RNA–Protein interactions for RNA: ENST00000335508.10

SF3B1-201, Transcript of splicing factor 3b subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3B1, Length 6,526 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-201ENST00000335508 KCNQ3O43525 872 aa8.05□□□□□ -1.12
SF3B1-201ENST00000335508 MYO1BO43795 1136 aa8.05□□□□□ -1.12
SF3B1-201ENST00000335508 BMP15O95972 392 aa8.05□□□□□ -1.12
SF3B1-201ENST00000335508 ALDH1B1P30837 517 aa8.05□□□□□ -1.12
SF3B1-201ENST00000335508 RNF113AO15541 343 aaKnown RBP8.05□□□□□ -1.12
SF3B1-201ENST00000335508 BBOX1O75936 387 aa8.05□□□□□ -1.12
SF3B1-201ENST00000335508 GSE1Q14687 1217 aa8.05□□□□□ -1.12
SF3B1-201ENST00000335508 NKX1-1Q15270 411 aaPredicted RBP8.05□□□□□ -1.12
SF3B1-201ENST00000335508 TNNI3KQ59H18 835 aa8.05□□□□□ -1.12
SF3B1-201ENST00000335508 MFSD6Q6ZSS7 791 aa8.05□□□□□ -1.12
SF3B1-201ENST00000335508 DBNDD2Q9BQY9 259 aa8.05□□□□□ -1.12
SF3B1-201ENST00000335508 BICC1Q9H694 974 aaKnown RBP8.05□□□□□ -1.12
SF3B1-201ENST00000335508 FPGT-TNNI3KV9GXZ4 949 aa8.05□□□□□ -1.12
SF3B1-201ENST00000335508 E9PCH4 1651 aa8.05□□□□□ -1.12
SF3B1-201ENST00000335508 IFIT3O14879 490 aaKnown RBP8.05□□□□□ -1.12
SF3B1-201ENST00000335508 NFKBIBQ15653 356 aa8.05□□□□□ -1.12
SF3B1-201ENST00000335508 SNX21Q969T3 373 aa8.05□□□□□ -1.12
SF3B1-201ENST00000335508 STAP2Q9UGK3 403 aa8.05□□□□□ -1.12
SF3B1-201ENST00000335508 TNNQ9UQP3 1299 aa8.05□□□□□ -1.12
SF3B1-201ENST00000335508 CAVIN2O95810 425 aa8.04□□□□□ -1.12
SF3B1-201ENST00000335508 CHMLP26374 656 aa8.04□□□□□ -1.12
SF3B1-201ENST00000335508 INTS4Q96HW7 963 aaKnown RBP8.04□□□□□ -1.12
SF3B1-201ENST00000335508 SPHKAPQ2M3C7 1700 aa8.04□□□□□ -1.12
SF3B1-201ENST00000335508 TRPM1Q7Z4N2 1603 aa8.04□□□□□ -1.12
SF3B1-201ENST00000335508 APBA3O96018 575 aa8.04□□□□□ -1.12
SF3B1-201ENST00000335508 TSR1Q2NL82 804 aaKnown RBP8.04□□□□□ -1.12
SF3B1-201ENST00000335508 SUCLG2Q96I99 432 aa8.04□□□□□ -1.12
SF3B1-201ENST00000335508 CRB1P82279 1406 aa8.04□□□□□ -1.12
SF3B1-201ENST00000335508 SEMA3EO15041 775 aa8.04□□□□□ -1.12
SF3B1-201ENST00000335508 SGSM2O43147 1006 aa8.04□□□□□ -1.12
SF3B1-201ENST00000335508 CYP7A1P22680 504 aa8.04□□□□□ -1.12
SF3B1-201ENST00000335508 IARSP41252 1262 aaKnown RBP8.04□□□□□ -1.12
