RNA–Protein interactions for RNA: ENST00000339950.4

USP1-201, Transcript of ubiquitin specific peptidase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP1, Length 3,996 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP1-201ENST00000339950 PAG1Q9NWQ8 432 aa13.98□□□□□ -0.17
USP1-201ENST00000339950 FAM200AQ8TCP9 573 aa13.98□□□□□ -0.17
USP1-201ENST00000339950 ARHGEF10O15013 1369 aa13.98□□□□□ -0.17
USP1-201ENST00000339950 NUTM2BA6NNL0 878 aaPredicted RBP13.98□□□□□ -0.17
USP1-201ENST00000339950 NUTM2EB1AL46 878 aaPredicted RBP13.98□□□□□ -0.17
USP1-201ENST00000339950 RAD21O60216 631 aa13.98□□□□□ -0.17
USP1-201ENST00000339950 NUTM2AQ8IVF1 878 aaPredicted RBP13.98□□□□□ -0.17
USP1-201ENST00000339950 TTC41PQ6P2S7 1318 aa13.97□□□□□ -0.17
USP1-201ENST00000339950 CPLX3Q8WVH0 158 aa13.97□□□□□ -0.17
USP1-201ENST00000339950 CYP21A2P08686 494 aa13.97□□□□□ -0.17
USP1-201ENST00000339950 CFAP45Q9UL16 551 aa13.97□□□□□ -0.17
USP1-201ENST00000339950 A0A1B0GUL7 405 aa13.97□□□□□ -0.17
USP1-201ENST00000339950 RIOK3O14730 519 aaKnown RBP13.97□□□□□ -0.17
USP1-201ENST00000339950 TMC6Q7Z403 805 aa13.97□□□□□ -0.17
USP1-201ENST00000339950 U2AF2P26368 475 aaKnown RBP eCLIP13.96□□□□□ -0.17
USP1-201ENST00000339950 ADORA1P30542 326 aa13.96□□□□□ -0.17
USP1-201ENST00000339950 VPS37DQ86XT2 251 aa13.96□□□□□ -0.17
USP1-201ENST00000339950 PHKBQ93100 1093 aa13.96□□□□□ -0.17
USP1-201ENST00000339950 CWC25Q9NXE8 425 aaPredicted RBP13.96□□□□□ -0.17
USP1-201ENST00000339950 ACSBG1Q96GR2 724 aa13.96□□□□□ -0.17
USP1-201ENST00000339950 INCENPQ9NQS7 918 aa13.96□□□□□ -0.17
USP1-201ENST00000339950 TRMT112Q9UI30 125 aaKnown RBP13.96□□□□□ -0.17
USP1-201ENST00000339950 U3KPZ7 1027 aaPredicted RBP13.96□□□□□ -0.17
USP1-201ENST00000339950 ADAMTS2O95450 1211 aa13.96□□□□□ -0.18
USP1-201ENST00000339950 DEPDC5O75140 1603 aa13.96□□□□□ -0.18
USP1-201ENST00000339950 CFAP100Q494V2 611 aa13.95□□□□□ -0.18
USP1-201ENST00000339950 CPLX2Q6PUV4 134 aaKnown RBP13.95□□□□□ -0.18
USP1-201ENST00000339950 MIGA1Q8NAN2 632 aa13.95□□□□□ -0.18
USP1-201ENST00000339950 USP28Q96RU2 1077 aa13.95□□□□□ -0.18
USP1-201ENST00000339950 ZSWIM6Q9HCJ5 1215 aa13.95□□□□□ -0.18
USP1-201ENST00000339950 LMTK2Q8IWU2 1503 aa13.95□□□□□ -0.18
USP1-201ENST00000339950 GOLGA8FQ08AF8 430 aa13.95□□□□□ -0.18
USP1-201ENST00000339950 GOLGA8DPQ0D2H9 430 aa13.95□□□□□ -0.18
USP1-201ENST00000339950 IFIT5Q13325 482 aaKnown RBP13.95□□□□□ -0.18
USP1-201ENST00000339950 KRT32Q14532 448 aa13.95□□□□□ -0.18
USP1-201ENST00000339950 HS1BP3Q53T59 392 aa13.95□□□□□ -0.18
USP1-201ENST00000339950 MTERF4Q7Z6M4 381 aaKnown RBP13.95□□□□□ -0.18
USP1-201ENST00000339950 AIFM3Q96NN9 605 aa13.95□□□□□ -0.18
USP1-201ENST00000339950 IMMTQ16891 758 aaKnown RBP13.95□□□□□ -0.18
USP1-201ENST00000339950 KIF24Q5T7B8 1368 aa13.95□□□□□ -0.18
USP1-201ENST00000339950 ZC3H13Q5T200 1668 aaKnown RBP13.94□□□□□ -0.18
USP1-201ENST00000339950 ZNF213O14771 459 aa13.94□□□□□ -0.18
USP1-201ENST00000339950 TPM4P67936 248 aa13.94□□□□□ -0.18
USP1-201ENST00000339950 SLC9C2Q5TAH2 1124 aa13.94□□□□□ -0.18
USP1-201ENST00000339950 KIF6Q6ZMV9 814 aa13.94□□□□□ -0.18
USP1-201ENST00000339950 CLEC17AQ6ZS10 378 aa13.94□□□□□ -0.18
USP1-201ENST00000339950 ZNF396Q96N95 335 aaPredicted RBP13.94□□□□□ -0.18
USP1-201ENST00000339950 METTL22Q9BUU2 404 aaPredicted RBP13.94□□□□□ -0.18
