RNA–Protein interactions for RNA: ENST00000405805.5

HMGB1-206, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 4,199 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-206ENST00000405805 A0A1B0GVL5 298 aa13.9□□□□□ -0.19
HMGB1-206ENST00000405805 RXRAP19793 462 aa13.9□□□□□ -0.19
HMGB1-206ENST00000405805 MNAT1P51948 309 aa13.9□□□□□ -0.19
HMGB1-206ENST00000405805 SETD1BQ9UPS6 1966 aaKnown RBP13.9□□□□□ -0.19
HMGB1-206ENST00000405805 LMOD1P29536 600 aaPredicted RBP13.89□□□□□ -0.19
HMGB1-206ENST00000405805 TFCP2Q12800 502 aa13.89□□□□□ -0.19
HMGB1-206ENST00000405805 SLFNL1Q499Z3 407 aa13.89□□□□□ -0.19
HMGB1-206ENST00000405805 URI1O94763 535 aaPredicted RBP13.89□□□□□ -0.19
HMGB1-206ENST00000405805 HSPA2P54652 639 aa13.89□□□□□ -0.19
HMGB1-206ENST00000405805 KRT32Q14532 448 aa13.89□□□□□ -0.19
HMGB1-206ENST00000405805 NFATC2IPQ8NCF5 419 aa13.89□□□□□ -0.19
HMGB1-206ENST00000405805 CDK12Q9NYV4 1490 aaPredicted RBP13.89□□□□□ -0.19
HMGB1-206ENST00000405805 PTPN21Q16825 1174 aa13.89□□□□□ -0.19
HMGB1-206ENST00000405805 AMOTQ4VCS5 1084 aa13.89□□□□□ -0.19
HMGB1-206ENST00000405805 LMBR1LQ6UX01 489 aa13.89□□□□□ -0.19
HMGB1-206ENST00000405805 LEO1Q8WVC0 666 aaPredicted RBP13.89□□□□□ -0.19
HMGB1-206ENST00000405805 IDH1O75874 414 aaKnown RBP13.88□□□□□ -0.19
HMGB1-206ENST00000405805 IFIT1P09914 478 aaKnown RBP13.88□□□□□ -0.19
HMGB1-206ENST00000405805 SFPQP23246 707 aaKnown RBP eCLIP13.88□□□□□ -0.19
HMGB1-206ENST00000405805 DBNDD2Q9BQY9 259 aa13.88□□□□□ -0.19
HMGB1-206ENST00000405805 CHGBP05060 677 aa13.88□□□□□ -0.19
HMGB1-206ENST00000405805 SIGLEC1Q9BZZ2 1709 aa13.88□□□□□ -0.19
HMGB1-206ENST00000405805 NPHP3Q7Z494 1330 aa13.88□□□□□ -0.19
HMGB1-206ENST00000405805 KIAA0232Q92628 1395 aa13.88□□□□□ -0.19
HMGB1-206ENST00000405805 MYO3AQ8NEV4 1616 aa13.88□□□□□ -0.19
HMGB1-206ENST00000405805 TTC39AQ5SRH9 613 aa13.88□□□□□ -0.19
HMGB1-206ENST00000405805 C8orf76Q96K31 380 aa13.88□□□□□ -0.19
HMGB1-206ENST00000405805 SRRTQ9BXP5 876 aaKnown RBP13.88□□□□□ -0.19
HMGB1-206ENST00000405805 RASSF4Q9H2L5 321 aa13.88□□□□□ -0.19
HMGB1-206ENST00000405805 EIF2AK3Q9NZJ5 1116 aaKnown RBP13.88□□□□□ -0.19
HMGB1-206ENST00000405805 ARID5BQ14865 1188 aa13.87□□□□□ -0.19
HMGB1-206ENST00000405805 KIF18AQ8NI77 898 aa13.87□□□□□ -0.19
HMGB1-206ENST00000405805 TMEM131LA2VDJ0 1609 aa13.87□□□□□ -0.19
HMGB1-206ENST00000405805 PREX1Q8TCU6 1659 aa13.87□□□□□ -0.19
HMGB1-206ENST00000405805 CLEC17AQ6ZS10 378 aa13.87□□□□□ -0.19
HMGB1-206ENST00000405805 ANO10Q9NW15 660 aa13.87□□□□□ -0.19
HMGB1-206ENST00000405805 CEP126Q9P2H0 1117 aa13.87□□□□□ -0.19
HMGB1-206ENST00000405805 ARHGEF28Q8N1W1 1705 aaKnown RBP13.87□□□□□ -0.19
HMGB1-206ENST00000405805 CCDC69A6NI79 296 aa13.87□□□□□ -0.19
HMGB1-206ENST00000405805 LMAN1P49257 510 aa13.87□□□□□ -0.19
HMGB1-206ENST00000405805 EIF4A1P60842 406 aaKnown RBP13.87□□□□□ -0.19
HMGB1-206ENST00000405805 AKAP4Q5JQC9 854 aa13.87□□□□□ -0.19
HMGB1-206ENST00000405805 ANKRD13DQ6ZTN6 518 aa13.87□□□□□ -0.19
HMGB1-206ENST00000405805 IGSF1Q8N6C5 1336 aa13.87□□□□□ -0.19
HMGB1-206ENST00000405805 NCOA3Q9Y6Q9 1424 aa13.87□□□□□ -0.19
HMGB1-206ENST00000405805 PI4K2BQ8TCG2 481 aa13.86□□□□□ -0.19
HMGB1-206ENST00000405805 GOLGA8BA8MQT2 603 aa13.86□□□□□ -0.19
HMGB1-206ENST00000405805 CT47A1Q5JQC4 288 aaPredicted RBP13.86□□□□□ -0.19
HMGB1-206ENST00000405805 ZNF589Q86UQ0 364 aaPredicted RBP13.86□□□□□ -0.19
HMGB1-206ENST00000405805 CPLX3Q8WVH0 158 aa13.86□□□□□ -0.19
HMGB1-206ENST00000405805 STAP2Q9UGK3 403 aa13.86□□□□□ -0.19
HMGB1-206ENST00000405805 BEND3Q5T5X7 828 aa13.86□□□□□ -0.19
HMGB1-206ENST00000405805 UTP14CQ5TAP6 766 aaKnown RBP13.86□□□□□ -0.19
HMGB1-206ENST00000405805 KLHL10Q6JEL2 608 aa13.86□□□□□ -0.19
HMGB1-206ENST00000405805 LINS1Q8NG48 757 aa13.86□□□□□ -0.19
HMGB1-206ENST00000405805 PRDM4Q9UKN5 801 aa13.86□□□□□ -0.19
HMGB1-206ENST00000405805 RGS12O14924 1447 aa13.86□□□□□ -0.19
HMGB1-206ENST00000405805 OLFM4Q6UX06 510 aa13.86□□□□□ -0.19
HMGB1-206ENST00000405805 ORC3Q9UBD5 711 aaPredicted RBP13.86□□□□□ -0.19
HMGB1-206ENST00000405805 ARHGEF10O15013 1369 aa13.85□□□□□ -0.19
HMGB1-206ENST00000405805 TTC41PQ6P2S7 1318 aa13.85□□□□□ -0.19
HMGB1-206ENST00000405805 PTPDC1A2A3K4 754 aa13.85□□□□□ -0.19
HMGB1-206ENST00000405805 RPS6KB1P23443 525 aa13.85□□□□□ -0.19
HMGB1-206ENST00000405805 NUP133Q8WUM0 1156 aa13.85□□□□□ -0.19
HMGB1-206ENST00000405805 NEURL4Q96JN8 1562 aa13.85□□□□□ -0.19
HMGB1-206ENST00000405805 STX1AQ16623 288 aa13.85□□□□□ -0.19
