RNA–Protein interactions for RNA: ENST00000326004.4

HMGB1-201, Transcript of high mobility group box 1, humanhuman

TSL 3 BASIC

Gene HMGB1, Length 821 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-201ENST00000326004 SALL4Q9UJQ4 1053 aa5.73□□□□□ -1.49
HMGB1-201ENST00000326004 GGA1Q9UJY5 639 aa5.73□□□□□ -1.49
HMGB1-201ENST00000326004 ELOA3CA0A087WX78 387 aaPredicted RBP5.72□□□□□ -1.49
HMGB1-201ENST00000326004 LOC102724428A0A0B4J2F2 783 aa5.72□□□□□ -1.49
HMGB1-201ENST00000326004 ELOA3DA6NLF2 546 aaPredicted RBP5.72□□□□□ -1.49
HMGB1-201ENST00000326004 NEURL1BA8MQ27 555 aa5.72□□□□□ -1.49
HMGB1-201ENST00000326004 SLURP2P0DP57 97 aa5.72□□□□□ -1.49
HMGB1-201ENST00000326004 ADH7P40394 386 aa5.72□□□□□ -1.49
HMGB1-201ENST00000326004 SIK1P57059 783 aa5.72□□□□□ -1.49
HMGB1-201ENST00000326004 ELOA3BQ3SY89 546 aa5.72□□□□□ -1.49
HMGB1-201ENST00000326004 USPL1Q5W0Q7 1092 aa5.72□□□□□ -1.49
HMGB1-201ENST00000326004 TREML4Q6UXN2 200 aa5.72□□□□□ -1.49
HMGB1-201ENST00000326004 FCHSD1Q86WN1 690 aa5.72□□□□□ -1.49
HMGB1-201ENST00000326004 NCAPG2Q86XI2 1143 aa5.72□□□□□ -1.49
HMGB1-201ENST00000326004 ELOA3Q8NG57 546 aa5.72□□□□□ -1.49
HMGB1-201ENST00000326004 RBSNQ9H1K0 784 aa5.72□□□□□ -1.49
HMGB1-201ENST00000326004 IGFLR1Q9H665 355 aa5.72□□□□□ -1.49
HMGB1-201ENST00000326004 LRRC4BQ9NT99 713 aa5.72□□□□□ -1.49
HMGB1-201ENST00000326004 NLRP2Q9NX02 1062 aa5.72□□□□□ -1.49
HMGB1-201ENST00000326004 KANSL3Q9P2N6 904 aa5.72□□□□□ -1.49
HMGB1-201ENST00000326004 ZBTB42B2RXF5 422 aa5.71□□□□□ -1.5
HMGB1-201ENST00000326004 GIPC1O14908 333 aa5.71□□□□□ -1.5
HMGB1-201ENST00000326004 GHRHP01286 108 aa5.71□□□□□ -1.5
HMGB1-201ENST00000326004 ALAS2P22557 587 aa5.71□□□□□ -1.5
HMGB1-201ENST00000326004 GMPRP36959 345 aa5.71□□□□□ -1.5
HMGB1-201ENST00000326004 XPCQ01831 940 aaPredicted RBP5.71□□□□□ -1.5
HMGB1-201ENST00000326004 TBC1D8BQ0IIM8 1120 aa5.71□□□□□ -1.5
HMGB1-201ENST00000326004 ACDQ96AP0 544 aa5.71□□□□□ -1.5
HMGB1-201ENST00000326004 NSUN5Q96P11 429 aaKnown RBP5.71□□□□□ -1.5
HMGB1-201ENST00000326004 NPHS2Q9NP85 383 aa5.71□□□□□ -1.5
HMGB1-201ENST00000326004 WWC3Q9ULE0 1092 aa5.71□□□□□ -1.5
HMGB1-201ENST00000326004 SLC6A14Q9UN76 642 aa5.71□□□□□ -1.5
