RNA–Protein interactions for RNA: ENST00000308508.5

CSPG4-201, Transcript of chondroitin sulfate proteoglycan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSPG4, Length 8,290 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4-201ENST00000308508 CCDC42Q96M95 316 aa15.72■□□□□ 0.11
CSPG4-201ENST00000308508 CNPY2Q9Y2B0 182 aa15.72■□□□□ 0.11
CSPG4-201ENST00000308508 NKIRAS1Q9NYS0 192 aa15.72■□□□□ 0.11
CSPG4-201ENST00000308508 NEDD9Q14511 834 aa15.72■□□□□ 0.11
CSPG4-201ENST00000308508 ERCC6LQ2NKX8 1250 aa15.72■□□□□ 0.11
CSPG4-201ENST00000308508 CEP85LQ5SZL2 805 aa15.72■□□□□ 0.11
CSPG4-201ENST00000308508 GBP7Q8N8V2 638 aaPredicted RBP15.72■□□□□ 0.11
CSPG4-201ENST00000308508 KAT14Q9H8E8 782 aa15.72■□□□□ 0.11
CSPG4-201ENST00000308508 ZNF526Q8TF50 670 aaPredicted RBP15.72■□□□□ 0.11
CSPG4-201ENST00000308508 PHACTR2O75167 634 aa15.72■□□□□ 0.11
CSPG4-201ENST00000308508 ZNF853P0CG23 659 aa15.72■□□□□ 0.11
CSPG4-201ENST00000308508 LARP6Q9BRS8 491 aaKnown RBP15.72■□□□□ 0.11
CSPG4-201ENST00000308508 USH1CQ9Y6N9 552 aa15.72■□□□□ 0.11
CSPG4-201ENST00000308508 FMNL3Q8IVF7 1028 aa15.71■□□□□ 0.11
CSPG4-201ENST00000308508 ECHDC1Q9NTX5 307 aa15.71■□□□□ 0.11
CSPG4-201ENST00000308508 TTC22Q5TAA0 569 aa15.71■□□□□ 0.11
CSPG4-201ENST00000308508 MMRN2Q9H8L6 949 aa15.71■□□□□ 0.11
CSPG4-201ENST00000308508 RTL1A6NKG5 1358 aa15.71■□□□□ 0.11
CSPG4-201ENST00000308508 BICDL2A1A5D9 508 aa15.71■□□□□ 0.11
CSPG4-201ENST00000308508 RHOXF2BP0C7M4 288 aa15.71■□□□□ 0.11
CSPG4-201ENST00000308508 DDX55Q8NHQ9 600 aaKnown RBP eCLIP15.71■□□□□ 0.11
CSPG4-201ENST00000308508 TMX3Q96JJ7 454 aa15.71■□□□□ 0.11
CSPG4-201ENST00000308508 RHOXF2Q9BQY4 288 aa15.71■□□□□ 0.11
CSPG4-201ENST00000308508 ANKIB1Q9P2G1 1089 aa15.71■□□□□ 0.11
CSPG4-201ENST00000308508 SAMM50Q9Y512 469 aa15.71■□□□□ 0.11
CSPG4-201ENST00000308508 AFMP43652 599 aa15.71■□□□□ 0.11
CSPG4-201ENST00000308508 FYB2Q5VWT5 728 aa15.71■□□□□ 0.11
CSPG4-201ENST00000308508 UBLCP1Q8WVY7 318 aaPredicted RBP15.71■□□□□ 0.1
CSPG4-201ENST00000308508 SMARCA4P51532 1647 aa15.71■□□□□ 0.1
CSPG4-201ENST00000308508 CCDC8Q9H0W5 538 aaPredicted RBP15.71■□□□□ 0.1
CSPG4-201ENST00000308508 PPP1R7Q15435 360 aa15.7■□□□□ 0.1