SF3B1-201ENST00000335508 HCLS1P14317 486 aaPredicted RBP8.04□□□□□ -1.12
SF3B1-201ENST00000335508 HIBADHP31937 336 aaKnown RBP8.04□□□□□ -1.12
SF3B1-201ENST00000335508 MCM4P33991 863 aa8.04□□□□□ -1.12
SF3B1-201ENST00000335508 TIMM10P62072 90 aa8.04□□□□□ -1.12
SF3B1-201ENST00000335508 SASS6Q6UVJ0 657 aa8.04□□□□□ -1.12
SF3B1-201ENST00000335508 CATIPQ7Z7H3 387 aa8.04□□□□□ -1.12
SF3B1-201ENST00000335508 RAB34Q9BZG1 259 aa8.04□□□□□ -1.12
SF3B1-201ENST00000335508 RBM8AQ9Y5S9 174 aaKnown RBP8.04□□□□□ -1.12
SF3B1-201ENST00000335508 CCDC171Q6TFL3 1326 aa8.04□□□□□ -1.12
SF3B1-201ENST00000335508 FIBPO43427 364 aa8.03□□□□□ -1.12
SF3B1-201ENST00000335508 TTLL7Q6ZT98 887 aa8.03□□□□□ -1.12
SF3B1-201ENST00000335508 HELLSQ9NRZ9 838 aa8.03□□□□□ -1.12
SF3B1-201ENST00000335508 PNMA6EA0A0J9YXQ4 647 aa8.03□□□□□ -1.12
SF3B1-201ENST00000335508 PDE8BO95263 885 aa8.03□□□□□ -1.12
SF3B1-201ENST00000335508 BMP2KQ9NSY1 1161 aaPredicted RBP8.03□□□□□ -1.12
SF3B1-201ENST00000335508 CIAO1O76071 339 aa8.03□□□□□ -1.12
SF3B1-201ENST00000335508 TPM2P07951 284 aa8.03□□□□□ -1.12
SF3B1-201ENST00000335508 SLC12A7Q9Y666 1083 aa8.03□□□□□ -1.12
SF3B1-201ENST00000335508 CEP170BQ9Y4F5 1589 aaPredicted RBP8.03□□□□□ -1.12
SF3B1-201ENST00000335508 KDM2BQ8NHM5 1336 aa8.03□□□□□ -1.12
SF3B1-201ENST00000335508 PALLDQ8WX93 1383 aa8.03□□□□□ -1.12
SF3B1-201ENST00000335508 RANBP6O60518 1105 aaKnown RBP8.03□□□□□ -1.12
SF3B1-201ENST00000335508 NUP133Q8WUM0 1156 aa8.03□□□□□ -1.12
SF3B1-201ENST00000335508 EAF2Q96CJ1 260 aaPredicted RBP8.03□□□□□ -1.12
SF3B1-201ENST00000335508 RBM17Q96I25 401 aaKnown RBP8.03□□□□□ -1.12
SF3B1-201ENST00000335508 C8orf76Q96K31 380 aa8.03□□□□□ -1.12
SF3B1-201ENST00000335508 MAP1BP46821 2468 aaKnown RBP8.03□□□□□ -1.12
SF3B1-201ENST00000335508 TSPY2A6NKD2 308 aa8.03□□□□□ -1.12
SF3B1-201ENST00000335508 RGL2O15211 777 aa8.03□□□□□ -1.12
SF3B1-201ENST00000335508 LDHBP07195 334 aaKnown RBP8.03□□□□□ -1.12
SF3B1-201ENST00000335508 CALM1P0DP23 149 aa8.03□□□□□ -1.12
SF3B1-201ENST00000335508 CALM2P0DP24 149 aa8.03□□□□□ -1.12
SF3B1-201ENST00000335508 CALM3P0DP25 149 aa8.03□□□□□ -1.12
SF3B1-201ENST00000335508 MRE11P49959 708 aa8.03□□□□□ -1.12
SF3B1-201ENST00000335508 FOXD4L5Q5VV16 416 aaPredicted RBP8.03□□□□□ -1.12
SF3B1-201ENST00000335508 FOXD4L4Q8WXT5 416 aaPredicted RBP8.03□□□□□ -1.12
SF3B1-201ENST00000335508 BRF1Q92994 677 aa8.03□□□□□ -1.12
SF3B1-201ENST00000335508 ATP2B1P20020 1258 aa8.03□□□□□ -1.12
SF3B1-201ENST00000335508 CRKLP46109 303 aaKnown RBP8.03□□□□□ -1.12
SF3B1-201ENST00000335508 RBM25P49756 843 aaKnown RBP8.03□□□□□ -1.12
SF3B1-201ENST00000335508 BARGINQ6ZT62 677 aa8.03□□□□□ -1.12
SF3B1-201ENST00000335508 DHX32Q7L7V1 743 aaKnown RBP8.03□□□□□ -1.12
SF3B1-201ENST00000335508 GGA1Q9UJY5 639 aa8.03□□□□□ -1.12
SF3B1-201ENST00000335508 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP8.02□□□□□ -1.13
SF3B1-201ENST00000335508 TPD52L1Q16890 204 aaPredicted RBP8.02□□□□□ -1.13
SF3B1-201ENST00000335508 GJD4Q96KN9 370 aaPredicted RBP8.02□□□□□ -1.13
SF3B1-201ENST00000335508 MYO3AQ8NEV4 1616 aa8.02□□□□□ -1.13
SF3B1-201ENST00000335508 CAMSAP1Q5T5Y3 1602 aa8.02□□□□□ -1.13
SF3B1-201ENST00000335508 H7C1W4 665 aa8.02□□□□□ -1.13
SF3B1-201ENST00000335508 JARID2Q92833 1246 aaPredicted RBP8.02□□□□□ -1.13
SF3B1-201ENST00000335508 TBC1D2Q9BYX2 928 aa8.02□□□□□ -1.13
SF3B1-201ENST00000335508 FAM13BQ9NYF5 915 aa8.02□□□□□ -1.13
SF3B1-201ENST00000335508 DIP2AQ14689 1571 aa8.02□□□□□ -1.13
SF3B1-201ENST00000335508 H0YIN7 160 aa8.02□□□□□ -1.13
SF3B1-201ENST00000335508 TFCP2Q12800 502 aa8.02□□□□□ -1.13
SF3B1-201ENST00000335508 CCAR1Q8IX12 1150 aaKnown RBP8.02□□□□□ -1.13
SF3B1-201ENST00000335508 HOOK2Q96ED9 719 aa8.02□□□□□ -1.13
SF3B1-201ENST00000335508 NARFQ9UHQ1 456 aa8.02□□□□□ -1.13
SF3B1-201ENST00000335508 CEP131Q9UPN4 1083 aa8.02□□□□□ -1.13
SF3B1-201ENST00000335508 AFF2P51816 1311 aa8.02□□□□□ -1.13
SF3B1-201ENST00000335508 TRAK2O60296 914 aa8.02□□□□□ -1.13
SF3B1-201ENST00000335508 STX8Q9UNK0 236 aa8.02□□□□□ -1.13
SF3B1-201ENST00000335508 ME1P48163 572 aa8.02□□□□□ -1.13
SF3B1-201ENST00000335508 ATP2B2Q01814 1243 aa8.02□□□□□ -1.13
SF3B1-201ENST00000335508 ORC3Q9UBD5 711 aaPredicted RBP8.02□□□□□ -1.13
SF3B1-201ENST00000335508 HELBQ8NG08 1087 aaPredicted RBP8.01□□□□□ -1.13
SF3B1-201ENST00000335508 ZSCAN16Q9H4T2 348 aaPredicted RBP8.01□□□□□ -1.13
SF3B1-201ENST00000335508 SLC27A3Q5K4L6 730 aa8.01□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 75.2 ms