RNA–Protein interactions for RNA: ENST00000395969.6

VPS41-203, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 5 BASIC

Gene VPS41, Length 3,181 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-203ENST00000395969 HSPA4P34932 840 aa6.48□□□□□ -1.37
VPS41-203ENST00000395969 EVI5LQ96CN4 794 aa6.48□□□□□ -1.37
VPS41-203ENST00000395969 ELL2O00472 640 aaPredicted RBP6.47□□□□□ -1.37
VPS41-203ENST00000395969 ZSCAN20P17040 1043 aaPredicted RBP6.47□□□□□ -1.37
VPS41-203ENST00000395969 PARP10Q53GL7 1025 aa6.47□□□□□ -1.37
VPS41-203ENST00000395969 CASC1Q6TDU7 716 aa6.47□□□□□ -1.37
VPS41-203ENST00000395969 COPS6Q7L5N1 327 aa6.47□□□□□ -1.37
VPS41-203ENST00000395969 VGLL2Q8N8G2 317 aa6.47□□□□□ -1.37
VPS41-203ENST00000395969 CWC25Q9NXE8 425 aaPredicted RBP6.47□□□□□ -1.37
VPS41-203ENST00000395969 R3HCC1Q9Y3T6 440 aaKnown RBP6.47□□□□□ -1.37
VPS41-203ENST00000395969 EXOC5O00471 708 aa6.47□□□□□ -1.37
VPS41-203ENST00000395969 SGSM2O43147 1006 aa6.47□□□□□ -1.37
VPS41-203ENST00000395969 ATG9AQ7Z3C6 839 aa6.47□□□□□ -1.37
VPS41-203ENST00000395969 ZFP91Q96JP5 570 aaPredicted RBP6.47□□□□□ -1.37
VPS41-203ENST00000395969 CCDC94Q9BW85 323 aaPredicted RBP6.47□□□□□ -1.37
VPS41-203ENST00000395969 LNPKQ9C0E8 428 aa6.47□□□□□ -1.37
VPS41-203ENST00000395969 ECHDC1Q9NTX5 307 aa6.47□□□□□ -1.37
VPS41-203ENST00000395969 CACNA1SQ13698 1873 aa6.47□□□□□ -1.37
VPS41-203ENST00000395969 ANKRD31Q8N7Z5 1873 aa6.47□□□□□ -1.37
VPS41-203ENST00000395969 IL15P40933 162 aaPredicted RBP6.47□□□□□ -1.37
VPS41-203ENST00000395969 ZNF445P59923 1031 aa6.47□□□□□ -1.37
VPS41-203ENST00000395969 KLHL40Q2TBA0 621 aa6.47□□□□□ -1.37
VPS41-203ENST00000395969 ZC3H15Q8WU90 426 aaKnown RBP6.47□□□□□ -1.37
VPS41-203ENST00000395969 ANP32BQ92688 251 aaKnown RBP6.47□□□□□ -1.37
VPS41-203ENST00000395969 HAUS7Q99871 368 aa6.47□□□□□ -1.37
VPS41-203ENST00000395969 PRAMEF22A3QJZ6 481 aa6.46□□□□□ -1.38
VPS41-203ENST00000395969 CSB-PGBD3P0DP91 1061 aa6.46□□□□□ -1.38
VPS41-203ENST00000395969 MCM5P33992 734 aa6.46□□□□□ -1.38
VPS41-203ENST00000395969 TMCO4Q5TGY1 634 aa6.46□□□□□ -1.38
VPS41-203ENST00000395969 C15orf52Q6ZUT6 534 aaKnown RBP6.46□□□□□ -1.38
VPS41-203ENST00000395969 MARCH10Q8NA82 808 aaPredicted RBP6.46□□□□□ -1.38