HMGB1-206ENST00000405805 MICU3Q86XE3 530 aa13.85□□□□□ -0.19
HMGB1-206ENST00000405805 MED14O60244 1454 aa13.85□□□□□ -0.19
HMGB1-206ENST00000405805 RNMTO43148 476 aaKnown RBP13.84□□□□□ -0.19
HMGB1-206ENST00000405805 SLC3A2P08195 630 aaKnown RBP13.84□□□□□ -0.19
HMGB1-206ENST00000405805 CCDC57Q2TAC2 916 aa13.84□□□□□ -0.19
HMGB1-206ENST00000405805 CCDC158Q5M9N0 1113 aa13.84□□□□□ -0.19
HMGB1-206ENST00000405805 CCDC191Q8NCU4 936 aa13.84□□□□□ -0.19
HMGB1-206ENST00000405805 UBXN4Q92575 508 aa13.84□□□□□ -0.19
HMGB1-206ENST00000405805 ZNF594Q96JF6 807 aaPredicted RBP13.84□□□□□ -0.19
HMGB1-206ENST00000405805 ZNF75DP51815 510 aa13.84□□□□□ -0.19
HMGB1-206ENST00000405805 TAF6LQ9Y6J9 622 aa13.84□□□□□ -0.19
HMGB1-206ENST00000405805 U3KPZ7 1027 aaPredicted RBP13.84□□□□□ -0.19
HMGB1-206ENST00000405805 RIMBP3CA6NJZ7 1639 aa13.84□□□□□ -0.19
HMGB1-206ENST00000405805 RIMBP3BA6NNM3 1639 aa13.84□□□□□ -0.19
HMGB1-206ENST00000405805 RIMBP3Q9UFD9 1639 aa13.84□□□□□ -0.19
HMGB1-206ENST00000405805 KAT6BQ8WYB5 2073 aa13.84□□□□□ -0.19
HMGB1-206ENST00000405805 COL3A1P02461 1466 aaPredicted RBP13.84□□□□□ -0.19
HMGB1-206ENST00000405805 AKAP17AQ02040 695 aaKnown RBP13.84□□□□□ -0.19
HMGB1-206ENST00000405805 GTF3C6Q969F1 213 aa13.84□□□□□ -0.19
HMGB1-206ENST00000405805 IFNKQ9P0W0 207 aa13.84□□□□□ -0.19
HMGB1-206ENST00000405805 MYO5BQ9ULV0 1848 aa13.84□□□□□ -0.19
HMGB1-206ENST00000405805 ATP10DQ9P241 1426 aa13.83□□□□□ -0.19
HMGB1-206ENST00000405805 GPTP24298 496 aa13.83□□□□□ -0.19
HMGB1-206ENST00000405805 SNW1Q13573 536 aaKnown RBP13.83□□□□□ -0.19
HMGB1-206ENST00000405805 SYT10Q6XYQ8 523 aa13.83□□□□□ -0.19
HMGB1-206ENST00000405805 DNAI1Q9UI46 699 aa13.83□□□□□ -0.19
HMGB1-206ENST00000405805 MRVI1Q9Y6F6 885 aa13.83□□□□□ -0.19
HMGB1-206ENST00000405805 TERF1P54274 439 aa13.83□□□□□ -0.2
HMGB1-206ENST00000405805 ZSWIM6Q9HCJ5 1215 aa13.83□□□□□ -0.2
HMGB1-206ENST00000405805 CNNM1Q9NRU3 951 aa13.83□□□□□ -0.2
HMGB1-206ENST00000405805 KLF18A0A0U1RQI7 1052 aa13.83□□□□□ -0.2
HMGB1-206ENST00000405805 TMCO3Q6UWJ1 677 aa13.83□□□□□ -0.2
HMGB1-206ENST00000405805 OGFRQ9NZT2 677 aa13.83□□□□□ -0.2
HMGB1-206ENST00000405805 KIF24Q5T7B8 1368 aa13.83□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 52.8 ms