CSPG4-201ENST00000308508 VCXQ9H320 206 aa15.7■□□□□ 0.1
CSPG4-201ENST00000308508 INPP5BP32019 993 aa15.7■□□□□ 0.1
CSPG4-201ENST00000308508 ARHGAP25P42331 645 aa15.7■□□□□ 0.1
CSPG4-201ENST00000308508 TYRO3Q06418 890 aa15.7■□□□□ 0.1
CSPG4-201ENST00000308508 RRS1Q15050 365 aaKnown RBP15.7■□□□□ 0.1
CSPG4-201ENST00000308508 GUCA1BQ9UMX6 200 aa15.7■□□□□ 0.1
CSPG4-201ENST00000308508 TUBB2AQ13885 445 aa15.7■□□□□ 0.1
CSPG4-201ENST00000308508 ZNF569Q5MCW4 686 aa15.7■□□□□ 0.1
CSPG4-201ENST00000308508 TUBB2BQ9BVA1 445 aa15.7■□□□□ 0.1
CSPG4-201ENST00000308508 C20orf194Q5TEA3 1177 aa15.7■□□□□ 0.1
CSPG4-201ENST00000308508 SMIM23A6NLE4 172 aa15.7■□□□□ 0.1
CSPG4-201ENST00000308508 CCDC26Q8TAB7 109 aa15.7■□□□□ 0.1
CSPG4-201ENST00000308508 GTF3C6Q969F1 213 aa15.7■□□□□ 0.1
CSPG4-201ENST00000308508 DNAJC25Q9H1X3 360 aa15.7■□□□□ 0.1
CSPG4-201ENST00000308508 RBM28Q9NW13 759 aaKnown RBP15.7■□□□□ 0.1
CSPG4-201ENST00000308508 UTP14AQ9BVJ6 771 aaKnown RBP15.69■□□□□ 0.1
CSPG4-201ENST00000308508 MTUS1Q9ULD2 1270 aa15.69■□□□□ 0.1
CSPG4-201ENST00000308508 GAPVD1Q14C86 1478 aa15.69■□□□□ 0.1
CSPG4-201ENST00000308508 C11orf95C9JLR9 678 aaPredicted RBP15.69■□□□□ 0.1
CSPG4-201ENST00000308508 GIGYF1O75420 1035 aaPredicted RBP15.69■□□□□ 0.1
CSPG4-201ENST00000308508 CALCOCO2Q13137 446 aa15.69■□□□□ 0.1
CSPG4-201ENST00000308508 SNX16P57768 344 aa15.69■□□□□ 0.1
CSPG4-201ENST00000308508 PPP1R1BQ9UD71 204 aaPredicted RBP15.69■□□□□ 0.1
CSPG4-201ENST00000308508 GPR161Q8N6U8 529 aaKnown RBP15.69■□□□□ 0.1
CSPG4-201ENST00000308508 ERO1AQ96HE7 468 aa15.69■□□□□ 0.1
CSPG4-201ENST00000308508 NEK11Q8NG66 645 aa15.69■□□□□ 0.1
CSPG4-201ENST00000308508 MYD88Q99836 296 aa15.69■□□□□ 0.1
CSPG4-201ENST00000308508 VIMP08670 466 aaKnown RBP15.69■□□□□ 0.1
CSPG4-201ENST00000308508 CHMP4BP1P59074 171 aa15.69■□□□□ 0.1
CSPG4-201ENST00000308508 SEPT14Q6ZU15 432 aa15.69■□□□□ 0.1
CSPG4-201ENST00000308508 DAPK1P53355 1430 aa15.68■□□□□ 0.1
CSPG4-201ENST00000308508 RFC1P35251 1148 aaPredicted RBP15.68■□□□□ 0.1
CSPG4-201ENST00000308508 TAF7Q15545 349 aaPredicted RBP15.68■□□□□ 0.1
CSPG4-201ENST00000308508 LZTFL1Q9NQ48 299 aa15.68■□□□□ 0.1
CSPG4-201ENST00000308508 EEF2P13639 858 aaKnown RBP15.68■□□□□ 0.1
