RNA–Protein interactions for RNA: ENST00000344626.8

SMARCA4-201, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4, humanhuman

TSL 1 (best) BASIC

Gene SMARCA4, Length 5,392 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA4-201ENST00000344626 ABCA9Q8IUA7 1624 aa19.12■□□□□ 0.65
SMARCA4-201ENST00000344626 TFCP2Q12800 502 aa19.12■□□□□ 0.65
SMARCA4-201ENST00000344626 SPATA32Q96LK8 384 aa19.12■□□□□ 0.65
SMARCA4-201ENST00000344626 CIZ1Q9ULV3 898 aaPredicted RBP19.12■□□□□ 0.65
SMARCA4-201ENST00000344626 GNAT2P19087 354 aa19.11■□□□□ 0.65
SMARCA4-201ENST00000344626 TMEM67Q5HYA8 995 aa19.11■□□□□ 0.65
SMARCA4-201ENST00000344626 AXIN2Q9Y2T1 843 aa19.11■□□□□ 0.65
SMARCA4-201ENST00000344626 AATKQ6ZMQ8 1374 aa19.11■□□□□ 0.65
SMARCA4-201ENST00000344626 NUCB1Q02818 461 aa19.11■□□□□ 0.65
SMARCA4-201ENST00000344626 HOMER1Q86YM7 354 aa19.11■□□□□ 0.65
SMARCA4-201ENST00000344626 KLHDC4Q8TBB5 520 aa19.11■□□□□ 0.65
SMARCA4-201ENST00000344626 RAB34Q9BZG1 259 aa19.11■□□□□ 0.65
SMARCA4-201ENST00000344626 CNNM2Q9H8M5 875 aa19.11■□□□□ 0.65
SMARCA4-201ENST00000344626 CDC42BPAQ5VT25 1732 aa19.11■□□□□ 0.65
SMARCA4-201ENST00000344626 TTC41PQ6P2S7 1318 aa19.11■□□□□ 0.65
SMARCA4-201ENST00000344626 DLGAP5Q15398 846 aa19.1■□□□□ 0.65
SMARCA4-201ENST00000344626 EYA2O00167 538 aa19.1■□□□□ 0.65
SMARCA4-201ENST00000344626 MAGEB6P1A0A0J9YX57 407 aa19.1■□□□□ 0.65
SMARCA4-201ENST00000344626 TXNRD1Q16881 649 aa19.1■□□□□ 0.65
SMARCA4-201ENST00000344626 CEP57L1Q8IYX8 460 aa19.1■□□□□ 0.65
SMARCA4-201ENST00000344626 DENND2AQ9ULE3 1009 aa19.1■□□□□ 0.65
SMARCA4-201ENST00000344626 CCDC83Q8IWF9 413 aa19.09■□□□□ 0.65
SMARCA4-201ENST00000344626 C8orf76Q96K31 380 aa19.09■□□□□ 0.65
SMARCA4-201ENST00000344626 SRP68Q9UHB9 627 aaKnown RBP19.09■□□□□ 0.65
SMARCA4-201ENST00000344626 PALLDQ8WX93 1383 aa19.09■□□□□ 0.65
SMARCA4-201ENST00000344626 TEX11Q8IYF3 940 aa19.09■□□□□ 0.65
SMARCA4-201ENST00000344626 TMTC2Q8N394 836 aa19.09■□□□□ 0.65
SMARCA4-201ENST00000344626 GTF2IP78347 998 aa19.09■□□□□ 0.65
SMARCA4-201ENST00000344626 PAG1Q9NWQ8 432 aa19.09■□□□□ 0.65
SMARCA4-201ENST00000344626 LIMCH1Q9UPQ0 1083 aa19.09■□□□□ 0.65
SMARCA4-201ENST00000344626 MAGEB6Q8N7X4 407 aa19.09■□□□□ 0.65
SMARCA4-201ENST00000344626 ESR2Q92731 530 aa19.09■□□□□ 0.65
