RNA–Protein interactions for RNA: ENST00000398452.6

SKA1-202, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SKA1, Length 979 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-202ENST00000398452 DDX46Q7L014 1031 aaKnown RBP17.52■□□□□ 0.4
SKA1-202ENST00000398452 RPGRQ92834 1020 aaKnown RBP17.52■□□□□ 0.4
SKA1-202ENST00000398452 MPHOSPH8Q99549 860 aa17.52■□□□□ 0.4
SKA1-202ENST00000398452 GREM2Q9H772 168 aa17.52■□□□□ 0.4
SKA1-202ENST00000398452 PA2G4Q9UQ80 394 aaKnown RBP17.52■□□□□ 0.4
SKA1-202ENST00000398452 FARP1Q9Y4F1 1045 aaPredicted RBP17.52■□□□□ 0.4
SKA1-202ENST00000398452 IL15P40933 162 aaPredicted RBP17.51■□□□□ 0.39
SKA1-202ENST00000398452 CLASRPQ8N2M8 674 aaKnown RBP17.51■□□□□ 0.39
SKA1-202ENST00000398452 CCDC24Q8N4L8 307 aa17.51■□□□□ 0.39
SKA1-202ENST00000398452 LNPKQ9C0E8 428 aa17.51■□□□□ 0.39
SKA1-202ENST00000398452 CNNM1Q9NRU3 951 aa17.51■□□□□ 0.39
SKA1-202ENST00000398452 ABCC12Q96J65 1359 aa17.51■□□□□ 0.39
SKA1-202ENST00000398452 EYA2O00167 538 aa17.5■□□□□ 0.39
SKA1-202ENST00000398452 PDE6BP35913 854 aa17.5■□□□□ 0.39
SKA1-202ENST00000398452 RGS3P49796 1198 aa17.5■□□□□ 0.39
SKA1-202ENST00000398452 PTPN12Q05209 780 aaKnown RBP17.5■□□□□ 0.39
SKA1-202ENST00000398452 LDHAL6AQ6ZMR3 332 aa17.5■□□□□ 0.39
SKA1-202ENST00000398452 ANKRD18AQ8IVF6 992 aa17.5■□□□□ 0.39
SKA1-202ENST00000398452 RHPN1Q8TCX5 695 aa17.5■□□□□ 0.39
SKA1-202ENST00000398452 CIAO1O76071 339 aa17.49■□□□□ 0.39
SKA1-202ENST00000398452 RFX5P48382 616 aaPredicted RBP17.49■□□□□ 0.39
SKA1-202ENST00000398452 KLHDC4Q8TBB5 520 aa17.49■□□□□ 0.39
SKA1-202ENST00000398452 RBM17Q96I25 401 aaKnown RBP17.49■□□□□ 0.39
SKA1-202ENST00000398452 RTL9Q8NET4 1388 aa17.49■□□□□ 0.39
SKA1-202ENST00000398452 GOLGB1Q14789 3259 aaKnown RBP17.48■□□□□ 0.39
SKA1-202ENST00000398452 RIC1Q4ADV7 1423 aa17.48■□□□□ 0.39
SKA1-202ENST00000398452 ZNF594Q96JF6 807 aaPredicted RBP17.48■□□□□ 0.39
SKA1-202ENST00000398452 BRIP1Q9BX63 1249 aa17.48■□□□□ 0.39
SKA1-202ENST00000398452 CEP126Q9P2H0 1117 aa17.48■□□□□ 0.39
SKA1-202ENST00000398452 IFIT2P09913 472 aaKnown RBP17.47■□□□□ 0.39
SKA1-202ENST00000398452 GPATCH3Q96I76 525 aa17.47■□□□□ 0.39
SKA1-202ENST00000398452 MYH3P11055 1940 aa17.47■□□□□ 0.39
SKA1-202ENST00000398452 LAMB2P55268 1798 aa17.46■□□□□ 0.39
SKA1-202ENST00000398452 METTL24Q5JXM2 366 aa17.46■□□□□ 0.39
SKA1-202ENST00000398452 ZNF526Q8TF50 670 aaPredicted RBP17.46■□□□□ 0.39
SKA1-202ENST00000398452 TMX4Q9H1E5 349 aaPredicted RBP17.46■□□□□ 0.39
SKA1-202ENST00000398452 IL1RAPL2Q9NP60 686 aa17.46■□□□□ 0.39
SKA1-202ENST00000398452 AKAP2Q9Y2D5 859 aa17.46■□□□□ 0.39
SKA1-202ENST00000398452 A0A0G2JLW4 131 aa17.45■□□□□ 0.38
SKA1-202ENST00000398452 SMARCA5O60264 1052 aaPredicted RBP17.45■□□□□ 0.38
SKA1-202ENST00000398452 SEC31BQ9NQW1 1179 aa17.45■□□□□ 0.38
SKA1-202ENST00000398452 MROH5Q6ZUA9 1318 aa17.45■□□□□ 0.38
SKA1-202ENST00000398452 GABBR2O75899 941 aa17.44■□□□□ 0.38
SKA1-202ENST00000398452 C1QTNF8P60827 252 aa17.44■□□□□ 0.38
SKA1-202ENST00000398452 RPS8P62241 208 aaKnown RBP17.44■□□□□ 0.38
SKA1-202ENST00000398452 DDX60Q8IY21 1712 aaKnown RBP17.44■□□□□ 0.38
SKA1-202ENST00000398452 H0YIN7 160 aa17.43■□□□□ 0.38
SKA1-202ENST00000398452 TFCP2Q12800 502 aa17.43■□□□□ 0.38
SKA1-202ENST00000398452 GRAPQ13588 217 aa17.43■□□□□ 0.38
