RNA–Protein interactions for RNA: ENST00000415083.6

SS18-203, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SS18, Length 3,414 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-203ENST00000415083 CCDC144BQ3MJ40 725 aa11.72□□□□□ -0.53
SS18-203ENST00000415083 LMOD2Q6P5Q4 547 aa11.72□□□□□ -0.53
SS18-203ENST00000415083 ANKRD13DQ6ZTN6 518 aa11.72□□□□□ -0.53
SS18-203ENST00000415083 CCDC144CPQ8IYA2 1237 aa11.72□□□□□ -0.53
SS18-203ENST00000415083 BRF1Q92994 677 aa11.72□□□□□ -0.53
SS18-203ENST00000415083 HAUS7Q99871 368 aa11.72□□□□□ -0.53
SS18-203ENST00000415083 ABCC6O95255 1503 aa11.71□□□□□ -0.53
SS18-203ENST00000415083 KRT85P78386 507 aa11.71□□□□□ -0.53
SS18-203ENST00000415083 HIP1O00291 1037 aa11.71□□□□□ -0.54
SS18-203ENST00000415083 FAM200AQ8TCP9 573 aa11.71□□□□□ -0.54
SS18-203ENST00000415083 CABLES1Q8TDN4 633 aa11.71□□□□□ -0.54
SS18-203ENST00000415083 CLSTN2Q9H4D0 955 aa11.71□□□□□ -0.54
SS18-203ENST00000415083 MYO5AQ9Y4I1 1855 aaKnown RBP11.71□□□□□ -0.54
SS18-203ENST00000415083 SALL1Q9NSC2 1324 aa11.71□□□□□ -0.54
SS18-203ENST00000415083 TMEM94Q12767 1356 aa11.71□□□□□ -0.54
SS18-203ENST00000415083 KCNJ4P48050 445 aa11.7□□□□□ -0.54
SS18-203ENST00000415083 NUP62CLQ9H1M0 184 aa11.7□□□□□ -0.54
SS18-203ENST00000415083 NEDD4P46934 1319 aa11.7□□□□□ -0.54
SS18-203ENST00000415083 PSMA5P28066 241 aa11.7□□□□□ -0.54
SS18-203ENST00000415083 EXOSC10Q01780 885 aaKnown RBP11.7□□□□□ -0.54
SS18-203ENST00000415083 SNW1Q13573 536 aaKnown RBP11.7□□□□□ -0.54
SS18-203ENST00000415083 MAP3K11Q16584 847 aa11.7□□□□□ -0.54
SS18-203ENST00000415083 NSUN7Q8NE18 718 aaKnown RBP11.7□□□□□ -0.54
SS18-203ENST00000415083 NEK1Q96PY6 1258 aa11.7□□□□□ -0.54
SS18-203ENST00000415083 PRDM4Q9UKN5 801 aa11.7□□□□□ -0.54
SS18-203ENST00000415083 KCPQ6ZWJ8 1503 aa11.7□□□□□ -0.54
SS18-203ENST00000415083 DDX58O95786 925 aaKnown RBP11.7□□□□□ -0.54
SS18-203ENST00000415083 HMGN5P82970 282 aaKnown RBP11.7□□□□□ -0.54
SS18-203ENST00000415083 PLCB2Q00722 1185 aa11.7□□□□□ -0.54
SS18-203ENST00000415083 C11orf57Q6ZUT1 292 aaPredicted RBP11.7□□□□□ -0.54
SS18-203ENST00000415083 GPHNQ9NQX3 736 aaPredicted RBP11.7□□□□□ -0.54
SS18-203ENST00000415083 CCDC192P0DO97 292 aa11.69□□□□□ -0.54
SS18-203ENST00000415083 ARID5BQ14865 1188 aa11.69□□□□□ -0.54
SS18-203ENST00000415083 IQCB1Q15051 598 aa11.69□□□□□ -0.54
SS18-203ENST00000415083 KLHL34Q8N239 644 aa11.69□□□□□ -0.54
SS18-203ENST00000415083 SPATA32Q96LK8 384 aa11.69□□□□□ -0.54
SS18-203ENST00000415083 DNAJC2Q99543 621 aaKnown RBP11.69□□□□□ -0.54
SS18-203ENST00000415083 AGXT2Q9BYV1 514 aa11.69□□□□□ -0.54
SS18-203ENST00000415083 HMG20BQ9P0W2 317 aa11.69□□□□□ -0.54
SS18-203ENST00000415083 CCDC9Q9Y3X0 531 aaKnown RBP11.69□□□□□ -0.54
SS18-203ENST00000415083 TNKS1BP1Q9C0C2 1729 aaKnown RBP11.69□□□□□ -0.54
SS18-203ENST00000415083 ECM29Q5VYK3 1845 aa11.69□□□□□ -0.54
SS18-203ENST00000415083 DNTTIP2Q5QJE6 756 aaKnown RBP11.69□□□□□ -0.54
SS18-203ENST00000415083 C4AP0C0L4 1744 aa11.69□□□□□ -0.54
SS18-203ENST00000415083 C4BP0C0L5 1744 aa11.69□□□□□ -0.54
SS18-203ENST00000415083 TIMM10P62072 90 aa11.69□□□□□ -0.54
SS18-203ENST00000415083 LRRC24Q50LG9 513 aa11.69□□□□□ -0.54
SS18-203ENST00000415083 TTLL7Q6ZT98 887 aa11.69□□□□□ -0.54
SS18-203ENST00000415083 TDRD7Q8NHU6 1098 aaKnown RBP11.69□□□□□ -0.54
