RNA–Protein interactions for RNA: ENST00000297261.6

SHH-201, Transcript of sonic hedgehog, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHH, Length 4,454 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-201ENST00000297261 PIBF1Q8WXW3 757 aa17.86■□□□□ 0.45
SHH-201ENST00000297261 PNMA6EA0A0J9YXQ4 647 aa17.86■□□□□ 0.45
SHH-201ENST00000297261 ZSCAN12O43309 604 aa17.86■□□□□ 0.45
SHH-201ENST00000297261 RRP12Q5JTH9 1297 aaKnown RBP17.86■□□□□ 0.45
SHH-201ENST00000297261 LUZP1Q86V48 1076 aa17.86■□□□□ 0.45
SHH-201ENST00000297261 VPS37DQ86XT2 251 aa17.86■□□□□ 0.45
SHH-201ENST00000297261 PLCD3Q8N3E9 789 aa17.86■□□□□ 0.45
SHH-201ENST00000297261 ECHDC1Q9NTX5 307 aa17.86■□□□□ 0.45
SHH-201ENST00000297261 GIGYF1O75420 1035 aaPredicted RBP17.86■□□□□ 0.45
SHH-201ENST00000297261 KIF20AO95235 890 aa17.86■□□□□ 0.45
SHH-201ENST00000297261 TTC39AQ5SRH9 613 aa17.86■□□□□ 0.45
SHH-201ENST00000297261 AXIN2Q9Y2T1 843 aa17.86■□□□□ 0.45
SHH-201ENST00000297261 SETD1BQ9UPS6 1966 aaKnown RBP17.85■□□□□ 0.45
SHH-201ENST00000297261 KIAA0754O94854 1291 aa17.85■□□□□ 0.45
SHH-201ENST00000297261 NBPF7P0C2Y1 421 aaPredicted RBP17.85■□□□□ 0.45
SHH-201ENST00000297261 GSDMDP57764 484 aa17.85■□□□□ 0.45
SHH-201ENST00000297261 TYRO3Q06418 890 aa17.85■□□□□ 0.45
SHH-201ENST00000297261 PKP1Q13835 747 aa17.85■□□□□ 0.45
SHH-201ENST00000297261 KIF4BQ2VIQ3 1234 aa17.85■□□□□ 0.45
SHH-201ENST00000297261 JAKMIP3Q5VZ66 844 aa17.85■□□□□ 0.45
SHH-201ENST00000297261 TEX13AQ9BXU3 409 aaPredicted RBP17.85■□□□□ 0.45
SHH-201ENST00000297261 FKBP4Q02790 459 aaKnown RBP eCLIP17.84■□□□□ 0.45
SHH-201ENST00000297261 FEZ1Q99689 392 aa17.84■□□□□ 0.45
SHH-201ENST00000297261 TRIM34Q9BYJ4 488 aa17.84■□□□□ 0.45
SHH-201ENST00000297261 FER1L4A9Z1Z3 1794 aa17.84■□□□□ 0.45
SHH-201ENST00000297261 CTAGE5O15320 804 aa17.84■□□□□ 0.45
SHH-201ENST00000297261 CCT2P78371 535 aaKnown RBP17.84■□□□□ 0.45
SHH-201ENST00000297261 DNAI1Q9UI46 699 aa17.84■□□□□ 0.45
SHH-201ENST00000297261 TOM1O60784 492 aa17.84■□□□□ 0.45
SHH-201ENST00000297261 STX1AQ16623 288 aa17.84■□□□□ 0.45
SHH-201ENST00000297261 OGFRQ9NZT2 677 aa17.84■□□□□ 0.45
SHH-201ENST00000297261 UBAP1LF5GYI3 381 aa17.83■□□□□ 0.45
SHH-201ENST00000297261 ANAPC15P60006 121 aa17.83■□□□□ 0.45
SHH-201ENST00000297261 EPB41L2O43491 1005 aaKnown RBP17.83■□□□□ 0.44
SHH-201ENST00000297261 IBSPP21815 317 aaPredicted RBP17.83■□□□□ 0.44
SHH-201ENST00000297261 ACSBG1Q96GR2 724 aa17.83■□□□□ 0.44
SHH-201ENST00000297261 CCDC171Q6TFL3 1326 aa17.83■□□□□ 0.44
SHH-201ENST00000297261 ZNF500O60304 480 aaPredicted RBP17.83■□□□□ 0.44
SHH-201ENST00000297261 SLU7O95391 586 aaKnown RBP17.83■□□□□ 0.44
SHH-201ENST00000297261 CASQ1P31415 396 aa17.83■□□□□ 0.44
SHH-201ENST00000297261 CCAR1Q8IX12 1150 aaKnown RBP17.82■□□□□ 0.44
SHH-201ENST00000297261 GNG11P61952 73 aa17.82■□□□□ 0.44
SHH-201ENST00000297261 VPS53Q5VIR6 699 aa17.82■□□□□ 0.44
SHH-201ENST00000297261 BRINP3Q76B58 766 aa17.82■□□□□ 0.44
SHH-201ENST00000297261 CPLX3Q8WVH0 158 aa17.82■□□□□ 0.44
SHH-201ENST00000297261 GADD45BO75293 160 aaPredicted RBP17.82■□□□□ 0.44
SHH-201ENST00000297261 CDR1P51861 262 aa17.82■□□□□ 0.44
SHH-201ENST00000297261 USP44Q9H0E7 712 aa17.82■□□□□ 0.44
