RNA–Protein interactions for RNA: ENST00000341594.9

SYNE1-201, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene SYNE1, Length 26,584 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-201ENST00000341594 CCDC83Q8IWF9 413 aa4.08□□□□□ -1.76
SYNE1-201ENST00000341594 KRBA2Q6ZNG9 492 aa4.08□□□□□ -1.76
SYNE1-201ENST00000341594 MROH1Q8NDA8 1641 aa4.08□□□□□ -1.76
SYNE1-201ENST00000341594 CFAP61Q8NHU2 1237 aa4.08□□□□□ -1.76
SYNE1-201ENST00000341594 MYRIPQ8NFW9 859 aa4.08□□□□□ -1.76
SYNE1-201ENST00000341594 CAPZA3Q96KX2 299 aa4.08□□□□□ -1.76
SYNE1-201ENST00000341594 ERCC5P28715 1186 aaPredicted RBP4.08□□□□□ -1.76
SYNE1-201ENST00000341594 GBP2P32456 591 aaPredicted RBP4.08□□□□□ -1.76
SYNE1-201ENST00000341594 NAV1Q8NEY1 1877 aa4.08□□□□□ -1.76
SYNE1-201ENST00000341594 CADPSQ9ULU8 1353 aa4.08□□□□□ -1.76
SYNE1-201ENST00000341594 BICDL1Q6ZP65 573 aa4.08□□□□□ -1.76
SYNE1-201ENST00000341594 GBP3Q9H0R5 595 aa4.08□□□□□ -1.76
SYNE1-201ENST00000341594 GGA2Q9UJY4 613 aa4.08□□□□□ -1.76
SYNE1-201ENST00000341594 HOOK1Q9UJC3 728 aaKnown RBP4.08□□□□□ -1.76
SYNE1-201ENST00000341594 LARP1BQ659C4 914 aaKnown RBP4.08□□□□□ -1.76
SYNE1-201ENST00000341594 SNRNP48Q6IEG0 339 aaKnown RBP4.08□□□□□ -1.76
SYNE1-201ENST00000341594 ZNHIT6Q9NWK9 470 aaKnown RBP4.08□□□□□ -1.76
SYNE1-201ENST00000341594 FRMPD1Q5SYB0 1578 aa4.08□□□□□ -1.76
SYNE1-201ENST00000341594 MICALL1Q8N3F8 863 aa4.08□□□□□ -1.76
SYNE1-201ENST00000341594 CCDC171Q6TFL3 1326 aa4.08□□□□□ -1.76
SYNE1-201ENST00000341594 MAP3K5Q99683 1374 aa4.08□□□□□ -1.76
SYNE1-201ENST00000341594 PCF11O94913 1555 aaKnown RBP4.08□□□□□ -1.76
SYNE1-201ENST00000341594 LUZP1Q86V48 1076 aa4.08□□□□□ -1.76
SYNE1-201ENST00000341594 KCNQ4P56696 695 aa4.08□□□□□ -1.76
SYNE1-201ENST00000341594 PKP1Q13835 747 aa4.08□□□□□ -1.76
SYNE1-201ENST00000341594 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP4.08□□□□□ -1.762e-6■■■■■ 47.6
SYNE1-201ENST00000341594 C16orf45Q96MC5 204 aaPredicted RBP4.08□□□□□ -1.76
SYNE1-201ENST00000341594 ZFC3H1O60293 1989 aaKnown RBP4.07□□□□□ -1.76
SYNE1-201ENST00000341594 MED4Q9NPJ6 270 aa4.07□□□□□ -1.76
SYNE1-201ENST00000341594 SPAG17Q6Q759 2223 aa4.07□□□□□ -1.76
SYNE1-201ENST00000341594 RNF168Q8IYW5 571 aaPredicted RBP4.07□□□□□ -1.76