USP1-201ENST00000339950 ZNF500O60304 480 aaPredicted RBP13.94□□□□□ -0.18
USP1-201ENST00000339950 TAF5LO75529 589 aa13.94□□□□□ -0.18
USP1-201ENST00000339950 POLA2Q14181 598 aa13.94□□□□□ -0.18
USP1-201ENST00000339950 GPIHBP1Q8IV16 184 aa13.94□□□□□ -0.18
USP1-201ENST00000339950 RGS12O14924 1447 aa13.94□□□□□ -0.18
USP1-201ENST00000339950 SKILP12757 684 aa13.94□□□□□ -0.18
USP1-201ENST00000339950 HMGN5P82970 282 aaKnown RBP13.94□□□□□ -0.18
USP1-201ENST00000339950 AKAP17AQ02040 695 aaKnown RBP13.94□□□□□ -0.18
USP1-201ENST00000339950 CEP57L1Q8IYX8 460 aa13.94□□□□□ -0.18
USP1-201ENST00000339950 TDO2P48775 406 aa13.93□□□□□ -0.18
USP1-201ENST00000339950 SLC52A2Q9HAB3 445 aa13.93□□□□□ -0.18
USP1-201ENST00000339950 ADCY9O60503 1353 aa13.93□□□□□ -0.18
USP1-201ENST00000339950 DYNC1I1O14576 645 aa13.93□□□□□ -0.18
USP1-201ENST00000339950 SCRN1Q12765 414 aa13.93□□□□□ -0.18
USP1-201ENST00000339950 AIDAQ96BJ3 306 aa13.93□□□□□ -0.18
USP1-201ENST00000339950 ADGRB2O60241 1585 aa13.93□□□□□ -0.18
USP1-201ENST00000339950 DIP2CQ9Y2E4 1556 aa13.93□□□□□ -0.18
USP1-201ENST00000339950 PRC1O43663 620 aa13.93□□□□□ -0.18
USP1-201ENST00000339950 MCM5P33992 734 aa13.93□□□□□ -0.18
USP1-201ENST00000339950 NECTIN1Q15223 517 aa13.93□□□□□ -0.18
USP1-201ENST00000339950 MAP4K1Q92918 833 aa13.93□□□□□ -0.18
USP1-201ENST00000339950 ZFP91Q96JP5 570 aaPredicted RBP13.93□□□□□ -0.18
USP1-201ENST00000339950 MPHOSPH8Q99549 860 aa13.93□□□□□ -0.18
USP1-201ENST00000339950 EIF2AK3Q9NZJ5 1116 aaKnown RBP13.93□□□□□ -0.18
USP1-201ENST00000339950 NPHP3Q7Z494 1330 aa13.93□□□□□ -0.18
USP1-201ENST00000339950 CFAP74Q9C0B2 1584 aa13.93□□□□□ -0.18
USP1-201ENST00000339950 ARHGAP31Q2M1Z3 1444 aa13.92□□□□□ -0.18
USP1-201ENST00000339950 ZAP70P43403 619 aa13.92□□□□□ -0.18
USP1-201ENST00000339950 KCNQ4P56696 695 aa13.92□□□□□ -0.18
USP1-201ENST00000339950 PDLIM2Q96JY6 352 aa13.92□□□□□ -0.18
USP1-201ENST00000339950 TTC14Q96N46 770 aa13.92□□□□□ -0.18
USP1-201ENST00000339950 TMOD3Q9NYL9 352 aa13.92□□□□□ -0.18
USP1-201ENST00000339950 BBXQ8WY36 941 aaPredicted RBP13.92□□□□□ -0.18
USP1-201ENST00000339950 ADD1P35611 737 aaKnown RBP13.92□□□□□ -0.18
USP1-201ENST00000339950 PTPN14Q15678 1187 aa13.92□□□□□ -0.18
USP1-201ENST00000339950 ARHGEF25Q86VW2 580 aa13.92□□□□□ -0.18
USP1-201ENST00000339950 SLC26A6Q9BXS9 759 aa13.92□□□□□ -0.18
USP1-201ENST00000339950 LRP2BPQ9P2M1 347 aa13.92□□□□□ -0.18
USP1-201ENST00000339950 B4E1Z4 1266 aa13.91□□□□□ -0.18
USP1-201ENST00000339950 COBLO75128 1261 aa13.91□□□□□ -0.18
USP1-201ENST00000339950 DDX19AQ9NUU7 478 aaKnown RBP13.91□□□□□ -0.18
USP1-201ENST00000339950 CEP170BQ9Y4F5 1589 aaPredicted RBP13.91□□□□□ -0.18
USP1-201ENST00000339950 DHX32Q7L7V1 743 aaKnown RBP13.91□□□□□ -0.18
USP1-201ENST00000339950 DNAJC10Q8IXB1 793 aa13.91□□□□□ -0.18
USP1-201ENST00000339950 PPLO60437 1756 aa13.91□□□□□ -0.18
USP1-201ENST00000339950 AP5Z1O43299 807 aa13.91□□□□□ -0.18
USP1-201ENST00000339950 C11orf57Q6ZUT1 292 aaPredicted RBP13.91□□□□□ -0.18
USP1-201ENST00000339950 IFNKQ9P0W0 207 aa13.91□□□□□ -0.18
USP1-201ENST00000339950 PRDM1O75626 825 aa13.9□□□□□ -0.18
USP1-201ENST00000339950 PTPN12Q05209 780 aaKnown RBP13.9□□□□□ -0.18
USP1-201ENST00000339950 ZCRB1Q8TBF4 217 aaKnown RBP13.9□□□□□ -0.18
USP1-201ENST00000339950 STAMQ92783 540 aa13.9□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms