RNA–Protein interactions for RNA: ENST00000303406.4

HOXC4-201, Transcript of homeobox C4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HOXC4, Length 1,524 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC4-201ENST00000303406 CCDC158Q5M9N0 1113 aa23.31■■□□□ 1.32
HOXC4-201ENST00000303406 LIMCH1Q9UPQ0 1083 aa23.31■■□□□ 1.32
HOXC4-201ENST00000303406 CYP46A1Q9Y6A2 500 aa23.31■■□□□ 1.32
HOXC4-201ENST00000303406 BAG4O95429 457 aaKnown RBP23.3■■□□□ 1.32
HOXC4-201ENST00000303406 CASTP20810 708 aaKnown RBP23.3■■□□□ 1.32
HOXC4-201ENST00000303406 ZSCAN31Q96LW9 406 aaPredicted RBP23.3■■□□□ 1.32
HOXC4-201ENST00000303406 GREM2Q9H772 168 aa23.3■■□□□ 1.32
HOXC4-201ENST00000303406 RTL9Q8NET4 1388 aa23.3■■□□□ 1.32
HOXC4-201ENST00000303406 AK2P54819 239 aa23.29■■□□□ 1.32
HOXC4-201ENST00000303406 KRT32Q14532 448 aa23.29■■□□□ 1.32
HOXC4-201ENST00000303406 RUFY3Q7L099 469 aa23.29■■□□□ 1.32
HOXC4-201ENST00000303406 ZNF589Q86UQ0 364 aaPredicted RBP23.29■■□□□ 1.32
HOXC4-201ENST00000303406 ZNF512BQ96KM6 892 aaPredicted RBP23.29■■□□□ 1.32
HOXC4-201ENST00000303406 JAKMIP1Q96N16 626 aaKnown RBP23.29■■□□□ 1.32
HOXC4-201ENST00000303406 U3KPZ7 1027 aaPredicted RBP23.29■■□□□ 1.32
HOXC4-201ENST00000303406 NHSQ6T4R5 1651 aa23.29■■□□□ 1.32
HOXC4-201ENST00000303406 DDX46Q7L014 1031 aaKnown RBP23.28■■□□□ 1.32
HOXC4-201ENST00000303406 XAGE2Q96GT9 111 aa23.28■■□□□ 1.32
HOXC4-201ENST00000303406 UTP14AQ9BVJ6 771 aaKnown RBP23.28■■□□□ 1.32
HOXC4-201ENST00000303406 PDRG1Q9NUG6 133 aa23.28■■□□□ 1.32
HOXC4-201ENST00000303406 ZNF652Q9Y2D9 606 aa23.28■■□□□ 1.32
HOXC4-201ENST00000303406 CNTNAP4Q9C0A0 1308 aa23.28■■□□□ 1.32
HOXC4-201ENST00000303406 ZMYM1Q5SVZ6 1142 aa23.28■■□□□ 1.32
HOXC4-201ENST00000303406 CLEC4GQ6UXB4 293 aa23.28■■□□□ 1.32
HOXC4-201ENST00000303406 LDHAL6AQ6ZMR3 332 aa23.28■■□□□ 1.32
HOXC4-201ENST00000303406 SYNE4Q8N205 404 aa23.28■■□□□ 1.32
HOXC4-201ENST00000303406 SH2B1Q9NRF2 756 aaPredicted RBP23.28■■□□□ 1.32
HOXC4-201ENST00000303406 ARAP2Q8WZ64 1704 aa23.27■■□□□ 1.32
HOXC4-201ENST00000303406 A0A0G2JS52 829 aa23.27■■□□□ 1.32
HOXC4-201ENST00000303406 GOLIM4O00461 696 aa23.27■■□□□ 1.32
HOXC4-201ENST00000303406 ATP2B3Q16720 1220 aa23.27■■□□□ 1.32