SKA1-202ENST00000398452 LRRC24Q50LG9 513 aa17.43■□□□□ 0.38
SKA1-202ENST00000398452 C3orf67Q6ZVT6 689 aa17.43■□□□□ 0.38
SKA1-202ENST00000398452 AACSQ86V21 672 aa17.43■□□□□ 0.38
SKA1-202ENST00000398452 GRAPLQ8TC17 118 aaPredicted RBP17.43■□□□□ 0.38
SKA1-202ENST00000398452 BCS1LQ9Y276 419 aa17.43■□□□□ 0.38
SKA1-202ENST00000398452 SASH1O94885 1247 aa17.42■□□□□ 0.38
SKA1-202ENST00000398452 NPR1P16066 1061 aa17.42■□□□□ 0.38
SKA1-202ENST00000398452 ALDH1B1P30837 517 aa17.42■□□□□ 0.38
SKA1-202ENST00000398452 PUS3Q9BZE2 481 aaKnown RBP17.42■□□□□ 0.38
SKA1-202ENST00000398452 BSDC1Q9NW68 430 aaPredicted RBP17.42■□□□□ 0.38
SKA1-202ENST00000398452 BBOX1O75936 387 aa17.41■□□□□ 0.38
SKA1-202ENST00000398452 DPEP1P16444 411 aa17.41■□□□□ 0.38
SKA1-202ENST00000398452 CRY2Q49AN0 593 aa17.41■□□□□ 0.38
SKA1-202ENST00000398452 TNNI3KQ59H18 835 aa17.41■□□□□ 0.38
SKA1-202ENST00000398452 GORABQ5T7V8 394 aa17.41■□□□□ 0.38
SKA1-202ENST00000398452 ATG9AQ7Z3C6 839 aa17.41■□□□□ 0.38
SKA1-202ENST00000398452 TMC4Q7Z404 712 aa17.41■□□□□ 0.38
SKA1-202ENST00000398452 C2CD5Q86YS7 1000 aa17.41■□□□□ 0.38
SKA1-202ENST00000398452 MASTLQ96GX5 879 aa17.41■□□□□ 0.38
SKA1-202ENST00000398452 NEUROD6Q96NK8 337 aa17.41■□□□□ 0.38
SKA1-202ENST00000398452 CRAMP1Q96RY5 1269 aa17.41■□□□□ 0.38
SKA1-202ENST00000398452 GPR108Q9NPR9 543 aa17.41■□□□□ 0.38
SKA1-202ENST00000398452 FPGT-TNNI3KV9GXZ4 949 aa17.41■□□□□ 0.38
SKA1-202ENST00000398452 ERC2O15083 957 aa17.4■□□□□ 0.38
SKA1-202ENST00000398452 MX1P20591 662 aa17.4■□□□□ 0.38
SKA1-202ENST00000398452 KCNJ4P48050 445 aa17.4■□□□□ 0.38
SKA1-202ENST00000398452 CELF1Q92879 486 aaKnown RBP17.4■□□□□ 0.38
SKA1-202ENST00000398452 ZNF622Q969S3 477 aaKnown RBP eCLIP17.4■□□□□ 0.387e-12■□□□□ 9.8
SKA1-202ENST00000398452 ANKRD2Q9GZV1 360 aa17.4■□□□□ 0.38
SKA1-202ENST00000398452 RIPOR2Q9Y4F9 1068 aa17.4■□□□□ 0.38
SKA1-202ENST00000398452 KLRG2A4D1S0 409 aaPredicted RBP17.39■□□□□ 0.37
SKA1-202ENST00000398452 HOXA10P31260 410 aaPredicted RBP17.39■□□□□ 0.37
SKA1-202ENST00000398452 PDE8BO95263 885 aa17.38■□□□□ 0.37
SKA1-202ENST00000398452 IFIT1P09914 478 aaKnown RBP17.38■□□□□ 0.37
SKA1-202ENST00000398452 SLC5A1P13866 664 aa17.38■□□□□ 0.37
SKA1-202ENST00000398452 CD44P16070 742 aaKnown RBP17.38■□□□□ 0.37
SKA1-202ENST00000398452 PDE4AP27815 886 aa17.38■□□□□ 0.37
SKA1-202ENST00000398452 CHRNDQ07001 517 aa17.38■□□□□ 0.37
SKA1-202ENST00000398452 PUM3Q15397 648 aaKnown RBP17.38■□□□□ 0.37
SKA1-202ENST00000398452 ATP2B3Q16720 1220 aa17.38■□□□□ 0.37
SKA1-202ENST00000398452 ARHGAP27Q6ZUM4 889 aa17.38■□□□□ 0.37
SKA1-202ENST00000398452 C16orf71Q8IYS4 520 aaPredicted RBP17.38■□□□□ 0.37
SKA1-202ENST00000398452 CNKSR1Q969H4 720 aa17.38■□□□□ 0.37
SKA1-202ENST00000398452 CCDC8Q9H0W5 538 aaPredicted RBP17.38■□□□□ 0.37
SKA1-202ENST00000398452 GPBP1L1Q9HC44 474 aaPredicted RBP17.38■□□□□ 0.37
SKA1-202ENST00000398452 NRXN2Q9P2S2 1712 aa17.38■□□□□ 0.37
SKA1-202ENST00000398452 SRGNP10124 158 aa17.37■□□□□ 0.37
SKA1-202ENST00000398452 TGFB2P61812 414 aa17.37■□□□□ 0.37
SKA1-202ENST00000398452 CCDC158Q5M9N0 1113 aa17.37■□□□□ 0.37
SKA1-202ENST00000398452 STYK1Q6J9G0 422 aa17.37■□□□□ 0.37
SKA1-202ENST00000398452 SKAP1Q86WV1 359 aa17.37■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms