RNA–Protein interactions for RNA: ENSMUST00000054384.5

Trim56-201, Transcript of E3 ubiquitin-protein ligase TRIM56, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Trim56, Length 9,279 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Trim56-201ENSMUST00000054384 Fmnl3Q6ZPF4 1028 aa13.49□□□□□ -0.25
Trim56-201ENSMUST00000054384 Ccdc155Q80VJ8 648 aa13.49□□□□□ -0.25
Trim56-201ENSMUST00000054384 Tbc1d5Q80XQ2 815 aa13.49□□□□□ -0.25
Trim56-201ENSMUST00000054384 Dmrt2Q8BG36 561 aa13.49□□□□□ -0.25
Trim56-201ENSMUST00000054384 Tbc1d8Q9Z1A9 1134 aa13.49□□□□□ -0.25
Trim56-201ENSMUST00000054384 Sec63Q8VHE0 760 aaKnown RBP13.49□□□□□ -0.25
Trim56-201ENSMUST00000054384 Krt20Q9D312 431 aa13.49□□□□□ -0.25
Trim56-201ENSMUST00000054384 Tacc2Q9JJG0 1149 aa13.49□□□□□ -0.25
Trim56-201ENSMUST00000054384 Rapgef6Q5NCJ1 1609 aa13.48□□□□□ -0.25
Trim56-201ENSMUST00000054384 Znf697Q569E7 569 aa13.48□□□□□ -0.25
Trim56-201ENSMUST00000054384 Ranbp6Q8BIV3 1105 aa13.48□□□□□ -0.25
Trim56-201ENSMUST00000054384 Tshz3Q8CGV9 1081 aa13.48□□□□□ -0.25
Trim56-201ENSMUST00000054384 Samd15F6XZJ7 620 aa13.48□□□□□ -0.25
Trim56-201ENSMUST00000054384 SkiQ60698 725 aa13.48□□□□□ -0.25
Trim56-201ENSMUST00000054384 Snx13Q6PHS6 957 aa13.48□□□□□ -0.25
Trim56-201ENSMUST00000054384 Cep128Q8BI22 1102 aa13.48□□□□□ -0.25
Trim56-201ENSMUST00000054384 Naa25Q8BWZ3 972 aa13.48□□□□□ -0.25
Trim56-201ENSMUST00000054384 Tmx1Q8VBT0 278 aa13.48□□□□□ -0.25
Trim56-201ENSMUST00000054384 Nsfl1cQ9CZ44 370 aaKnown RBP13.48□□□□□ -0.25
Trim56-201ENSMUST00000054384 RpgrQ9R0X5 1001 aa13.48□□□□□ -0.25
Trim56-201ENSMUST00000054384 Dennd3A2RT67 1274 aa13.48□□□□□ -0.25
Trim56-201ENSMUST00000054384 Ppfia3P60469 1194 aa13.48□□□□□ -0.25
Trim56-201ENSMUST00000054384 Arhgap24Q8C4V1 747 aa13.48□□□□□ -0.25
Trim56-201ENSMUST00000054384 Spocd1B1ASB6 936 aa13.48□□□□□ -0.25
Trim56-201ENSMUST00000054384 Hmgb1P63158 215 aaKnown RBP13.48□□□□□ -0.25
Trim56-201ENSMUST00000054384 Ddx27Q921N6 760 aaKnown RBP13.48□□□□□ -0.25
Trim56-201ENSMUST00000054384 Chd1lQ9CXF7 900 aa13.48□□□□□ -0.25
Trim56-201ENSMUST00000054384 Q3UJC8 639 aa13.48□□□□□ -0.25
Trim56-201ENSMUST00000054384 Efhd1Q9D4J1 240 aa13.48□□□□□ -0.25
Trim56-201ENSMUST00000054384 S100bP50114 92 aa13.47□□□□□ -0.25
Trim56-201ENSMUST00000054384 Calm1P0DP26 149 aaKnown RBP13.47□□□□□ -0.25
