RNA–Protein interactions for RNA: ENST00000411767.6

PTPN13-202, Transcript of protein tyrosine phosphatase, non-receptor type 13, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PTPN13, Length 8,119 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN13-202ENST00000411767 NUDCD3Q8IVD9 361 aa5.18□□□□□ -1.58
PTPN13-202ENST00000411767 ATP11CQ8NB49 1132 aa5.18□□□□□ -1.58
PTPN13-202ENST00000411767 NDEL1Q9GZM8 345 aa5.18□□□□□ -1.58
PTPN13-202ENST00000411767 ATP8A1Q9Y2Q0 1164 aa5.18□□□□□ -1.58
PTPN13-202ENST00000411767 COG6Q9Y2V7 657 aa5.18□□□□□ -1.58
PTPN13-202ENST00000411767 CCDC171Q6TFL3 1326 aa5.18□□□□□ -1.58
PTPN13-202ENST00000411767 PALM2-AKAP2B1ALY0 433 aaPredicted RBP5.18□□□□□ -1.58
PTPN13-202ENST00000411767 NOP56O00567 594 aaKnown RBP5.18□□□□□ -1.58
PTPN13-202ENST00000411767 PPP1R12AO14974 1030 aaPredicted RBP5.18□□□□□ -1.58
PTPN13-202ENST00000411767 FLOT1O75955 427 aa5.18□□□□□ -1.58
PTPN13-202ENST00000411767 RAPGEF3O95398 923 aa5.18□□□□□ -1.58
PTPN13-202ENST00000411767 APOEP02649 317 aa5.18□□□□□ -1.58
PTPN13-202ENST00000411767 KRT4P19013 534 aa5.18□□□□□ -1.58
PTPN13-202ENST00000411767 EVCP57679 992 aa5.18□□□□□ -1.58
PTPN13-202ENST00000411767 MRPL28Q13084 256 aaKnown RBP5.18□□□□□ -1.58
PTPN13-202ENST00000411767 MAP3K11Q16584 847 aa5.18□□□□□ -1.58
PTPN13-202ENST00000411767 CCDC62Q6P9F0 684 aa5.18□□□□□ -1.58
PTPN13-202ENST00000411767 ST13P4Q8IZP2 240 aaPredicted RBP5.18□□□□□ -1.58
PTPN13-202ENST00000411767 ZHX3Q9H4I2 956 aa5.18□□□□□ -1.58
PTPN13-202ENST00000411767 SYTL2Q9HCH5 934 aa5.18□□□□□ -1.58
PTPN13-202ENST00000411767 STXBP3O00186 592 aa5.18□□□□□ -1.58
PTPN13-202ENST00000411767 DIXDC1Q155Q3 683 aa5.18□□□□□ -1.58
PTPN13-202ENST00000411767 CLUL1Q15846 466 aa5.18□□□□□ -1.58
PTPN13-202ENST00000411767 SH3GL2Q99962 352 aa5.18□□□□□ -1.58
PTPN13-202ENST00000411767 CENPKQ9BS16 269 aa5.18□□□□□ -1.58
PTPN13-202ENST00000411767 TRIM4Q9C037 500 aa5.18□□□□□ -1.58
PTPN13-202ENST00000411767 ZSCAN16Q9H4T2 348 aaPredicted RBP5.18□□□□□ -1.58
PTPN13-202ENST00000411767 SYNPO2Q9UMS6 1093 aa5.18□□□□□ -1.58
PTPN13-202ENST00000411767 CCDC78A2IDD5 438 aa5.18□□□□□ -1.58
PTPN13-202ENST00000411767 MSH5O43196 834 aa5.18□□□□□ -1.58
PTPN13-202ENST00000411767 RNF40O75150 1001 aa5.18□□□□□ -1.58
PTPN13-202ENST00000411767 DEAF1O75398 565 aaPredicted RBP5.18□□□□□ -1.58
PTPN13-202ENST00000411767 KRT6AP02538 564 aa5.18□□□□□ -1.58
PTPN13-202ENST00000411767 KRT6BP04259 564 aa5.18□□□□□ -1.58
PTPN13-202ENST00000411767 KRT6CP48668 564 aa5.18□□□□□ -1.58
PTPN13-202ENST00000411767 PPFIA1Q13136 1202 aa5.18□□□□□ -1.58
PTPN13-202ENST00000411767 PSMD2Q13200 908 aa5.18□□□□□ -1.58
PTPN13-202ENST00000411767 NFKBIBQ15653 356 aa5.18□□□□□ -1.58
PTPN13-202ENST00000411767 PLCD3Q8N3E9 789 aa5.18□□□□□ -1.58
PTPN13-202ENST00000411767 EFCAB8A8MWE9 144 aa5.18□□□□□ -1.58
PTPN13-202ENST00000411767 SERPINB6P35237 376 aa5.18□□□□□ -1.58
PTPN13-202ENST00000411767 PPP1R21Q6ZMI0 780 aa5.18□□□□□ -1.58
PTPN13-202ENST00000411767 LRRC27Q9C0I9 530 aa5.18□□□□□ -1.58
PTPN13-202ENST00000411767 ATPIF1Q9UII2 106 aa5.18□□□□□ -1.58
PTPN13-202ENST00000411767 ROCK2O75116 1388 aaKnown RBP5.17□□□□□ -1.58
PTPN13-202ENST00000411767 SNW1Q13573 536 aaKnown RBP5.17□□□□□ -1.58
PTPN13-202ENST00000411767 PSMD6Q15008 389 aa5.17□□□□□ -1.58
PTPN13-202ENST00000411767 STX19Q8N4C7 294 aa5.17□□□□□ -1.58
PTPN13-202ENST00000411767 SREK1IP1Q8N9Q2 155 aaPredicted RBP5.17□□□□□ -1.58
PTPN13-202ENST00000411767 MRPL40Q9NQ50 206 aaKnown RBP5.17□□□□□ -1.58
PTPN13-202ENST00000411767 CCNB3Q8WWL7 1395 aa5.17□□□□□ -1.58
PTPN13-202ENST00000411767 MCM2P49736 904 aa5.17□□□□□ -1.58
PTPN13-202ENST00000411767 STX3Q13277 289 aa5.17□□□□□ -1.58
PTPN13-202ENST00000411767 NUTM1Q86Y26 1132 aa5.17□□□□□ -1.58
PTPN13-202ENST00000411767 ZNF287Q9HBT7 754 aa5.17□□□□□ -1.58
PTPN13-202ENST00000411767 BRPF3Q9ULD4 1205 aa5.17□□□□□ -1.58
PTPN13-202ENST00000411767 NBNO60934 754 aa5.17□□□□□ -1.58
PTPN13-202ENST00000411767 PHLDB3Q6NSJ2 640 aa5.17□□□□□ -1.58
PTPN13-202ENST00000411767 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP5.17□□□□□ -1.58
PTPN13-202ENST00000411767 S100BP04271 92 aaPredicted RBP5.17□□□□□ -1.58
PTPN13-202ENST00000411767 PHBP35232 272 aa5.17□□□□□ -1.58
PTPN13-202ENST00000411767 ARHGAP44Q17R89 818 aa5.17□□□□□ -1.58
PTPN13-202ENST00000411767 ATAD3BQ5T9A4 648 aa5.17□□□□□ -1.58
PTPN13-202ENST00000411767 POTEEQ6S8J3 1075 aa5.17□□□□□ -1.58
PTPN13-202ENST00000411767 B4GALNT4Q76KP1 1039 aa5.17□□□□□ -1.58
PTPN13-202ENST00000411767 PODNQ7Z5L7 613 aa5.17□□□□□ -1.58