SMARCA4-201ENST00000344626 SPON1Q9HCB6 807 aa19.09■□□□□ 0.65
SMARCA4-201ENST00000344626 DOK7Q18PE1 504 aa19.08■□□□□ 0.65
SMARCA4-201ENST00000344626 PICK1Q9NRD5 415 aa19.08■□□□□ 0.65
SMARCA4-201ENST00000344626 KCNQ2O43526 872 aa19.08■□□□□ 0.65
SMARCA4-201ENST00000344626 NAP1L1P55209 391 aaKnown RBP19.08■□□□□ 0.65
SMARCA4-201ENST00000344626 NEK1Q96PY6 1258 aa19.08■□□□□ 0.65
SMARCA4-201ENST00000344626 CCDC194A0A1B0GVG4 234 aa19.08■□□□□ 0.64
SMARCA4-201ENST00000344626 IL6STP40189 918 aaPredicted RBP19.08■□□□□ 0.64
SMARCA4-201ENST00000344626 NLRP5P59047 1200 aa19.08■□□□□ 0.64
SMARCA4-201ENST00000344626 SYCP1Q15431 976 aa19.08■□□□□ 0.64
SMARCA4-201ENST00000344626 MCMDC2Q4G0Z9 681 aa19.08■□□□□ 0.64
SMARCA4-201ENST00000344626 PPP4R3AQ6IN85 833 aa19.08■□□□□ 0.64
SMARCA4-201ENST00000344626 KIF24Q5T7B8 1368 aa19.08■□□□□ 0.64
SMARCA4-201ENST00000344626 SYNMO15061 1565 aa19.07■□□□□ 0.64
SMARCA4-201ENST00000344626 GOLGA6L1Q8N7Z2 621 aa19.07■□□□□ 0.64
SMARCA4-201ENST00000344626 PDE1AP54750 535 aa19.07■□□□□ 0.64
SMARCA4-201ENST00000344626 TMEM266Q2M3C6 531 aa19.07■□□□□ 0.64
SMARCA4-201ENST00000344626 USP19O94966 1318 aa19.07■□□□□ 0.64
SMARCA4-201ENST00000344626 MCM5P33992 734 aa19.07■□□□□ 0.64
SMARCA4-201ENST00000344626 GCKRQ14397 625 aa19.07■□□□□ 0.64
SMARCA4-201ENST00000344626 CCDC144CPQ8IYA2 1237 aa19.07■□□□□ 0.64
SMARCA4-201ENST00000344626 PUM3Q15397 648 aaKnown RBP19.07■□□□□ 0.64
SMARCA4-201ENST00000344626 TNS3Q68CZ2 1445 aa19.06■□□□□ 0.64
SMARCA4-201ENST00000344626 SMARCE1Q969G3 411 aa19.06■□□□□ 0.64
SMARCA4-201ENST00000344626 TNMDQ9H2S6 317 aa19.06■□□□□ 0.64
SMARCA4-201ENST00000344626 CEP85Q6P2H3 762 aa19.06■□□□□ 0.64
SMARCA4-201ENST00000344626 DALRD3Q5D0E6 543 aaKnown RBP19.06■□□□□ 0.64
SMARCA4-201ENST00000344626 A0A1B0GUL7 405 aa19.06■□□□□ 0.64
SMARCA4-201ENST00000344626 BAG4O95429 457 aaKnown RBP19.06■□□□□ 0.64
SMARCA4-201ENST00000344626 MATR3P43243 847 aaKnown RBP eCLIP19.06■□□□□ 0.641e-6■■■■■ 30.1
SMARCA4-201ENST00000344626 TCP10Q12799 353 aa19.06■□□□□ 0.64
SMARCA4-201ENST00000344626 PDILTQ8N807 584 aa19.06■□□□□ 0.64
SMARCA4-201ENST00000344626 CAVIN1Q6NZI2 390 aaKnown RBP19.05■□□□□ 0.64
SMARCA4-201ENST00000344626 TTC6Q86TZ1 520 aa19.05■□□□□ 0.64
SMARCA4-201ENST00000344626 MICU3Q86XE3 530 aa19.05■□□□□ 0.64
SMARCA4-201ENST00000344626 RAB11FIP4Q86YS3 637 aa19.05■□□□□ 0.64
SMARCA4-201ENST00000344626 RAB3GAP1Q15042 981 aa19.05■□□□□ 0.64
SMARCA4-201ENST00000344626 CCDC39Q9UFE4 941 aa19.05■□□□□ 0.64
SMARCA4-201ENST00000344626 ERBB4Q15303 1308 aa19.05■□□□□ 0.64
SMARCA4-201ENST00000344626 MAST3O60307 1309 aa19.05■□□□□ 0.64
SMARCA4-201ENST00000344626 IARSP41252 1262 aaKnown RBP19.05■□□□□ 0.64
SMARCA4-201ENST00000344626 VPS72Q15906 364 aa19.05■□□□□ 0.64
SMARCA4-201ENST00000344626 TBC1D9Q6ZT07 1266 aa19.05■□□□□ 0.64
SMARCA4-201ENST00000344626 KIAA0825Q8IV33 1275 aa19.05■□□□□ 0.64
SMARCA4-201ENST00000344626 SULF1Q8IWU6 871 aa19.05■□□□□ 0.64
SMARCA4-201ENST00000344626 CCAR2Q8N163 923 aaKnown RBP19.05■□□□□ 0.64
SMARCA4-201ENST00000344626 IQGAP3Q86VI3 1631 aa19.05■□□□□ 0.64
SMARCA4-201ENST00000344626 TMEM87AQ8NBN3 555 aa19.04■□□□□ 0.64
SMARCA4-201ENST00000344626 WDR66Q8TBY9 1149 aa19.04■□□□□ 0.64
SMARCA4-201ENST00000344626 TSPY26PQ9H489 355 aa19.04■□□□□ 0.64
SMARCA4-201ENST00000344626 WTAPQ15007 396 aa19.04■□□□□ 0.64
SMARCA4-201ENST00000344626 TRIM35Q9UPQ4 493 aa19.04■□□□□ 0.64
SMARCA4-201ENST00000344626 TRAK2O60296 914 aa19.04■□□□□ 0.64
SMARCA4-201ENST00000344626 CCDC192P0DO97 292 aa19.04■□□□□ 0.64
SMARCA4-201ENST00000344626 GNAQP50148 359 aa19.04■□□□□ 0.64
SMARCA4-201ENST00000344626 RNF113AO15541 343 aaKnown RBP19.04■□□□□ 0.64
SMARCA4-201ENST00000344626 SMC2O95347 1197 aa19.04■□□□□ 0.64
SMARCA4-201ENST00000344626 SAP30BPQ9UHR5 308 aaKnown RBP19.03■□□□□ 0.64
SMARCA4-201ENST00000344626 IGSF1Q8N6C5 1336 aa19.03■□□□□ 0.64
SMARCA4-201ENST00000344626 CYP27B1O15528 508 aa19.03■□□□□ 0.64
SMARCA4-201ENST00000344626 MAP3K15Q6ZN16 1313 aa19.03■□□□□ 0.64
SMARCA4-201ENST00000344626 METAP2P50579 478 aaKnown RBP eCLIP19.03■□□□□ 0.649e-7■■□□□ 12.7
SMARCA4-201ENST00000344626 DCTPP1Q9H773 170 aa19.03■□□□□ 0.64
SMARCA4-201ENST00000344626 CAMSAP1Q5T5Y3 1602 aa19.03■□□□□ 0.64
SMARCA4-201ENST00000344626 C1orf167Q5SNV9 1468 aa19.03■□□□□ 0.64
SMARCA4-201ENST00000344626 FBXO41Q8TF61 875 aa19.03■□□□□ 0.64
SMARCA4-201ENST00000344626 TNNQ9UQP3 1299 aa19.03■□□□□ 0.64
SMARCA4-201ENST00000344626 NFKBIBQ15653 356 aa19.02■□□□□ 0.64
Retrieved 100 of 20,778 RNA–protein pairs in 102.7 ms