VPS41-203ENST00000395969 BICC1Q9H694 974 aaKnown RBP6.46□□□□□ -1.38
VPS41-203ENST00000395969 CCDC88AQ3V6T2 1871 aa6.46□□□□□ -1.38
VPS41-203ENST00000395969 SOX12O15370 315 aa6.46□□□□□ -1.38
VPS41-203ENST00000395969 CSPP1Q1MSJ5 1256 aa6.46□□□□□ -1.38
VPS41-203ENST00000395969 CERKQ8TCT0 537 aa6.46□□□□□ -1.38
VPS41-203ENST00000395969 ZNF526Q8TF50 670 aaPredicted RBP6.46□□□□□ -1.38
VPS41-203ENST00000395969 GPATCH3Q96I76 525 aa6.46□□□□□ -1.38
VPS41-203ENST00000395969 LSG1Q9H089 658 aaKnown RBP6.46□□□□□ -1.38
VPS41-203ENST00000395969 IRS2Q9Y4H2 1338 aa6.45□□□□□ -1.38
VPS41-203ENST00000395969 ECM29Q5VYK3 1845 aa6.45□□□□□ -1.38
VPS41-203ENST00000395969 CDK5RAP2Q96SN8 1893 aa6.45□□□□□ -1.38
VPS41-203ENST00000395969 SRGAP3O43295 1099 aa6.45□□□□□ -1.38
VPS41-203ENST00000395969 CAMTA2O94983 1202 aa6.45□□□□□ -1.38
VPS41-203ENST00000395969 FGFR2P21802 821 aa6.45□□□□□ -1.38
VPS41-203ENST00000395969 EVCP57679 992 aa6.45□□□□□ -1.38
VPS41-203ENST00000395969 EVA1CP58658 441 aa6.45□□□□□ -1.38
VPS41-203ENST00000395969 CACNB1Q02641 598 aaPredicted RBP6.45□□□□□ -1.38
VPS41-203ENST00000395969 SASS6Q6UVJ0 657 aa6.45□□□□□ -1.38
VPS41-203ENST00000395969 TTC14Q96N46 770 aa6.45□□□□□ -1.38
VPS41-203ENST00000395969 MTA3Q9BTC8 594 aa6.45□□□□□ -1.38
VPS41-203ENST00000395969 AGXT2Q9BYV1 514 aa6.45□□□□□ -1.38
VPS41-203ENST00000395969 ZKSCAN5Q9Y2L8 839 aa6.45□□□□□ -1.38
VPS41-203ENST00000395969 SF3B3Q15393 1217 aaKnown RBP6.45□□□□□ -1.38
VPS41-203ENST00000395969 NLRP10Q86W26 655 aa6.45□□□□□ -1.38
VPS41-203ENST00000395969 CNTROBQ8N137 903 aa6.45□□□□□ -1.38
VPS41-203ENST00000395969 HMG20BQ9P0W2 317 aa6.45□□□□□ -1.38
VPS41-203ENST00000395969 KLRG2A4D1S0 409 aaPredicted RBP6.44□□□□□ -1.38
VPS41-203ENST00000395969 KIF20AO95235 890 aa6.44□□□□□ -1.38
VPS41-203ENST00000395969 ARID4AP29374 1257 aaPredicted RBP6.44□□□□□ -1.38
VPS41-203ENST00000395969 KCNV2Q8TDN2 545 aa6.44□□□□□ -1.38
VPS41-203ENST00000395969 GTPBP4Q9BZE4 634 aaKnown RBP6.44□□□□□ -1.38
VPS41-203ENST00000395969 RIPOR2Q9Y4F9 1068 aa6.44□□□□□ -1.38
VPS41-203ENST00000395969 ZNF804BA4D1E1 1349 aa6.44□□□□□ -1.38
VPS41-203ENST00000395969 NCLP19338 710 aaKnown RBP6.44□□□□□ -1.38
VPS41-203ENST00000395969 SLC39A6Q13433 755 aa6.44□□□□□ -1.38
VPS41-203ENST00000395969 NECTIN1Q15223 517 aa6.44□□□□□ -1.38
VPS41-203ENST00000395969 TNNI3KQ59H18 835 aa6.44□□□□□ -1.38
VPS41-203ENST00000395969 EPHA10Q5JZY3 1008 aa6.44□□□□□ -1.38
VPS41-203ENST00000395969 RIC3Q7Z5B4 369 aa6.44□□□□□ -1.38
VPS41-203ENST00000395969 CLASRPQ8N2M8 674 aaKnown RBP6.44□□□□□ -1.38
VPS41-203ENST00000395969 MAP4K1Q92918 833 aa6.44□□□□□ -1.38
VPS41-203ENST00000395969 HELLSQ9NRZ9 838 aa6.44□□□□□ -1.38
VPS41-203ENST00000395969 CCDC87Q9NVE4 849 aa6.44□□□□□ -1.38
VPS41-203ENST00000395969 FPGT-TNNI3KV9GXZ4 949 aa6.44□□□□□ -1.38
VPS41-203ENST00000395969 COL4A1P02462 1669 aa6.43□□□□□ -1.38
VPS41-203ENST00000395969 GREB1LQ9C091 1923 aaPredicted RBP6.43□□□□□ -1.38
VPS41-203ENST00000395969 MROH5Q6ZUA9 1318 aa6.43□□□□□ -1.38
VPS41-203ENST00000395969 EYA2O00167 538 aa6.43□□□□□ -1.38
VPS41-203ENST00000395969 DDB1Q16531 1140 aa6.43□□□□□ -1.38
VPS41-203ENST00000395969 SLC27A3Q5K4L6 730 aa6.43□□□□□ -1.38
VPS41-203ENST00000395969 CERS3Q8IU89 383 aa6.43□□□□□ -1.38
VPS41-203ENST00000395969 RUFY2Q8WXA3 655 aa6.43□□□□□ -1.38
VPS41-203ENST00000395969 ZNF592Q92610 1267 aa6.43□□□□□ -1.38
VPS41-203ENST00000395969 C9orf78Q9NZ63 289 aaPredicted RBP6.43□□□□□ -1.38
VPS41-203ENST00000395969 AKAP2Q9Y2D5 859 aa6.43□□□□□ -1.38
VPS41-203ENST00000395969 K7ELQ4 463 aaPredicted RBP6.43□□□□□ -1.38
VPS41-203ENST00000395969 GTF2F1P35269 517 aaKnown RBP eCLIP6.43□□□□□ -1.389e-7■■■■□ 24.5
VPS41-203ENST00000395969 CWF19L2Q2TBE0 894 aaKnown RBP6.43□□□□□ -1.38
VPS41-203ENST00000395969 KIF6Q6ZMV9 814 aa6.43□□□□□ -1.38
VPS41-203ENST00000395969 C16orf71Q8IYS4 520 aaPredicted RBP6.43□□□□□ -1.38
VPS41-203ENST00000395969 OTUD7AQ8TE49 926 aaPredicted RBP6.43□□□□□ -1.38
VPS41-203ENST00000395969 DSCC1Q9BVC3 393 aa6.43□□□□□ -1.38
VPS41-203ENST00000395969 MORC2Q9Y6X9 1032 aaPredicted RBP6.43□□□□□ -1.38
VPS41-203ENST00000395969 PDE8AO60658 829 aa6.42□□□□□ -1.38
VPS41-203ENST00000395969 NTSR2O95665 410 aa6.42□□□□□ -1.38
VPS41-203ENST00000395969 ZFYP08048 801 aaPredicted RBP6.42□□□□□ -1.38
VPS41-203ENST00000395969 EAF2Q96CJ1 260 aaPredicted RBP6.42□□□□□ -1.38
VPS41-203ENST00000395969 MYD88Q99836 296 aa6.42□□□□□ -1.38
VPS41-203ENST00000395969 ZSWIM6Q9HCJ5 1215 aa6.42□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 85 ms