PTPN13-202ENST00000411767 AHI1Q8N157 1196 aa5.17□□□□□ -1.58
PTPN13-202ENST00000411767 KRT222Q8N1A0 295 aa5.17□□□□□ -1.58
PTPN13-202ENST00000411767 KIF18AQ8NI77 898 aa5.17□□□□□ -1.58
PTPN13-202ENST00000411767 ZNF428Q96B54 188 aa5.17□□□□□ -1.58
PTPN13-202ENST00000411767 RMDN2Q96LZ7 410 aa5.17□□□□□ -1.58
PTPN13-202ENST00000411767 SELENOOQ9BVL4 669 aa5.17□□□□□ -1.58
PTPN13-202ENST00000411767 PNMA2Q9UL42 364 aa5.17□□□□□ -1.58
PTPN13-202ENST00000411767 EIF3BP55884 814 aaKnown RBP5.17□□□□□ -1.58
PTPN13-202ENST00000411767 CUL3Q13618 768 aa5.17□□□□□ -1.58
PTPN13-202ENST00000411767 TBCCQ15814 346 aa5.17□□□□□ -1.58
PTPN13-202ENST00000411767 MPRIPQ6WCQ1 1025 aa5.17□□□□□ -1.58
PTPN13-202ENST00000411767 EFCAB13Q8IY85 973 aa5.17□□□□□ -1.58
PTPN13-202ENST00000411767 RNF10Q8N5U6 811 aaKnown RBP5.17□□□□□ -1.58
PTPN13-202ENST00000411767 EFHD2Q96C19 240 aaPredicted RBP5.17□□□□□ -1.58
PTPN13-202ENST00000411767 CDKL5O76039 1030 aa5.17□□□□□ -1.58
PTPN13-202ENST00000411767 RASSF2P50749 326 aa5.17□□□□□ -1.58
PTPN13-202ENST00000411767 KRT76Q01546 638 aa5.17□□□□□ -1.58
PTPN13-202ENST00000411767 GDAP1L1Q96MZ0 367 aa5.17□□□□□ -1.58
PTPN13-202ENST00000411767 EBAG9O00559 213 aa5.16□□□□□ -1.58
PTPN13-202ENST00000411767 ZNF76P36508 570 aa5.16□□□□□ -1.58
PTPN13-202ENST00000411767 NRG3P56975 720 aa5.16□□□□□ -1.58
PTPN13-202ENST00000411767 LAMC2Q13753 1193 aa5.16□□□□□ -1.58
PTPN13-202ENST00000411767 STK38Q15208 465 aa5.16□□□□□ -1.58
PTPN13-202ENST00000411767 INF2Q27J81 1249 aa5.16□□□□□ -1.58
PTPN13-202ENST00000411767 ZNF569Q5MCW4 686 aa5.16□□□□□ -1.58
PTPN13-202ENST00000411767 C16orf62Q7Z3J2 963 aa5.16□□□□□ -1.58
PTPN13-202ENST00000411767 TRMT44Q8IYL2 757 aaKnown RBP5.16□□□□□ -1.58
PTPN13-202ENST00000411767 C18orf25Q96B23 403 aaPredicted RBP5.16□□□□□ -1.58
PTPN13-202ENST00000411767 COG4Q9H9E3 785 aa5.16□□□□□ -1.58
PTPN13-202ENST00000411767 TFIP11Q9UBB9 837 aaKnown RBP5.16□□□□□ -1.58
PTPN13-202ENST00000411767 TBC1D2BQ9UPU7 963 aa5.16□□□□□ -1.58
PTPN13-202ENST00000411767 OCM2P0CE71 109 aa5.16□□□□□ -1.58
PTPN13-202ENST00000411767 OCMP0CE72 109 aaPredicted RBP5.16□□□□□ -1.58
PTPN13-202ENST00000411767 HSD3B2P26439 372 aa5.16□□□□□ -1.58
Retrieved 100 of 20,778 RNA–protein pairs in 42.9 ms