SS18-203ENST00000415083 CHMP4AQ9BY43 222 aa11.69□□□□□ -0.54
SS18-203ENST00000415083 DNAJC25Q9H1X3 360 aa11.69□□□□□ -0.54
SS18-203ENST00000415083 BCL2L12Q9HB09 334 aa11.69□□□□□ -0.54
SS18-203ENST00000415083 NCOA5Q9HCD5 579 aaKnown RBP11.69□□□□□ -0.54
SS18-203ENST00000415083 RIOK3O14730 519 aaKnown RBP11.68□□□□□ -0.54
SS18-203ENST00000415083 PRDM10Q9NQV6 1147 aa11.68□□□□□ -0.54
SS18-203ENST00000415083 RFX7Q2KHR2 1363 aa11.68□□□□□ -0.54
SS18-203ENST00000415083 H7C1W4 665 aa11.68□□□□□ -0.54
SS18-203ENST00000415083 FDPSP14324 419 aaKnown RBP11.68□□□□□ -0.54
SS18-203ENST00000415083 ZNF75DP51815 510 aa11.68□□□□□ -0.54
SS18-203ENST00000415083 APOBRQ0VD83 1088 aa11.68□□□□□ -0.54
SS18-203ENST00000415083 CHRNA2Q15822 529 aa11.68□□□□□ -0.54
SS18-203ENST00000415083 ATP2B3Q16720 1220 aa11.68□□□□□ -0.54
SS18-203ENST00000415083 LMBR1LQ6UX01 489 aa11.68□□□□□ -0.54
SS18-203ENST00000415083 ZNF594Q96JF6 807 aaPredicted RBP11.68□□□□□ -0.54
SS18-203ENST00000415083 SH3TC1Q8TE82 1336 aa11.68□□□□□ -0.54
SS18-203ENST00000415083 TOGARAM1Q9Y4F4 1720 aa11.68□□□□□ -0.54
SS18-203ENST00000415083 A0A087WZG4 1122 aa11.67□□□□□ -0.54
SS18-203ENST00000415083 PFKFB2O60825 505 aa11.67□□□□□ -0.54
SS18-203ENST00000415083 FOSBP53539 338 aa11.67□□□□□ -0.54
SS18-203ENST00000415083 ANKRD1Q15327 319 aa11.67□□□□□ -0.54
SS18-203ENST00000415083 MCMDC2Q4G0Z9 681 aa11.67□□□□□ -0.54
SS18-203ENST00000415083 CHST3Q7LGC8 479 aa11.67□□□□□ -0.54
SS18-203ENST00000415083 CCDC186Q7Z3E2 898 aa11.67□□□□□ -0.54
SS18-203ENST00000415083 ENGASEQ8NFI3 743 aa11.67□□□□□ -0.54
SS18-203ENST00000415083 ERCC4Q92889 916 aaPredicted RBP11.67□□□□□ -0.54
SS18-203ENST00000415083 PRIMPOLQ96LW4 560 aa11.67□□□□□ -0.54
SS18-203ENST00000415083 M0R2C6 588 aa11.67□□□□□ -0.54
SS18-203ENST00000415083 TTLL5Q6EMB2 1281 aa11.67□□□□□ -0.54
SS18-203ENST00000415083 PUS3Q9BZE2 481 aaKnown RBP11.67□□□□□ -0.54
SS18-203ENST00000415083 TNMDQ9H2S6 317 aa11.67□□□□□ -0.54
SS18-203ENST00000415083 NLRP2Q9NX02 1062 aa11.67□□□□□ -0.54
SS18-203ENST00000415083 AKAP11Q9UKA4 1901 aa11.67□□□□□ -0.54
SS18-203ENST00000415083 SNRPA1P09661 255 aaKnown RBP11.67□□□□□ -0.54
SS18-203ENST00000415083 KBTBD3Q8NAB2 608 aa11.67□□□□□ -0.54
SS18-203ENST00000415083 CACTINQ8WUQ7 758 aaKnown RBP11.67□□□□□ -0.54
SS18-203ENST00000415083 CEBPZQ03701 1054 aaKnown RBP11.66□□□□□ -0.54
SS18-203ENST00000415083 RNF20Q5VTR2 975 aa11.66□□□□□ -0.54
SS18-203ENST00000415083 USP28Q96RU2 1077 aa11.66□□□□□ -0.54
SS18-203ENST00000415083 SCAND2PQ9GZW5 306 aaPredicted RBP11.66□□□□□ -0.54
SS18-203ENST00000415083 MAST3O60307 1309 aa11.66□□□□□ -0.54
SS18-203ENST00000415083 CTIFO43310 598 aaKnown RBP11.66□□□□□ -0.54
SS18-203ENST00000415083 NEXNQ0ZGT2 675 aa11.66□□□□□ -0.54
SS18-203ENST00000415083 NAA30Q147X3 362 aaPredicted RBP11.66□□□□□ -0.54
SS18-203ENST00000415083 ZSCAN25Q6NSZ9 544 aa11.66□□□□□ -0.54
SS18-203ENST00000415083 MYH7P12883 1935 aa11.65□□□□□ -0.54
SS18-203ENST00000415083 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP11.65□□□□□ -0.54
SS18-203ENST00000415083 USP27XA6NNY8 438 aa11.65□□□□□ -0.54
SS18-203ENST00000415083 GOLIM4O00461 696 aa11.65□□□□□ -0.54
SS18-203ENST00000415083 HSPD1P10809 573 aaKnown RBP11.65□□□□□ -0.54
SS18-203ENST00000415083 PDCP20941 246 aa11.65□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms