RNA–Protein interactions for RNA: ENST00000389856.9

CCDC88C-203, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,641 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-203ENST00000389856 GORABQ5T7V8 394 aa22.06■■□□□ 1.12
CCDC88C-203ENST00000389856 PPIL4Q8WUA2 492 aaKnown RBP eCLIP22.06■■□□□ 1.12
CCDC88C-203ENST00000389856 NLRP3Q96P20 1036 aa22.06■■□□□ 1.12
CCDC88C-203ENST00000389856 ESYT1Q9BSJ8 1104 aa22.06■■□□□ 1.12
CCDC88C-203ENST00000389856 DIAPH3Q9NSV4 1193 aa22.06■■□□□ 1.12
CCDC88C-203ENST00000389856 DBNDD2Q9BQY9 259 aa22.05■■□□□ 1.12
CCDC88C-203ENST00000389856 ANTXR1Q9H6X2 564 aa22.05■■□□□ 1.12
CCDC88C-203ENST00000389856 RFX7Q2KHR2 1363 aa22.04■■□□□ 1.12
CCDC88C-203ENST00000389856 ATP2B3Q16720 1220 aa22.04■■□□□ 1.12
CCDC88C-203ENST00000389856 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP22.04■■□□□ 1.12
CCDC88C-203ENST00000389856 RIC1Q4ADV7 1423 aa22.04■■□□□ 1.12
CCDC88C-203ENST00000389856 MCCP23508 829 aa22.03■■□□□ 1.12
CCDC88C-203ENST00000389856 HSCBQ8IWL3 235 aa22.03■■□□□ 1.12
CCDC88C-203ENST00000389856 TFCP2L1Q9NZI6 479 aa22.03■■□□□ 1.12
CCDC88C-203ENST00000389856 SPEF2Q9C093 1822 aa22.02■■□□□ 1.12
CCDC88C-203ENST00000389856 MAP4K4O95819 1239 aaPredicted RBP22.02■■□□□ 1.12
CCDC88C-203ENST00000389856 PROM2Q8N271 834 aa22.02■■□□□ 1.12
CCDC88C-203ENST00000389856 BOLA2Q9H3K6 86 aa22.02■■□□□ 1.12
CCDC88C-203ENST00000389856 PDE8BO95263 885 aa22.02■■□□□ 1.11
CCDC88C-203ENST00000389856 PUM3Q15397 648 aaKnown RBP22.02■■□□□ 1.11
CCDC88C-203ENST00000389856 LRRFIP1Q32MZ4 808 aaKnown RBP22.02■■□□□ 1.11
CCDC88C-203ENST00000389856 SMIM5Q71RC9 77 aa22.02■■□□□ 1.11
CCDC88C-203ENST00000389856 AMIGO3Q86WK7 504 aa22.02■■□□□ 1.11
CCDC88C-203ENST00000389856 ANKRD18AQ8IVF6 992 aa22.02■■□□□ 1.11
CCDC88C-203ENST00000389856 CNBD1Q8NA66 436 aa22.02■■□□□ 1.11
CCDC88C-203ENST00000389856 HAUS7Q99871 368 aa22.02■■□□□ 1.11
CCDC88C-203ENST00000389856 TIMM10P62072 90 aa22.01■■□□□ 1.11
CCDC88C-203ENST00000389856 NFIXQ14938 502 aa22.01■■□□□ 1.11
CCDC88C-203ENST00000389856 CASZ1Q86V15 1759 aa22.01■■□□□ 1.11
CCDC88C-203ENST00000389856 FSD1Q9BTV5 496 aa22.01■■□□□ 1.11
CCDC88C-203ENST00000389856 GYS1P13807 737 aa22■■□□□ 1.11
CCDC88C-203ENST00000389856 ST5P78524 1137 aa22■■□□□ 1.11
CCDC88C-203ENST00000389856 TTC39AQ5SRH9 613 aa22■■□□□ 1.11
CCDC88C-203ENST00000389856 KIAA1211Q6ZU35 1233 aa22■■□□□ 1.11
CCDC88C-203ENST00000389856 RAD50Q92878 1312 aa21.99■■□□□ 1.11
CCDC88C-203ENST00000389856 SF3B2Q13435 895 aaKnown RBP21.99■■□□□ 1.11
CCDC88C-203ENST00000389856 LPIN2Q92539 896 aa21.99■■□□□ 1.11
CCDC88C-203ENST00000389856 AKT1S1Q96B36 256 aa21.99■■□□□ 1.11
CCDC88C-203ENST00000389856 XAGE2Q96GT9 111 aa21.99■■□□□ 1.11
CCDC88C-203ENST00000389856 USP26Q9BXU7 913 aa21.99■■□□□ 1.11
CCDC88C-203ENST00000389856 IFIT1P09914 478 aaKnown RBP21.98■■□□□ 1.11
CCDC88C-203ENST00000389856 SLC5A1P13866 664 aa21.98■■□□□ 1.11
CCDC88C-203ENST00000389856 VGLL2Q8N8G2 317 aa21.98■■□□□ 1.11
CCDC88C-203ENST00000389856 ARAP2Q8WZ64 1704 aa21.98■■□□□ 1.11
CCDC88C-203ENST00000389856 NLGN1Q8N2Q7 840 aa21.98■■□□□ 1.11
CCDC88C-203ENST00000389856 SEC31BQ9NQW1 1179 aa21.98■■□□□ 1.11
CCDC88C-203ENST00000389856 CHMP5Q9NZZ3 219 aa21.98■■□□□ 1.11
CCDC88C-203ENST00000389856 DDX46Q7L014 1031 aaKnown RBP21.97■■□□□ 1.11
CCDC88C-203ENST00000389856 IL27Q8NEV9 243 aa21.97■■□□□ 1.11
CCDC88C-203ENST00000389856 ZNF512BQ96KM6 892 aaPredicted RBP21.97■■□□□ 1.11
CCDC88C-203ENST00000389856 DNAJC2Q99543 621 aaKnown RBP21.97■■□□□ 1.11
CCDC88C-203ENST00000389856 SGSM2O43147 1006 aa21.96■■□□□ 1.11
CCDC88C-203ENST00000389856 UQCRFS1P1P0C7P4 283 aa21.96■■□□□ 1.11
CCDC88C-203ENST00000389856 GSE1Q14687 1217 aa21.96■■□□□ 1.11
CCDC88C-203ENST00000389856 ANO2Q9NQ90 1003 aa21.96■■□□□ 1.11
CCDC88C-203ENST00000389856 BSDC1Q9NW68 430 aaPredicted RBP21.96■■□□□ 1.11
CCDC88C-203ENST00000389856 FRAT2O75474 233 aaPredicted RBP21.95■■□□□ 1.1
CCDC88C-203ENST00000389856 PAG1Q9NWQ8 432 aa21.95■■□□□ 1.1
CCDC88C-203ENST00000389856 TM4SF1P30408 202 aa21.95■■□□□ 1.1
CCDC88C-203ENST00000389856 CIZ1Q9ULV3 898 aaPredicted RBP21.95■■□□□ 1.1
CCDC88C-203ENST00000389856 SERPINB2P05120 415 aa21.94■■□□□ 1.1
CCDC88C-203ENST00000389856 ZNF827Q17R98 1081 aa21.94■■□□□ 1.1
CCDC88C-203ENST00000389856 CWC27Q6UX04 472 aaKnown RBP21.94■■□□□ 1.1
CCDC88C-203ENST00000389856 KBTBD3Q8NAB2 608 aa21.94■■□□□ 1.1
CCDC88C-203ENST00000389856 SLKQ9H2G2 1235 aaPredicted RBP21.94■■□□□ 1.1
CCDC88C-203ENST00000389856 RPS8P62241 208 aaKnown RBP21.93■■□□□ 1.1
CCDC88C-203ENST00000389856 RABEP1Q15276 862 aa21.93■■□□□ 1.1
CCDC88C-203ENST00000389856 ANKRD2Q9GZV1 360 aa21.93■■□□□ 1.1
CCDC88C-203ENST00000389856 FGFR2P21802 821 aa21.92■■□□□ 1.1
CCDC88C-203ENST00000389856 BAG6P46379 1132 aa21.92■■□□□ 1.1
CCDC88C-203ENST00000389856 ANAPC15P60006 121 aa21.92■■□□□ 1.1
CCDC88C-203ENST00000389856 PRR5LQ6MZQ0 368 aa21.92■■□□□ 1.1
CCDC88C-203ENST00000389856 STK32BQ9NY57 414 aa21.92■■□□□ 1.1
CCDC88C-203ENST00000389856 ADORA1P30542 326 aa21.91■■□□□ 1.1
CCDC88C-203ENST00000389856 CHRNDQ07001 517 aa21.91■■□□□ 1.1
CCDC88C-203ENST00000389856 TTF1Q15361 905 aaPredicted RBP21.91■■□□□ 1.1
CCDC88C-203ENST00000389856 GOLIM4O00461 696 aa21.91■■□□□ 1.1
CCDC88C-203ENST00000389856 C3orf67Q6ZVT6 689 aa21.91■■□□□ 1.1
CCDC88C-203ENST00000389856 RPGRQ92834 1020 aaKnown RBP21.91■■□□□ 1.1
CCDC88C-203ENST00000389856 QSER1Q2KHR3 1735 aa21.9■■□□□ 1.1
CCDC88C-203ENST00000389856 ZFYP08048 801 aaPredicted RBP21.9■■□□□ 1.1
CCDC88C-203ENST00000389856 UBE4AQ14139 1066 aa21.9■■□□□ 1.1
CCDC88C-203ENST00000389856 COL23A1Q86Y22 540 aaPredicted RBP21.9■■□□□ 1.1
CCDC88C-203ENST00000389856 SNRKQ9NRH2 765 aa21.9■■□□□ 1.1
CCDC88C-203ENST00000389856 TNRC6CQ9HCJ0 1690 aaKnown RBP21.9■■□□□ 1.1
CCDC88C-203ENST00000389856 NMIQ13287 307 aaPredicted RBP21.89■■□□□ 1.09
CCDC88C-203ENST00000389856 ZSCAN25Q6NSZ9 544 aa21.89■■□□□ 1.09
CCDC88C-203ENST00000389856 CAMKK2Q96RR4 588 aa21.89■■□□□ 1.09
CCDC88C-203ENST00000389856 KIF2CQ99661 725 aa21.89■■□□□ 1.09
CCDC88C-203ENST00000389856 A0A1B0GUL6 1792 aa21.89■■□□□ 1.09
CCDC88C-203ENST00000389856 POLRMTO00411 1230 aaKnown RBP21.88■■□□□ 1.09
CCDC88C-203ENST00000389856 ARID4AP29374 1257 aaPredicted RBP21.88■■□□□ 1.09
CCDC88C-203ENST00000389856 FKBP4Q02790 459 aaKnown RBP eCLIP21.88■■□□□ 1.09
CCDC88C-203ENST00000389856 HELBQ8NG08 1087 aaPredicted RBP21.88■■□□□ 1.09
CCDC88C-203ENST00000389856 RBM17Q96I25 401 aaKnown RBP21.88■■□□□ 1.09
CCDC88C-203ENST00000389856 DDX24Q9GZR7 859 aaKnown RBP eCLIP21.88■■□□□ 1.09
CCDC88C-203ENST00000389856 GNL3LQ9NVN8 582 aaKnown RBP21.88■■□□□ 1.09
CCDC88C-203ENST00000389856 GRAPQ13588 217 aa21.88■■□□□ 1.09
CCDC88C-203ENST00000389856 CCDC102BQ68D86 513 aa21.88■■□□□ 1.09
CCDC88C-203ENST00000389856 GRAPLQ8TC17 118 aaPredicted RBP21.88■■□□□ 1.09
Retrieved 100 of 20,778 RNA–protein pairs in 57.8 ms