SHH-201ENST00000297261 CENPHQ9H3R5 247 aa17.82■□□□□ 0.44
SHH-201ENST00000297261 TRMT112Q9UI30 125 aaKnown RBP17.82■□□□□ 0.44
SHH-201ENST00000297261 SYT1P21579 422 aa17.82■□□□□ 0.44
SHH-201ENST00000297261 KLHL10Q6JEL2 608 aa17.82■□□□□ 0.44
SHH-201ENST00000297261 MPHOSPH8Q99549 860 aa17.82■□□□□ 0.44
SHH-201ENST00000297261 CRACR2AQ9BSW2 395 aa17.81■□□□□ 0.44
SHH-201ENST00000297261 LMBR1LQ6UX01 489 aa17.81■□□□□ 0.44
SHH-201ENST00000297261 BICDL1Q6ZP65 573 aa17.81■□□□□ 0.44
SHH-201ENST00000297261 BCL2L12Q9HB09 334 aa17.81■□□□□ 0.44
SHH-201ENST00000297261 ERBB4Q15303 1308 aa17.81■□□□□ 0.44
SHH-201ENST00000297261 SLC3A2P08195 630 aaKnown RBP17.81■□□□□ 0.44
SHH-201ENST00000297261 VGLL3A8MV65 326 aa17.8■□□□□ 0.44
SHH-201ENST00000297261 DDB1Q16531 1140 aa17.8■□□□□ 0.44
SHH-201ENST00000297261 ZNF397Q8NF99 534 aaPredicted RBP17.8■□□□□ 0.44
SHH-201ENST00000297261 BICC1Q9H694 974 aaKnown RBP17.8■□□□□ 0.44
SHH-201ENST00000297261 DACH1Q9UI36 760 aa17.8■□□□□ 0.44
SHH-201ENST00000297261 XBP1P17861 261 aa17.8■□□□□ 0.44
SHH-201ENST00000297261 INTS4Q96HW7 963 aaKnown RBP17.8■□□□□ 0.44
SHH-201ENST00000297261 CPA1P15085 419 aa17.8■□□□□ 0.44
SHH-201ENST00000297261 AK2P54819 239 aa17.8■□□□□ 0.44
SHH-201ENST00000297261 IFIT5Q13325 482 aaKnown RBP17.8■□□□□ 0.44
SHH-201ENST00000297261 METTL24Q5JXM2 366 aa17.8■□□□□ 0.44
SHH-201ENST00000297261 GTF3C6Q969F1 213 aa17.8■□□□□ 0.44
SHH-201ENST00000297261 MTMR7Q9Y216 660 aa17.8■□□□□ 0.44
SHH-201ENST00000297261 USP32Q8NFA0 1604 aa17.8■□□□□ 0.44
SHH-201ENST00000297261 CAVIN2O95810 425 aa17.8■□□□□ 0.44
SHH-201ENST00000297261 GPATCH11Q8N954 259 aa17.8■□□□□ 0.44
SHH-201ENST00000297261 ZNHIT6Q9NWK9 470 aaKnown RBP17.8■□□□□ 0.44
SHH-201ENST00000297261 USP16Q9Y5T5 823 aa17.8■□□□□ 0.44
SHH-201ENST00000297261 PRAMEF22A3QJZ6 481 aa17.79■□□□□ 0.44
SHH-201ENST00000297261 MCM6Q14566 821 aa17.79■□□□□ 0.44
SHH-201ENST00000297261 TMX4Q9H1E5 349 aaPredicted RBP17.79■□□□□ 0.44
SHH-201ENST00000297261 PROSER3Q2NL68 480 aa17.79■□□□□ 0.44
SHH-201ENST00000297261 IPO4Q8TEX9 1081 aaKnown RBP17.79■□□□□ 0.44
SHH-201ENST00000297261 C8orf76Q96K31 380 aa17.79■□□□□ 0.44
SHH-201ENST00000297261 A1BGP04217 495 aa17.78■□□□□ 0.44
SHH-201ENST00000297261 USP8P40818 1118 aa17.78■□□□□ 0.44
SHH-201ENST00000297261 TBC1D2BQ9UPU7 963 aa17.78■□□□□ 0.44
SHH-201ENST00000297261 COL3A1P02461 1466 aaPredicted RBP17.78■□□□□ 0.44
SHH-201ENST00000297261 SPATA31A3Q5VYP0 1347 aa17.78■□□□□ 0.44
SHH-201ENST00000297261 CCDC69A6NI79 296 aa17.78■□□□□ 0.44
SHH-201ENST00000297261 KIF5CO60282 957 aa17.78■□□□□ 0.44
SHH-201ENST00000297261 CD2BP2O95400 341 aaKnown RBP17.78■□□□□ 0.44
SHH-201ENST00000297261 HSP90AA4PQ58FG1 418 aa17.78■□□□□ 0.44
SHH-201ENST00000297261 FAM173BQ6P4H8 233 aa17.78■□□□□ 0.44
SHH-201ENST00000297261 C1orf167Q5SNV9 1468 aa17.78■□□□□ 0.44
SHH-201ENST00000297261 POLR3DP05423 398 aaPredicted RBP17.78■□□□□ 0.44
SHH-201ENST00000297261 GBP3Q9H0R5 595 aa17.78■□□□□ 0.44
SHH-201ENST00000297261 SART3Q15020 963 aaKnown RBP17.78■□□□□ 0.44
SHH-201ENST00000297261 SIRT2Q8IXJ6 389 aa17.78■□□□□ 0.44
SHH-201ENST00000297261 EVI5LQ96CN4 794 aa17.78■□□□□ 0.44
SHH-201ENST00000297261 BRMS1Q9HCU9 246 aa17.78■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 55.6 ms