Trim56-201ENSMUST00000054384 Calm2P0DP27 149 aaKnown RBP13.47□□□□□ -0.25
Trim56-201ENSMUST00000054384 Calm3P0DP28 149 aaKnown RBP13.47□□□□□ -0.25
Trim56-201ENSMUST00000054384 Tubb5P99024 444 aaKnown RBP13.47□□□□□ -0.25
Trim56-201ENSMUST00000054384 Eif2aQ8BJW6 581 aaKnown RBP13.47□□□□□ -0.25
Trim56-201ENSMUST00000054384 DymQ8CHY3 669 aa13.47□□□□□ -0.25
Trim56-201ENSMUST00000054384 Ccdc89Q9DA73 370 aa13.47□□□□□ -0.25
Trim56-201ENSMUST00000054384 L3mbtl2P59178 703 aa13.47□□□□□ -0.25
Trim56-201ENSMUST00000054384 Tyro3P55144 880 aa13.47□□□□□ -0.25
Trim56-201ENSMUST00000054384 Psmd6Q99JI4 389 aa13.47□□□□□ -0.25
Trim56-201ENSMUST00000054384 MarcksP26645 309 aaKnown RBP13.47□□□□□ -0.25
Trim56-201ENSMUST00000054384 Ano6Q6P9J9 911 aa13.47□□□□□ -0.25
Trim56-201ENSMUST00000054384 Gtpbp10Q8K013 366 aa13.47□□□□□ -0.25
Trim56-201ENSMUST00000054384 Apbb1ipQ8R5A3 670 aa13.47□□□□□ -0.25
Trim56-201ENSMUST00000054384 Depdc1bQ8BH88 529 aa13.47□□□□□ -0.25
Trim56-201ENSMUST00000054384 Fsip1Q9D3V5 435 aa13.47□□□□□ -0.25
Trim56-201ENSMUST00000054384 Krt13P08730 437 aa13.47□□□□□ -0.25
Trim56-201ENSMUST00000054384 Ankle2Q6P1H6 964 aa13.47□□□□□ -0.25
Trim56-201ENSMUST00000054384 Sycp2lA0A0M3U1B0 842 aa13.46□□□□□ -0.25
Trim56-201ENSMUST00000054384 Sdad1Q80UZ2 687 aaKnown RBP13.46□□□□□ -0.25
Trim56-201ENSMUST00000054384 RbsnQ80Y56 783 aa13.46□□□□□ -0.25
Trim56-201ENSMUST00000054384 Fam114a1Q9D281 569 aa13.46□□□□□ -0.25
Trim56-201ENSMUST00000054384 St5Q924W7 1134 aa13.46□□□□□ -0.25
Trim56-201ENSMUST00000054384 Arfgap2Q99K28 520 aa13.46□□□□□ -0.25
Trim56-201ENSMUST00000054384 Ccne1Q61457 408 aa13.46□□□□□ -0.25
Trim56-201ENSMUST00000054384 Ccdc152E9PX14 254 aa13.46□□□□□ -0.25
Trim56-201ENSMUST00000054384 Ift122Q6NWV3 1182 aa13.46□□□□□ -0.25
Trim56-201ENSMUST00000054384 GnaqP21279 359 aa13.46□□□□□ -0.26
Trim56-201ENSMUST00000054384 Eef2P58252 858 aaKnown RBP13.46□□□□□ -0.26
Trim56-201ENSMUST00000054384 Golga1Q9CW79 758 aa13.46□□□□□ -0.26
Trim56-201ENSMUST00000054384 Ankrd26Q811D2 1581 aa13.46□□□□□ -0.26
Trim56-201ENSMUST00000054384 Svs3aF2Z472 265 aa13.46□□□□□ -0.26
Trim56-201ENSMUST00000054384 Bank1Q80VH0 783 aa13.46□□□□□ -0.26
Trim56-201ENSMUST00000054384 Tsnaxip1Q99P25 704 aa13.46□□□□□ -0.26
Trim56-201ENSMUST00000054384 Cacna2d3Q9Z1L5 1091 aa13.46□□□□□ -0.26
Trim56-201ENSMUST00000054384 Krt25Q8VCW2 446 aa13.46□□□□□ -0.26
Trim56-201ENSMUST00000054384 Pik3ap1Q9EQ32 811 aa13.46□□□□□ -0.26
Trim56-201ENSMUST00000054384 Ddx24Q9ESV0 857 aaKnown RBP13.45□□□□□ -0.26
Trim56-201ENSMUST00000054384 Q3UPC7 1272 aa13.45□□□□□ -0.26
Trim56-201ENSMUST00000054384 Ccdc57Q6PHN1 1016 aa13.45□□□□□ -0.26
Trim56-201ENSMUST00000054384 Ccdc14Q8K2J4 934 aa13.45□□□□□ -0.26
Trim56-201ENSMUST00000054384 Gm14025A2AP89 1413 aa13.45□□□□□ -0.26
Trim56-201ENSMUST00000054384 Mroh2bQ7M6Y6 1581 aa13.45□□□□□ -0.26
Trim56-201ENSMUST00000054384 Tex13c2A0A0G2JGA3 530 aa13.45□□□□□ -0.26
Trim56-201ENSMUST00000054384 Zfp397Q7TNK4 527 aa13.45□□□□□ -0.26
Trim56-201ENSMUST00000054384 Rbm33Q9CXK9 1231 aaKnown RBP13.45□□□□□ -0.26
Trim56-201ENSMUST00000054384 A2mQ6GQT1 1474 aa13.45□□□□□ -0.26
Trim56-201ENSMUST00000054384 VimP20152 466 aaKnown RBP13.45□□□□□ -0.26
Trim56-201ENSMUST00000054384 Haus1Q8BHX1 278 aa13.45□□□□□ -0.26
Trim56-201ENSMUST00000054384 Grin2bQ01097 1482 aa13.45□□□□□ -0.26
Trim56-201ENSMUST00000054384 Larp6Q8BN59 492 aa13.45□□□□□ -0.26
Trim56-201ENSMUST00000054384 Pdcd6ipQ9WU78 869 aaKnown RBP13.45□□□□□ -0.26
Trim56-201ENSMUST00000054384 Ccdc121E9Q6D3 323 aa13.45□□□□□ -0.26
Trim56-201ENSMUST00000054384 Krt8P11679 490 aaKnown RBP13.45□□□□□ -0.26
Trim56-201ENSMUST00000054384 Akr1b8P45377 316 aa13.45□□□□□ -0.26
Trim56-201ENSMUST00000054384 Smarcc2Q6PDG5 1213 aa13.45□□□□□ -0.26
Trim56-201ENSMUST00000054384 Diaph2O70566 1098 aa13.45□□□□□ -0.26
Trim56-201ENSMUST00000054384 Rimbp2Q80U40 1072 aa13.45□□□□□ -0.26
Trim56-201ENSMUST00000054384 Ebag9Q9D0V7 213 aa13.45□□□□□ -0.26
Trim56-201ENSMUST00000054384 Unc13aQ4KUS2 1712 aa13.45□□□□□ -0.26
Trim56-201ENSMUST00000054384 Rbbp8nlA2ABX0 614 aa13.44□□□□□ -0.26
Trim56-201ENSMUST00000054384 Ranbp1P34022 203 aaKnown RBP13.44□□□□□ -0.26
Trim56-201ENSMUST00000054384 Cct6bQ61390 531 aa13.44□□□□□ -0.26
Trim56-201ENSMUST00000054384 Kank1E9Q238 1360 aa13.44□□□□□ -0.26
Trim56-201ENSMUST00000054384 InsrP15208 1372 aa13.44□□□□□ -0.26
Trim56-201ENSMUST00000054384 IqceQ6PCQ0 778 aa13.44□□□□□ -0.26
Trim56-201ENSMUST00000054384 Rassf4Q8CB96 322 aa13.44□□□□□ -0.26
Trim56-201ENSMUST00000054384 Exoc3Q6KAR6 755 aa13.44□□□□□ -0.26
Trim56-201ENSMUST00000054384 Sptlc2P97363 560 aaKnown RBP13.44□□□□□ -0.26
Trim56-201ENSMUST00000054384 IqcdQ9D3V1 458 aa13.44□□□□□ -0.26
Retrieved 100 of 22,080 RNA–protein pairs in 67.2 ms