SYNE1-201ENST00000341594 MORC2Q9Y6X9 1032 aaPredicted RBP4.07□□□□□ -1.76
SYNE1-201ENST00000341594 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP4.07□□□□□ -1.76
SYNE1-201ENST00000341594 BICD2Q8TD16 824 aa4.07□□□□□ -1.76
SYNE1-201ENST00000341594 FAM210AQ96ND0 272 aa4.07□□□□□ -1.76
SYNE1-201ENST00000341594 CSB-PGBD3P0DP91 1061 aa4.07□□□□□ -1.76
SYNE1-201ENST00000341594 NOLC1Q14978 699 aaKnown RBP eCLIP4.07□□□□□ -1.76
SYNE1-201ENST00000341594 FOXR1Q6PIV2 292 aa4.07□□□□□ -1.76
SYNE1-201ENST00000341594 FAM114A1Q8IWE2 563 aa4.07□□□□□ -1.76
SYNE1-201ENST00000341594 CCDC102AQ96A19 550 aa4.07□□□□□ -1.76
SYNE1-201ENST00000341594 MYCBPQ99417 103 aaPredicted RBP4.07□□□□□ -1.76
SYNE1-201ENST00000341594 GPATCH8Q9UKJ3 1502 aaKnown RBP4.07□□□□□ -1.76
SYNE1-201ENST00000341594 NKX1-1Q15270 411 aaPredicted RBP4.07□□□□□ -1.76
SYNE1-201ENST00000341594 PYCARDQ9ULZ3 195 aa4.07□□□□□ -1.76
SYNE1-201ENST00000341594 MAPK8IP1Q9UQF2 711 aa4.07□□□□□ -1.76
SYNE1-201ENST00000341594 GOLGA6L7A0A1B0GV03 622 aa4.07□□□□□ -1.76
SYNE1-201ENST00000341594 SRRM3A6NNA2 597 aaPredicted RBP4.07□□□□□ -1.76
SYNE1-201ENST00000341594 SMAD1Q15797 465 aaKnown RBP4.07□□□□□ -1.76
SYNE1-201ENST00000341594 CCDC70Q6NSX1 233 aa4.07□□□□□ -1.76
SYNE1-201ENST00000341594 PDCD11Q14690 1871 aaKnown RBP4.07□□□□□ -1.76
SYNE1-201ENST00000341594 TLDC2A0PJX2 215 aa4.07□□□□□ -1.76
SYNE1-201ENST00000341594 KDM2BQ8NHM5 1336 aa4.07□□□□□ -1.76
SYNE1-201ENST00000341594 KIF18AQ8NI77 898 aa4.07□□□□□ -1.76
SYNE1-201ENST00000341594 DIS3Q9Y2L1 958 aaKnown RBP4.07□□□□□ -1.76
SYNE1-201ENST00000341594 LRMPQ12912 555 aa4.07□□□□□ -1.76
SYNE1-201ENST00000341594 TMED1Q13445 227 aa4.07□□□□□ -1.76
SYNE1-201ENST00000341594 SLC12A5Q9H2X9 1139 aa4.07□□□□□ -1.76
SYNE1-201ENST00000341594 EVI5O60447 810 aa4.07□□□□□ -1.76
SYNE1-201ENST00000341594 PEX19P40855 299 aa4.07□□□□□ -1.76
SYNE1-201ENST00000341594 IL31Q6EBC2 164 aa4.07□□□□□ -1.76
SYNE1-201ENST00000341594 STK31Q9BXU1 1019 aa4.07□□□□□ -1.76
SYNE1-201ENST00000341594 RAPGEF6Q8TEU7 1601 aa4.07□□□□□ -1.76
SYNE1-201ENST00000341594 FMN2Q9NZ56 1722 aa4.07□□□□□ -1.76
SYNE1-201ENST00000341594 AKAP17AQ02040 695 aaKnown RBP4.07□□□□□ -1.76
SYNE1-201ENST00000341594 ANTXR1Q9H6X2 564 aa4.07□□□□□ -1.76
SYNE1-201ENST00000341594 ZNF644Q9H582 1327 aaPredicted RBP4.07□□□□□ -1.76
