCC1-202ENST00000425518 GOLPH3LQ9H4A5 285 aa8.83□□□□□ -1
SMARCC1-202ENST00000425518 HEG1Q9ULI3 1381 aa8.83□□□□□ -1
SMARCC1-202ENST00000425518 ZSCAN20P17040 1043 aaPredicted RBP8.83□□□□□ -1
SMARCC1-202ENST00000425518 OTUD7BQ6GQQ9 843 aa8.83□□□□□ -1
SMARCC1-202ENST00000425518 ARHGAP30Q7Z6I6 1101 aaPredicted RBP8.83□□□□□ -1
SMARCC1-202ENST00000425518 HAUS7Q99871 368 aa8.83□□□□□ -1
SMARCC1-202ENST00000425518 PFKFB2O60825 505 aa8.82□□□□□ -1
SMARCC1-202ENST00000425518 SKILP12757 684 aa8.82□□□□□ -1
SMARCC1-202ENST00000425518 IQCB1Q15051 598 aa8.82□□□□□ -1
SMARCC1-202ENST00000425518 SF3A1Q15459 793 aaKnown RBP8.82□□□□□ -1
SMARCC1-202ENST00000425518 STX1AQ16623 288 aa8.82□□□□□ -1
SMARCC1-202ENST00000425518 KBTBD3Q8NAB2 608 aa8.82□□□□□ -1
SMARCC1-202ENST00000425518 RCOR1Q9UKL0 485 aa8.82□□□□□ -1
SMARCC1-202ENST00000425518 ZNF609O15014 1411 aa8.82□□□□□ -1
SMARCC1-202ENST00000425518 SMTNL1A8MU46 457 aa8.82□□□□□ -1
SMARCC1-202ENST00000425518 CTDNEP1O95476 244 aa8.82□□□□□ -1
SMARCC1-202ENST00000425518 SNRPA1P09661 255 aaKnown RBP8.82□□□□□ -1
SMARCC1-202ENST00000425518 ADD1P35611 737 aaKnown RBP8.82□□□□□ -1
SMARCC1-202ENST00000425518 NCBP1Q09161 790 aaKnown RBP8.82□□□□□ -1
SMARCC1-202ENST00000425518 CEP135Q66GS9 1140 aa8.82□□□□□ -1
SMARCC1-202ENST00000425518 KRT28Q7Z3Y7 464 aa8.82□□□□□ -1
SMARCC1-202ENST00000425518 RAB11FIP4Q86YS3 637 aa8.82□□□□□ -1
SMARCC1-202ENST00000425518 LRRC8AQ8IWT6 810 aa8.82□□□□□ -1
SMARCC1-202ENST00000425518 ZNF396Q96N95 335 aaPredicted RBP8.82□□□□□ -1
SMARCC1-202ENST00000425518 FMNL2Q96PY5 1086 aa8.82□□□□□ -1
SMARCC1-202ENST00000425518 NOL12Q9UGY1 213 aaKnown RBP eCLIP8.82□□□□□ -12e-6■□□□□ 8.6
SMARCC1-202ENST00000425518 V9GYY5 206 aaPredicted RBP8.82□□□□□ -1
SMARCC1-202ENST00000425518 ARHGAP23Q9P227 1491 aa8.82□□□□□ -1
SMARCC1-202ENST00000425518 USP27XA6NNY8 438 aa8.82□□□□□ -1
SMARCC1-202ENST00000425518 CTIFO43310 598 aaKnown RBP8.82□□□□□ -1
SMARCC1-202ENST00000425518 TATP17735 454 aaPredicted RBP8.82□□□□□ -1
SMARCC1-202ENST00000425518 ZRSR1Q15695 479 aaKnown RBP8.82□□□□□ -1
SMARCC1-202ENST00000425518 TTLL5Q6EMB2 1281 aa8.82□□□□□ -1
SMARCC1-202ENST00000425518 ANKRD7Q92527 254 aa8.82□□□□□ -1
SMARCC1-202ENST00000425518 NPHP1O15259 732 aa8.81□□□□□ -1
SMARCC1-202ENST00000425518 POLR3DP05423 398 aaPredicted RBP8.81□□□□□ -1
SMARCC1-202ENST00000425518 AOPEPQ8N6M6 819 aa8.81□□□□□ -1
SMARCC1-202ENST00000425518 SMARCC2Q8TAQ2 1214 aa8.81□□□□□ -1
SMARCC1-202ENST00000425518 GPHNQ9NQX3 736 aaPredicted RBP8.81□□□□□ -1
SMARCC1-202ENST00000425518 PAG1Q9NWQ8 432 aa8.81□□□□□ -1
SMARCC1-202ENST00000425518 A0A1B0GVL5 298 aa8.81□□□□□ -1
SMARCC1-202ENST00000425518 CCDC69A6NI79 296 aa8.81□□□□□ -1
SMARCC1-202ENST00000425518 CTAGE5O15320 804 aa8.81□□□□□ -1
SMARCC1-202ENST00000425518 CAVIN2O95810 425 aa8.81□□□□□ -1
SMARCC1-202ENST00000425518 HMGB1P09429 215 aaKnown RBP8.81□□□□□ -1
SMARCC1-202ENST00000425518 HAND2P61296 217 aa8.81□□□□□ -1
SMARCC1-202ENST00000425518 ZNF594Q96JF6 807 aaPredicted RBP8.81□□□□□ -1
SMARCC1-202ENST00000425518 ANO10Q9NW15 660 aa8.81□□□□□ -1
SMARCC1-202ENST00000425518 E7EWF7 191 aa8.81□□□□□ -1
SMARCC1-202ENST00000425518 FKBP4Q02790 459 aaKnown RBP eCLIP8.81□□□□□ -1
SMARCC1-202ENST00000425518 DMTNQ08495 405 aa8.81□□□□□ -1
SMARCC1-202ENST00000425518 PTPN14Q15678 1187 aa8.81□□□□□ -1
SMARCC1-202ENST00000425518 NAA16Q6N069 864 aaPredicted RBP8.81□□□□□ -1
SMARCC1-202ENST00000425518 LLPHQ9BRT6 129 aaKnown RBP8.81□□□□□ -1
SMARCC1-202ENST00000425518 PAXBP1Q9Y5B6 917 aa8.81□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 43.3 ms