RNA–Protein interactions for RNA: ENST00000338585.6

MCF2-201, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene MCF2, Length 2,826 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-201ENST00000338585 ZNF609O15014 1411 aa5.06□□□□□ -1.6
MCF2-201ENST00000338585 A0A1B0GUL7 405 aa5.05□□□□□ -1.6
MCF2-201ENST00000338585 ADORA1P30542 326 aa5.05□□□□□ -1.6
MCF2-201ENST00000338585 NFIXQ14938 502 aa5.05□□□□□ -1.6
MCF2-201ENST00000338585 NBPF5PQ86XG9 351 aaPredicted RBP5.05□□□□□ -1.6
MCF2-201ENST00000338585 HELBQ8NG08 1087 aaPredicted RBP5.05□□□□□ -1.6
MCF2-201ENST00000338585 GPATCH3Q96I76 525 aa5.05□□□□□ -1.6
MCF2-201ENST00000338585 IPO9Q96P70 1041 aaKnown RBP5.05□□□□□ -1.6
MCF2-201ENST00000338585 CEP126Q9P2H0 1117 aa5.05□□□□□ -1.6
MCF2-201ENST00000338585 RIPOR2Q9Y4F9 1068 aa5.05□□□□□ -1.6
MCF2-201ENST00000338585 COL24A1Q17RW2 1714 aa5.05□□□□□ -1.6
MCF2-201ENST00000338585 TNS1Q9HBL0 1735 aaKnown RBP5.05□□□□□ -1.6
MCF2-201ENST00000338585 LAMB2P55268 1798 aa5.05□□□□□ -1.6
MCF2-201ENST00000338585 SNAP23O00161 211 aa5.05□□□□□ -1.6
MCF2-201ENST00000338585 ERC2O15083 957 aa5.05□□□□□ -1.6
MCF2-201ENST00000338585 PLSCR1O15162 318 aa5.05□□□□□ -1.6
MCF2-201ENST00000338585 RGL2O15211 777 aa5.05□□□□□ -1.6
MCF2-201ENST00000338585 GYS1P13807 737 aa5.05□□□□□ -1.6
MCF2-201ENST00000338585 GTF2E1P29083 439 aaPredicted RBP5.05□□□□□ -1.6
MCF2-201ENST00000338585 SLC4A3P48751 1232 aa5.05□□□□□ -1.6
MCF2-201ENST00000338585 METTL24Q5JXM2 366 aa5.05□□□□□ -1.6
MCF2-201ENST00000338585 CDAN1Q8IWY9 1227 aa5.05□□□□□ -1.6
MCF2-201ENST00000338585 FAM163AQ96GL9 167 aaPredicted RBP5.05□□□□□ -1.6
MCF2-201ENST00000338585 CNNM1Q9NRU3 951 aa5.05□□□□□ -1.6
MCF2-201ENST00000338585 LRP5O75197 1615 aa5.05□□□□□ -1.6
MCF2-201ENST00000338585 TAF1P21675 1872 aa5.05□□□□□ -1.6
MCF2-201ENST00000338585 AK9Q5TCS8 1911 aa5.05□□□□□ -1.6
MCF2-201ENST00000338585 SSFA2P28290 1259 aa5.05□□□□□ -1.6
MCF2-201ENST00000338585 CCDC152Q4G0S7 254 aa5.05□□□□□ -1.6
MCF2-201ENST00000338585 CASC1Q6TDU7 716 aa5.05□□□□□ -1.6
MCF2-201ENST00000338585 CNTROBQ8N137 903 aa5.05□□□□□ -1.6
MCF2-201ENST00000338585 VGLL2Q8N8G2 317 aa5.05□□□□□ -1.6
MCF2-201ENST00000338585 ESYT1Q9BSJ8 1104 aa5.05□□□□□ -1.6
MCF2-201ENST00000338585 GPR108Q9NPR9 543 aa5.05□□□□□ -1.6
MCF2-201ENST00000338585 SPEF2Q9C093 1822 aa5.04□□□□□ -1.6
MCF2-201ENST00000338585 CHGBP05060 677 aa5.04□□□□□ -1.6
MCF2-201ENST00000338585 ATP5JP18859 108 aa5.04□□□□□ -1.6
MCF2-201ENST00000338585 ATP2B3Q16720 1220 aa5.04□□□□□ -1.6
MCF2-201ENST00000338585 TFCP2L1Q9NZI6 479 aa5.04□□□□□ -1.6
MCF2-201ENST00000338585 FBXO3Q9UK99 471 aa5.04□□□□□ -1.6
MCF2-201ENST00000338585 CASZ1Q86V15 1759 aa5.04□□□□□ -1.6
MCF2-201ENST00000338585 TNRC6CQ9HCJ0 1690 aaKnown RBP5.04□□□□□ -1.6
MCF2-201ENST00000338585 CARMIL3Q8ND23 1372 aa5.04□□□□□ -1.6
MCF2-201ENST00000338585 WTIPA6NIX2 430 aaPredicted RBP5.04□□□□□ -1.6
MCF2-201ENST00000338585 TAF5LO75529 589 aa5.04□□□□□ -1.6
MCF2-201ENST00000338585 CD44P16070 742 aaKnown RBP5.04□□□□□ -1.6
MCF2-201ENST00000338585 RBM25P49756 843 aaKnown RBP5.04□□□□□ -1.6
MCF2-201ENST00000338585 EN1Q05925 392 aaPredicted RBP5.04□□□□□ -1.6
MCF2-201ENST00000338585 DDR1Q08345 913 aa5.04□□□□□ -1.6
MCF2-201ENST00000338585 SF3B3Q15393 1217 aaKnown RBP5.04□□□□□ -1.6
MCF2-201ENST00000338585 EZH2Q15910 746 aaKnown RBP5.04□□□□□ -1.6
MCF2-201ENST00000338585 SLC10A5Q5PT55 438 aa5.04□□□□□ -1.6
MCF2-201ENST00000338585 CWC27Q6UX04 472 aaKnown RBP5.04□□□□□ -1.6
MCF2-201ENST00000338585 TPTE2Q6XPS3 522 aa5.04□□□□□ -1.6
MCF2-201ENST00000338585 SLC51AQ86UW1 340 aa5.04□□□□□ -1.6
MCF2-201ENST00000338585 COL23A1Q86Y22 540 aaPredicted RBP5.04□□□□□ -1.6
MCF2-201ENST00000338585 CELF1Q92879 486 aaKnown RBP5.04□□□□□ -1.6
MCF2-201ENST00000338585 EVI5LQ96CN4 794 aa5.04□□□□□ -1.6
MCF2-201ENST00000338585 XAGE2Q96GT9 111 aa5.04□□□□□ -1.6
MCF2-201ENST00000338585 DNAJC2Q99543 621 aaKnown RBP5.04□□□□□ -1.6
MCF2-201ENST00000338585 KIF2CQ99661 725 aa5.04□□□□□ -1.6
MCF2-201ENST00000338585 USP26Q9BXU7 913 aa5.04□□□□□ -1.6
MCF2-201ENST00000338585 NYXQ9GZU5 481 aa5.04□□□□□ -1.6
MCF2-201ENST00000338585 RTL9Q8NET4 1388 aa5.03□□□□□ -1.6
MCF2-201ENST00000338585 NPHP1O15259 732 aa5.03□□□□□ -1.6
MCF2-201ENST00000338585 PDE8BO95263 885 aa5.03□□□□□ -1.6
MCF2-201ENST00000338585 SCARF1Q14162 830 aa5.03□□□□□ -1.6
MCF2-201ENST00000338585 PRR5LQ6MZQ0 368 aa5.03□□□□□ -1.6
MCF2-201ENST00000338585 PI16Q6UXB8 463 aa5.03□□□□□ -1.6
MCF2-201ENST00000338585 DDX46Q7L014 1031 aaKnown RBP5.03□□□□□ -1.6
MCF2-201ENST00000338585 FAM227BQ96M60 508 aa5.03□□□□□ -1.6
MCF2-201ENST00000338585 MPHOSPH8Q99549 860 aa5.03□□□□□ -1.6
MCF2-201ENST00000338585 ANO8Q9HCE9 1232 aaPredicted RBP5.03□□□□□ -1.6
MCF2-201ENST00000338585 SNRKQ9NRH2 765 aa5.03□□□□□ -1.6
MCF2-201ENST00000338585 HSP90B1P14625 803 aaKnown RBP5.03□□□□□ -1.6
MCF2-201ENST00000338585 TM4SF1P30408 202 aa5.03□□□□□ -1.6
MCF2-201ENST00000338585 IGHMBP2P38935 993 aaKnown RBP5.03□□□□□ -1.6
MCF2-201ENST00000338585 SLFNL1Q499Z3 407 aa5.03□□□□□ -1.6
MCF2-201ENST00000338585 GORABQ5T7V8 394 aa5.03□□□□□ -1.6
MCF2-201ENST00000338585 CNBD1Q8NA66 436 aa5.03□□□□□ -1.6
MCF2-201ENST00000338585 NLRP3Q96P20 1036 aa5.03□□□□□ -1.6
MCF2-201ENST00000338585 HAUS7Q99871 368 aa5.03□□□□□ -1.6
MCF2-201ENST00000338585 FSD1Q9BTV5 496 aa5.03□□□□□ -1.6
MCF2-201ENST00000338585 ANO2Q9NQ90 1003 aa5.03□□□□□ -1.6
MCF2-201ENST00000338585 DIAPH3Q9NSV4 1193 aa5.03□□□□□ -1.6
MCF2-201ENST00000338585 AKAP2Q9Y2D5 859 aa5.03□□□□□ -1.6
MCF2-201ENST00000338585 MROH5Q6ZUA9 1318 aa5.02□□□□□ -1.61
MCF2-201ENST00000338585 PNPLA7Q6ZV29 1317 aa5.02□□□□□ -1.61
MCF2-201ENST00000338585 A0A0D9SFI3 127 aa5.02□□□□□ -1.61
MCF2-201ENST00000338585 GOLIM4O00461 696 aa5.02□□□□□ -1.61
MCF2-201ENST00000338585 SGSM2O43147 1006 aa5.02□□□□□ -1.61
MCF2-201ENST00000338585 REC8O95072 547 aa5.02□□□□□ -1.61
MCF2-201ENST00000338585 SERPINB2P05120 415 aa5.02□□□□□ -1.61
MCF2-201ENST00000338585 FGFR2P21802 821 aa5.02□□□□□ -1.61
MCF2-201ENST00000338585 CHRNDQ07001 517 aa5.02□□□□□ -1.61
MCF2-201ENST00000338585 NMIQ13287 307 aaPredicted RBP5.02□□□□□ -1.61
MCF2-201ENST00000338585 DEFB132Q7Z7B7 95 aa5.02□□□□□ -1.61
MCF2-201ENST00000338585 ANKRD18AQ8IVF6 992 aa5.02□□□□□ -1.61
MCF2-201ENST00000338585 DDRGK1Q96HY6 314 aa5.02□□□□□ -1.61
MCF2-201ENST00000338585 CAMKK2Q96RR4 588 aa5.02□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 80.8 ms