HOXC4-201ENST00000303406 METTL24Q5JXM2 366 aa23.27■■□□□ 1.32
HOXC4-201ENST00000303406 TTC39AQ5SRH9 613 aa23.27■■□□□ 1.32
HOXC4-201ENST00000303406 SUSD4Q5VX71 490 aa23.27■■□□□ 1.32
HOXC4-201ENST00000303406 VGLL2Q8N8G2 317 aa23.27■■□□□ 1.32
HOXC4-201ENST00000303406 DDX60Q8IY21 1712 aaKnown RBP23.27■■□□□ 1.32
HOXC4-201ENST00000303406 KCNQ2O43526 872 aa23.26■■□□□ 1.31
HOXC4-201ENST00000303406 BRD1O95696 1058 aa23.26■■□□□ 1.31
HOXC4-201ENST00000303406 ZFYP08048 801 aaPredicted RBP23.26■■□□□ 1.31
HOXC4-201ENST00000303406 ADCK5Q3MIX3 580 aa23.26■■□□□ 1.31
HOXC4-201ENST00000303406 ZDHHC9Q9Y397 364 aa23.26■■□□□ 1.31
HOXC4-201ENST00000303406 RNF113AO15541 343 aaKnown RBP23.25■■□□□ 1.31
HOXC4-201ENST00000303406 ANKRD1Q15327 319 aa23.25■■□□□ 1.31
HOXC4-201ENST00000303406 GORABQ5T7V8 394 aa23.25■■□□□ 1.31
HOXC4-201ENST00000303406 DSCC1Q9BVC3 393 aa23.25■■□□□ 1.31
HOXC4-201ENST00000303406 CNNM1Q9NRU3 951 aa23.25■■□□□ 1.31
HOXC4-201ENST00000303406 USP21Q9UK80 565 aa23.25■■□□□ 1.31
HOXC4-201ENST00000303406 ZSCAN21Q9Y5A6 473 aaPredicted RBP23.25■■□□□ 1.31
HOXC4-201ENST00000303406 MROH5Q6ZUA9 1318 aa23.25■■□□□ 1.31
HOXC4-201ENST00000303406 CCDC85AQ96PX6 553 aaPredicted RBP23.24■■□□□ 1.31
HOXC4-201ENST00000303406 NDUFB9Q9Y6M9 179 aa23.24■■□□□ 1.31
HOXC4-201ENST00000303406 SCN7AQ01118 1682 aa23.24■■□□□ 1.31
HOXC4-201ENST00000303406 NTSR2O95665 410 aa23.23■■□□□ 1.31
HOXC4-201ENST00000303406 RC3H1Q5TC82 1133 aaKnown RBP23.23■■□□□ 1.31
HOXC4-201ENST00000303406 PDE8BO95263 885 aa23.23■■□□□ 1.31
HOXC4-201ENST00000303406 ADORA1P30542 326 aa23.23■■□□□ 1.31
HOXC4-201ENST00000303406 BLOC1S2Q6QNY1 142 aa23.23■■□□□ 1.31
HOXC4-201ENST00000303406 BTAF1O14981 1849 aa23.22■■□□□ 1.31
HOXC4-201ENST00000303406 RPS6KB1P23443 525 aa23.22■■□□□ 1.31
HOXC4-201ENST00000303406 PKP1Q13835 747 aa23.22■■□□□ 1.31
HOXC4-201ENST00000303406 NOL8Q76FK4 1167 aaKnown RBP23.22■■□□□ 1.31
HOXC4-201ENST00000303406 LINC00116Q8NCU8 138 aa23.22■■□□□ 1.31
HOXC4-201ENST00000303406 NIP7Q9Y221 180 aaKnown RBP eCLIP23.21■■□□□ 1.31
HOXC4-201ENST00000303406 PDIA4P13667 645 aaKnown RBP23.2■■□□□ 1.3
HOXC4-201ENST00000303406 CCDC152Q4G0S7 254 aa23.2■■□□□ 1.3
HOXC4-201ENST00000303406 ISY1Q9ULR0 285 aaKnown RBP23.2■■□□□ 1.3