HMGB1-201ENST00000326004 SPG7Q9UQ90 795 aa5.71□□□□□ -1.5
HMGB1-201ENST00000326004 POLR3DP05423 398 aaPredicted RBP5.7□□□□□ -1.5
HMGB1-201ENST00000326004 EPXP11678 715 aa5.7□□□□□ -1.5
HMGB1-201ENST00000326004 GNA15P30679 374 aa5.7□□□□□ -1.5
HMGB1-201ENST00000326004 COL13A1Q5TAT6 717 aaPredicted RBP5.7□□□□□ -1.5
HMGB1-201ENST00000326004 KIAA0319Q5VV43 1072 aa5.7□□□□□ -1.5
HMGB1-201ENST00000326004 CEP120Q8N960 986 aa5.7□□□□□ -1.5
HMGB1-201ENST00000326004 DUSP9Q99956 384 aaKnown RBP5.7□□□□□ -1.5
HMGB1-201ENST00000326004 SRCIN1Q9C0H9 1055 aa5.7□□□□□ -1.5
HMGB1-201ENST00000326004 FRRS1LQ9P0K9 344 aa5.7□□□□□ -1.5
HMGB1-201ENST00000326004 PARP2Q9UGN5 583 aa5.7□□□□□ -1.5
HMGB1-201ENST00000326004 GADD45BO75293 160 aaPredicted RBP5.69□□□□□ -1.5
HMGB1-201ENST00000326004 EIF2AK2P19525 551 aaKnown RBP5.69□□□□□ -1.5
HMGB1-201ENST00000326004 DAB2P98082 770 aa5.69□□□□□ -1.5
HMGB1-201ENST00000326004 TAGLNQ01995 201 aaKnown RBP5.69□□□□□ -1.5
HMGB1-201ENST00000326004 MLLT1Q03111 559 aaPredicted RBP5.69□□□□□ -1.5
HMGB1-201ENST00000326004 LARP7Q4G0J3 582 aaKnown RBP eCLIP5.69□□□□□ -1.5
HMGB1-201ENST00000326004 LCE2CQ5TA81 110 aa5.69□□□□□ -1.5
HMGB1-201ENST00000326004 PEAR1Q5VY43 1037 aaPredicted RBP5.69□□□□□ -1.5
HMGB1-201ENST00000326004 KANK3Q6NY19 840 aa5.69□□□□□ -1.5
HMGB1-201ENST00000326004 TMC4Q7Z404 712 aa5.69□□□□□ -1.5
HMGB1-201ENST00000326004 FAM35AQ86V20 835 aa5.69□□□□□ -1.5
HMGB1-201ENST00000326004 EPS8L3Q8TE67 593 aaKnown RBP5.69□□□□□ -1.5
HMGB1-201ENST00000326004 SETDB2Q96T68 719 aa5.69□□□□□ -1.5
HMGB1-201ENST00000326004 SUV39H2Q9H5I1 410 aa5.69□□□□□ -1.5
HMGB1-201ENST00000326004 TRAK1Q9UPV9 953 aa5.69□□□□□ -1.5
HMGB1-201ENST00000326004 A0A1W2PP55 124 aa5.68□□□□□ -1.5
HMGB1-201ENST00000326004 J3QW42 95 aa5.68□□□□□ -1.5
HMGB1-201ENST00000326004 OIP5O43482 229 aa5.68□□□□□ -1.5
HMGB1-201ENST00000326004 SMNDC1O75940 238 aaKnown RBP eCLIP5.68□□□□□ -1.5
HMGB1-201ENST00000326004 BCRP11274 1271 aa5.68□□□□□ -1.5
HMGB1-201ENST00000326004 CPB1P15086 417 aa5.68□□□□□ -1.5
HMGB1-201ENST00000326004 VAMP1P23763 118 aa5.68□□□□□ -1.5
HMGB1-201ENST00000326004 IRS1P35568 1242 aa5.68□□□□□ -1.5
HMGB1-201ENST00000326004 RBM25P49756 843 aaKnown RBP5.68□□□□□ -1.5
HMGB1-201ENST00000326004 PSMD2Q13200 908 aa5.68□□□□□ -1.5
HMGB1-201ENST00000326004 LCE2AQ5TA79 106 aaPredicted RBP5.68□□□□□ -1.5
HMGB1-201ENST00000326004 HFE2Q6ZVN8 426 aa5.68□□□□□ -1.5
HMGB1-201ENST00000326004 EDARADDQ8WWZ3 215 aa5.68□□□□□ -1.5
HMGB1-201ENST00000326004 TTC9Q92623 222 aa5.68□□□□□ -1.5
HMGB1-201ENST00000326004 OSMRQ99650 979 aa5.68□□□□□ -1.5
HMGB1-201ENST00000326004 PBX4Q9BYU1 374 aa5.68□□□□□ -1.5
HMGB1-201ENST00000326004 EHD4Q9H223 541 aa5.68□□□□□ -1.5
HMGB1-201ENST00000326004 MRS2Q9HD23 443 aa5.68□□□□□ -1.5
HMGB1-201ENST00000326004 DZANK1Q9NVP4 752 aa5.68□□□□□ -1.5
HMGB1-201ENST00000326004 PPP4R2Q9NY27 417 aa5.68□□□□□ -1.5
HMGB1-201ENST00000326004 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP5.68□□□□□ -1.5
HMGB1-201ENST00000326004 SORBS3O60504 671 aa5.67□□□□□ -1.5
HMGB1-201ENST00000326004 PERM1Q5SV97 790 aa5.67□□□□□ -1.5
HMGB1-201ENST00000326004 PSAPL1Q6NUJ1 521 aa5.67□□□□□ -1.5
HMGB1-201ENST00000326004 PRPF40BQ6NWY9 871 aaKnown RBP5.67□□□□□ -1.5
HMGB1-201ENST00000326004 ELMSAN1Q6PJG2 1045 aa5.67□□□□□ -1.5
HMGB1-201ENST00000326004 CACTIN-AS1Q8N1I8 211 aa5.67□□□□□ -1.5
HMGB1-201ENST00000326004 MICALL1Q8N3F8 863 aa5.67□□□□□ -1.5
HMGB1-201ENST00000326004 TMEM102Q8N9M5 508 aaPredicted RBP5.67□□□□□ -1.5
HMGB1-201ENST00000326004 GALNT6Q8NCL4 622 aa5.67□□□□□ -1.5
HMGB1-201ENST00000326004 PLD4Q96BZ4 506 aa5.67□□□□□ -1.5
HMGB1-201ENST00000326004 LPIN3Q9BQK8 851 aa5.67□□□□□ -1.5
HMGB1-201ENST00000326004 ZKSCAN3Q9BRR0 538 aa5.67□□□□□ -1.5
HMGB1-201ENST00000326004 C12orf49Q9H741 205 aa5.67□□□□□ -1.5
HMGB1-201ENST00000326004 LATS2Q9NRM7 1088 aa5.67□□□□□ -1.5
HMGB1-201ENST00000326004 NAGPAQ9UK23 515 aa5.67□□□□□ -1.5
HMGB1-201ENST00000326004 AK5Q9Y6K8 562 aa5.67□□□□□ -1.5
HMGB1-201ENST00000326004 NFKBIEO00221 500 aa5.66□□□□□ -1.5
HMGB1-201ENST00000326004 WIPF1O43516 503 aa5.66□□□□□ -1.5
HMGB1-201ENST00000326004 CELA2BP08218 269 aaPredicted RBP5.66□□□□□ -1.5
HMGB1-201ENST00000326004 EIF4BP23588 611 aaKnown RBP5.66□□□□□ -1.5
HMGB1-201ENST00000326004 MAP3K10Q02779 954 aa5.66□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 47 ms