CSPG4-201ENST00000308508 UBXN1Q04323 297 aa15.68■□□□□ 0.1
CSPG4-201ENST00000308508 PHLDB2Q86SQ0 1253 aa15.68■□□□□ 0.1
CSPG4-201ENST00000308508 CNGA4Q8IV77 575 aa15.68■□□□□ 0.1
CSPG4-201ENST00000308508 CCDC25Q86WR0 208 aa15.68■□□□□ 0.1
CSPG4-201ENST00000308508 TMEM87AQ8NBN3 555 aa15.68■□□□□ 0.1
CSPG4-201ENST00000308508 NUF2Q9BZD4 464 aa15.68■□□□□ 0.1
CSPG4-201ENST00000308508 MRVI1Q9Y6F6 885 aa15.68■□□□□ 0.1
CSPG4-201ENST00000308508 C9orf84Q5VXU9 1444 aa15.68■□□□□ 0.1
CSPG4-201ENST00000308508 NDUFAB1O14561 156 aa15.68■□□□□ 0.1
CSPG4-201ENST00000308508 EPSTI1Q96J88 318 aa15.68■□□□□ 0.1
CSPG4-201ENST00000308508 DACT1Q9NYF0 836 aa15.68■□□□□ 0.1
CSPG4-201ENST00000308508 PPP2R3AQ06190 1150 aa15.68■□□□□ 0.1
CSPG4-201ENST00000308508 TMTC2Q8N394 836 aa15.68■□□□□ 0.1
CSPG4-201ENST00000308508 RGS22Q8NE09 1264 aa15.68■□□□□ 0.1
CSPG4-201ENST00000308508 ATP6V0A2Q9Y487 856 aa15.68■□□□□ 0.1
CSPG4-201ENST00000308508 SH3BGRP55822 239 aaPredicted RBP15.68■□□□□ 0.1
CSPG4-201ENST00000308508 PLCB3Q01970 1234 aa15.68■□□□□ 0.1
CSPG4-201ENST00000308508 SH2D4BQ5SQS7 431 aa15.68■□□□□ 0.1
CSPG4-201ENST00000308508 SYT10Q6XYQ8 523 aa15.68■□□□□ 0.1
CSPG4-201ENST00000308508 GABPB1Q06547 395 aaPredicted RBP15.67■□□□□ 0.1
CSPG4-201ENST00000308508 RNF168Q8IYW5 571 aaPredicted RBP15.67■□□□□ 0.1
CSPG4-201ENST00000308508 PPP1R12CQ9BZL4 782 aa15.67■□□□□ 0.1
CSPG4-201ENST00000308508 TSPY2A6NKD2 308 aa15.67■□□□□ 0.1
CSPG4-201ENST00000308508 PRIM1P49642 420 aaKnown RBP15.67■□□□□ 0.1
CSPG4-201ENST00000308508 RABGAP1Q9Y3P9 1069 aa15.67■□□□□ 0.1
CSPG4-201ENST00000308508 TLDC2A0PJX2 215 aa15.67■□□□□ 0.1
CSPG4-201ENST00000308508 ARID4AP29374 1257 aaPredicted RBP15.67■□□□□ 0.1
CSPG4-201ENST00000308508 HSP90AA4PQ58FG1 418 aa15.67■□□□□ 0.1
CSPG4-201ENST00000308508 ARHGAP24Q8N264 748 aa15.67■□□□□ 0.1
CSPG4-201ENST00000308508 IMPG2Q9BZV3 1241 aa15.67■□□□□ 0.1
CSPG4-201ENST00000308508 TXNDC2Q86VQ3 553 aa15.67■□□□□ 0.1
CSPG4-201ENST00000308508 VPS52Q8N1B4 723 aa15.67■□□□□ 0.1
CSPG4-201ENST00000308508 KRT23Q9C075 422 aa15.67■□□□□ 0.1
CSPG4-201ENST00000308508 TRIM27P14373 513 aa15.67■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms