RNA–Protein interactions for RNA: ENST00000360001.10

SDF4-202, Transcript of stromal cell derived factor 4, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SDF4, Length 1,956 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDF4-202ENST00000360001 CDC5LQ99459 802 aaKnown RBP28.27■■■□□ 2.12
SDF4-202ENST00000360001 BOLA2Q9H3K6 86 aa28.27■■■□□ 2.12
SDF4-202ENST00000360001 TAF1P21675 1872 aa28.27■■■□□ 2.12
SDF4-202ENST00000360001 MROH5Q6ZUA9 1318 aa28.27■■■□□ 2.12
SDF4-202ENST00000360001 NPHP1O15259 732 aa28.26■■■□□ 2.11
SDF4-202ENST00000360001 ANP32AP39687 249 aaKnown RBP28.26■■■□□ 2.11
SDF4-202ENST00000360001 DDR1Q08345 913 aa28.26■■■□□ 2.11
SDF4-202ENST00000360001 ANO8Q9HCE9 1232 aaPredicted RBP28.26■■■□□ 2.11
SDF4-202ENST00000360001 SERPINB2P05120 415 aa28.26■■■□□ 2.11
SDF4-202ENST00000360001 MSH5O43196 834 aa28.25■■■□□ 2.11
SDF4-202ENST00000360001 PDE8BO95263 885 aa28.25■■■□□ 2.11
SDF4-202ENST00000360001 CHMLP26374 656 aa28.25■■■□□ 2.11
SDF4-202ENST00000360001 ILDR1Q86SU0 546 aaPredicted RBP28.25■■■□□ 2.11
SDF4-202ENST00000360001 POLRMTO00411 1230 aaKnown RBP28.24■■■□□ 2.11
SDF4-202ENST00000360001 SF3B2Q13435 895 aaKnown RBP28.24■■■□□ 2.11
SDF4-202ENST00000360001 ATP2B3Q16720 1220 aa28.24■■■□□ 2.11
SDF4-202ENST00000360001 BAG6P46379 1132 aa28.23■■■□□ 2.11
SDF4-202ENST00000360001 NLGN1Q8N2Q7 840 aa28.23■■■□□ 2.11
SDF4-202ENST00000360001 ADORA1P30542 326 aa28.22■■■□□ 2.11
SDF4-202ENST00000360001 SLC15A2Q16348 729 aa28.22■■■□□ 2.11
SDF4-202ENST00000360001 ANKRD18AQ8IVF6 992 aa28.22■■■□□ 2.11
SDF4-202ENST00000360001 EVI5LQ96CN4 794 aa28.22■■■□□ 2.11
SDF4-202ENST00000360001 XAGE2Q96GT9 111 aa28.22■■■□□ 2.11
SDF4-202ENST00000360001 DEFB132Q7Z7B7 95 aa28.22■■■□□ 2.11
SDF4-202ENST00000360001 C22orf23Q9BZE7 217 aa28.22■■■□□ 2.11
SDF4-202ENST00000360001 EIF5BO60841 1220 aaKnown RBP28.21■■■□□ 2.11
SDF4-202ENST00000360001 HELBQ8NG08 1087 aaPredicted RBP28.21■■■□□ 2.11
SDF4-202ENST00000360001 CELF1Q92879 486 aaKnown RBP28.2■■■□□ 2.11
SDF4-202ENST00000360001 QSER1Q2KHR3 1735 aa28.2■■■□□ 2.1
SDF4-202ENST00000360001 FGFR2P21802 821 aa28.2■■■□□ 2.1
SDF4-202ENST00000360001 HAUS7Q99871 368 aa28.2■■■□□ 2.1
SDF4-202ENST00000360001 BSDC1Q9NW68 430 aaPredicted RBP28.2■■■□□ 2.1
SDF4-202ENST00000360001 ST5P78524 1137 aa28.19■■■□□ 2.1
SDF4-202ENST00000360001 PUM3Q15397 648 aaKnown RBP28.19■■■□□ 2.1
SDF4-202ENST00000360001 ESYT1Q9BSJ8 1104 aa28.19■■■□□ 2.1
SDF4-202ENST00000360001 STK32BQ9NY57 414 aa28.19■■■□□ 2.1
SDF4-202ENST00000360001 ARAP2Q8WZ64 1704 aa28.19■■■□□ 2.1
SDF4-202ENST00000360001 A0A1B0GUL6 1792 aa28.18■■■□□ 2.1
SDF4-202ENST00000360001 NRXN2Q9P2S2 1712 aa28.18■■■□□ 2.1
SDF4-202ENST00000360001 CHRNDQ07001 517 aa28.17■■■□□ 2.1
SDF4-202ENST00000360001 TAF5LO75529 589 aa28.17■■■□□ 2.1
SDF4-202ENST00000360001 RPS8P62241 208 aaKnown RBP28.17■■■□□ 2.1
SDF4-202ENST00000360001 GORABQ5T7V8 394 aa28.17■■■□□ 2.1
SDF4-202ENST00000360001 DDX46Q7L014 1031 aaKnown RBP28.17■■■□□ 2.1
SDF4-202ENST00000360001 LPIN2Q92539 896 aa28.17■■■□□ 2.1
SDF4-202ENST00000360001 EDC3Q96F86 508 aaKnown RBP28.17■■■□□ 2.1
SDF4-202ENST00000360001 NDUFB9Q9Y6M9 179 aa28.17■■■□□ 2.1
SDF4-202ENST00000360001 CCDC158Q5M9N0 1113 aa28.16■■■□□ 2.1
SDF4-202ENST00000360001 PPIL4Q8WUA2 492 aaKnown RBP eCLIP28.16■■■□□ 2.1
SDF4-202ENST00000360001 RBM25P49756 843 aaKnown RBP28.15■■■□□ 2.1
SDF4-202ENST00000360001 CRY2Q49AN0 593 aa28.15■■■□□ 2.1
SDF4-202ENST00000360001 DNAJC2Q99543 621 aaKnown RBP28.15■■■□□ 2.1
SDF4-202ENST00000360001 REC8O95072 547 aa28.14■■■□□ 2.1
SDF4-202ENST00000360001 IFIT1P09914 478 aaKnown RBP28.14■■■□□ 2.1
SDF4-202ENST00000360001 TTC39AQ5SRH9 613 aa28.14■■■□□ 2.1
SDF4-202ENST00000360001 IL25Q9H293 177 aa28.14■■■□□ 2.1
SDF4-202ENST00000360001 MINPP1Q9UNW1 487 aa28.14■■■□□ 2.1
SDF4-202ENST00000360001 SNAP23O00161 211 aa28.13■■■□□ 2.09
SDF4-202ENST00000360001 USP26Q9BXU7 913 aa28.13■■■□□ 2.09
SDF4-202ENST00000360001 SLC5A1P13866 664 aa28.13■■■□□ 2.09
SDF4-202ENST00000360001 FSD1Q9BTV5 496 aa28.13■■■□□ 2.09
SDF4-202ENST00000360001 MMP10P09238 476 aa28.12■■■□□ 2.09
SDF4-202ENST00000360001 MSL1Q68DK7 614 aa28.12■■■□□ 2.09
SDF4-202ENST00000360001 DIAPH3Q9NSV4 1193 aa28.12■■■□□ 2.09
SDF4-202ENST00000360001 ANKRD31Q8N7Z5 1873 aa28.11■■■□□ 2.09
SDF4-202ENST00000360001 KLRG2A4D1S0 409 aaPredicted RBP28.11■■■□□ 2.09
SDF4-202ENST00000360001 GRAPQ13588 217 aa28.11■■■□□ 2.09