SYNE1-201ENST00000341594 KRT222Q8N1A0 295 aa4.07□□□□□ -1.76
SYNE1-201ENST00000341594 IFT81Q8WYA0 676 aa4.07□□□□□ -1.76
SYNE1-201ENST00000341594 ZC3H13Q5T200 1668 aaKnown RBP4.07□□□□□ -1.76
SYNE1-201ENST00000341594 IRX5P78411 483 aaPredicted RBP4.07□□□□□ -1.76
SYNE1-201ENST00000341594 PDLIM2Q96JY6 352 aa4.07□□□□□ -1.76
SYNE1-201ENST00000341594 SEPT11Q9NVA2 429 aaKnown RBP4.07□□□□□ -1.76
SYNE1-201ENST00000341594 SSH2Q76I76 1423 aa4.07□□□□□ -1.76
SYNE1-201ENST00000341594 ZEB2O60315 1214 aa4.07□□□□□ -1.76
SYNE1-201ENST00000341594 FXR1P51114 621 aaKnown RBP eCLIP4.07□□□□□ -1.76
SYNE1-201ENST00000341594 ZSCAN31Q96LW9 406 aaPredicted RBP4.07□□□□□ -1.76
SYNE1-201ENST00000341594 WDR33Q9C0J8 1336 aaKnown RBP4.07□□□□□ -1.76
SYNE1-201ENST00000341594 C3orf20Q8ND61 904 aa4.07□□□□□ -1.76
SYNE1-201ENST00000341594 RPGRQ92834 1020 aaKnown RBP4.07□□□□□ -1.76
SYNE1-201ENST00000341594 TMEM51Q9NW97 253 aa4.07□□□□□ -1.76
SYNE1-201ENST00000341594 VIMP08670 466 aaKnown RBP4.07□□□□□ -1.76
SYNE1-201ENST00000341594 SSTR3P32745 418 aaPredicted RBP4.07□□□□□ -1.76
SYNE1-201ENST00000341594 LCA5Q86VQ0 697 aa4.07□□□□□ -1.76
SYNE1-201ENST00000341594 ZMAT2Q96NC0 199 aaKnown RBP4.07□□□□□ -1.76
SYNE1-201ENST00000341594 POLR3AO14802 1390 aaPredicted RBP4.06□□□□□ -1.76
SYNE1-201ENST00000341594 BECN2A8MW95 431 aa4.06□□□□□ -1.76
SYNE1-201ENST00000341594 SH3BP5O60239 455 aa4.06□□□□□ -1.76
SYNE1-201ENST00000341594 NBPF9Q3BBW0 867 aa4.06□□□□□ -1.76
SYNE1-201ENST00000341594 RIOK3O14730 519 aaKnown RBP4.06□□□□□ -1.76
SYNE1-201ENST00000341594 MARCKSP29966 332 aaPredicted RBP4.06□□□□□ -1.76
SYNE1-201ENST00000341594 IFT140Q96RY7 1462 aa4.06□□□□□ -1.76
SYNE1-201ENST00000341594 SCN3AQ9NY46 2000 aa4.06□□□□□ -1.76
SYNE1-201ENST00000341594 LMO7Q8WWI1 1683 aa4.06□□□□□ -1.76
SYNE1-201ENST00000341594 BAG4O95429 457 aaKnown RBP4.06□□□□□ -1.76
SYNE1-201ENST00000341594 SEPT6Q14141 434 aa4.06□□□□□ -1.76
SYNE1-201ENST00000341594 SWT1Q5T5J6 900 aaKnown RBP4.06□□□□□ -1.76
SYNE1-201ENST00000341594 IQCDQ96DY2 449 aa4.06□□□□□ -1.76
SYNE1-201ENST00000341594 PSMB7Q99436 277 aa4.06□□□□□ -1.76
SYNE1-201ENST00000341594 A1CFQ9NQ94 594 aaKnown RBP4.06□□□□□ -1.76
SYNE1-201ENST00000341594 CAMSAP1Q5T5Y3 1602 aa4.06□□□□□ -1.76
Retrieved 100 of 20,778 RNA–protein pairs in 10 ms