HOXC4-201ENST00000303406 WDR33Q9C0J8 1336 aaKnown RBP23.19■■□□□ 1.3
HOXC4-201ENST00000303406 FGFR2P21802 821 aa23.19■■□□□ 1.3
HOXC4-201ENST00000303406 PUM3Q15397 648 aaKnown RBP23.19■■□□□ 1.3
HOXC4-201ENST00000303406 SEC62Q99442 399 aaKnown RBP23.19■■□□□ 1.3
HOXC4-201ENST00000303406 MYH7P12883 1935 aa23.19■■□□□ 1.3
HOXC4-201ENST00000303406 AKAP11Q9UKA4 1901 aa23.19■■□□□ 1.3
HOXC4-201ENST00000303406 UQCRFS1P1P0C7P4 283 aa23.18■■□□□ 1.3
HOXC4-201ENST00000303406 LPIN2Q92539 896 aa23.18■■□□□ 1.3
HOXC4-201ENST00000303406 MAST3O60307 1309 aa23.18■■□□□ 1.3
HOXC4-201ENST00000303406 CPA1P15085 419 aa23.18■■□□□ 1.3
HOXC4-201ENST00000303406 ADRA2BP18089 450 aa23.18■■□□□ 1.3
HOXC4-201ENST00000303406 ARID4AP29374 1257 aaPredicted RBP23.18■■□□□ 1.3
HOXC4-201ENST00000303406 TTF1Q15361 905 aaPredicted RBP23.18■■□□□ 1.3
HOXC4-201ENST00000303406 KLHL40Q2TBA0 621 aa23.18■■□□□ 1.3
HOXC4-201ENST00000303406 L1TD1Q5T7N2 865 aaKnown RBP23.18■■□□□ 1.3
HOXC4-201ENST00000303406 ZSCAN25Q6NSZ9 544 aa23.18■■□□□ 1.3
HOXC4-201ENST00000303406 CCDC129Q6ZRS4 1044 aa23.18■■□□□ 1.3
HOXC4-201ENST00000303406 LY75O60449 1722 aa23.17■■□□□ 1.3
HOXC4-201ENST00000303406 HMGB1P09429 215 aaKnown RBP23.17■■□□□ 1.3
HOXC4-201ENST00000303406 CERKQ8TCT0 537 aa23.17■■□□□ 1.3
HOXC4-201ENST00000303406 NEK1Q96PY6 1258 aa23.17■■□□□ 1.3
HOXC4-201ENST00000303406 ATRNO75882 1429 aa23.16■■□□□ 1.3
HOXC4-201ENST00000303406 HCLS1P14317 486 aaPredicted RBP23.16■■□□□ 1.3
HOXC4-201ENST00000303406 FKBP4Q02790 459 aaKnown RBP eCLIP23.16■■□□□ 1.3
HOXC4-201ENST00000303406 APPBP2Q92624 585 aa23.16■■□□□ 1.3
HOXC4-201ENST00000303406 SMC3Q9UQE7 1217 aa23.16■■□□□ 1.3
HOXC4-201ENST00000303406 ONECUT3O60422 494 aaPredicted RBP23.15■■□□□ 1.3
HOXC4-201ENST00000303406 RPS6KA4O75676 772 aa23.15■■□□□ 1.3
HOXC4-201ENST00000303406 CYP21A2P08686 494 aa23.15■■□□□ 1.3
HOXC4-201ENST00000303406 ZAP70P43403 619 aa23.15■■□□□ 1.3
HOXC4-201ENST00000303406 MCTP1Q6DN14 999 aa23.15■■□□□ 1.3
HOXC4-201ENST00000303406 DDX24Q9GZR7 859 aaKnown RBP eCLIP23.15■■□□□ 1.3
HOXC4-201ENST00000303406 LMBRD1Q9NUN5 540 aa23.15■■□□□ 1.3
HOXC4-201ENST00000303406 COL24A1Q17RW2 1714 aa23.15■■□□□ 1.3
Retrieved 100 of 20,778 RNA–protein pairs in 46.6 ms