SDF4-202ENST00000360001 GRAPLQ8TC17 118 aaPredicted RBP28.11■■■□□ 2.09
SDF4-202ENST00000360001 ZNF512BQ96KM6 892 aaPredicted RBP28.11■■■□□ 2.09
SDF4-202ENST00000360001 PAG1Q9NWQ8 432 aa28.11■■■□□ 2.09
SDF4-202ENST00000360001 SGSM2O43147 1006 aa28.1■■■□□ 2.09
SDF4-202ENST00000360001 SCARF1Q14162 830 aa28.1■■■□□ 2.09
SDF4-202ENST00000360001 CWC27Q6UX04 472 aaKnown RBP28.1■■■□□ 2.09
SDF4-202ENST00000360001 CCDC125Q86Z20 511 aa28.1■■■□□ 2.09
SDF4-202ENST00000360001 IPO9Q96P70 1041 aaKnown RBP28.1■■■□□ 2.09
SDF4-202ENST00000360001 HIP1O00291 1037 aa28.1■■■□□ 2.09
SDF4-202ENST00000360001 CCDC102BQ68D86 513 aa28.1■■■□□ 2.09
SDF4-202ENST00000360001 RPGRQ92834 1020 aaKnown RBP28.1■■■□□ 2.09
SDF4-202ENST00000360001 PARP3Q9Y6F1 533 aa28.1■■■□□ 2.09
SDF4-202ENST00000360001 RFX7Q2KHR2 1363 aa28.09■■■□□ 2.09
SDF4-202ENST00000360001 AKAP11Q9UKA4 1901 aa28.09■■■□□ 2.09
SDF4-202ENST00000360001 GOLIM4O00461 696 aa28.09■■■□□ 2.09
SDF4-202ENST00000360001 PHKA1P46020 1223 aa28.08■■■□□ 2.09
SDF4-202ENST00000360001 KBTBD3Q8NAB2 608 aa28.08■■■□□ 2.09
SDF4-202ENST00000360001 BRIP1Q9BX63 1249 aa28.08■■■□□ 2.09
SDF4-202ENST00000360001 ARID4AP29374 1257 aaPredicted RBP28.07■■■□□ 2.08
SDF4-202ENST00000360001 RUFY2Q8WXA3 655 aa28.07■■■□□ 2.08
SDF4-202ENST00000360001 HOXA10P31260 410 aaPredicted RBP28.06■■■□□ 2.08
SDF4-202ENST00000360001 MCAMP43121 646 aa28.06■■■□□ 2.08
SDF4-202ENST00000360001 UBE4AQ14139 1066 aa28.06■■■□□ 2.08
SDF4-202ENST00000360001 SNRKQ9NRH2 765 aa28.06■■■□□ 2.08
SDF4-202ENST00000360001 NMIQ13287 307 aaPredicted RBP28.06■■■□□ 2.08
SDF4-202ENST00000360001 DDRGK1Q96HY6 314 aa28.06■■■□□ 2.08
SDF4-202ENST00000360001 FAM227BQ96M60 508 aa28.06■■■□□ 2.08
SDF4-202ENST00000360001 ANO2Q9NQ90 1003 aa28.06■■■□□ 2.08
SDF4-202ENST00000360001 WTIPA6NIX2 430 aaPredicted RBP28.05■■■□□ 2.08
SDF4-202ENST00000360001 FKBP4Q02790 459 aaKnown RBP eCLIP28.05■■■□□ 2.088e-7■■■■□ 22.5
SDF4-202ENST00000360001 RBM17Q96I25 401 aaKnown RBP28.05■■■□□ 2.08
SDF4-202ENST00000360001 ANKRD2Q9GZV1 360 aa28.05■■■□□ 2.08
SDF4-202ENST00000360001 ANTXR1Q9H6X2 564 aa28.05■■■□□ 2.08
Retrieved 100 of 20,778 RNA–protein pairs in 122.7 ms